GSE_ID RECNUM CONTACTPERSON SERIESTITLE SUMMARY CONTRIBUTORS EXPDESIGN PUBMEDID PAPER_ID SRA_STUDY_NUM SRR URL_SRR_SOURCE GSM SRA SRX ASSAYTYPE LIBRARYLAYOUT SRP BIOPROJECT 14025 1 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029266 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029266 GSM352202 SRA009988 SRX012330 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 2 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029267 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029267 GSM352202 SRA009988 SRX012330 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 3 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029268 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029268 GSM352202 SRA009988 SRX012330 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 4 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029269 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029269 GSM352202 SRA009988 SRX012330 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 5 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029270 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029270 GSM352202 SRA009988 SRX012330 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 6 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029271 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029271 GSM352203 SRA009988 SRX012331 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 7 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029272 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029272 GSM352203 SRA009988 SRX012331 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 8 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029273 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029273 GSM352203 SRA009988 SRX012331 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 9 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029274 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029274 GSM352203 SRA009988 SRX012331 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 10 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029275 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029275 GSM352203 SRA009988 SRX012331 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 11 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029238 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029238 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 12 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029239 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029239 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 13 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029240 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029240 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 14 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029241 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029241 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 15 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029242 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029242 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 16 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029243 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029243 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 17 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029244 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029244 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 18 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029245 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029245 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 19 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029246 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029246 GSM352204 SRA009988 SRX012313 OTHER SINGLE SRP001343 PRJNA112449 14025 20 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029276 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029276 GSM419463 SRA009988 SRX012332 ChIP-Seq SINGLE SRP001343 PRJNA112449 14025 21 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos 19758566 40368 SRP001343 SRR029277 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000028/SRR029277 GSM419463 SRA009988 SRX012332 ChIP-Seq SINGLE SRP001343 PRJNA112449 14952 1 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 SRR020456 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000019/SRR020456 GSM372598 SRA009325 SRX007332 OTHER SINGLE SRP001036 PRJNA111817 14952 2 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 SRR020457 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000019/SRR020457 GSM372601 SRA009325 SRX007333 OTHER SINGLE SRP001036 PRJNA111817 14952 3 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 SRR020458 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000019/SRR020458 GSM372602 SRA009325 SRX007334 OTHER SINGLE SRP001036 PRJNA111817 14952 4 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 SRR020459 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000019/SRR020459 GSM372603 SRA009325 SRX007335 OTHER SINGLE SRP001036 PRJNA111817 14952 5 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 SRR020460 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000019/SRR020460 GSM372604 SRA009325 SRX007336 OTHER SINGLE SRP001036 PRJNA111817 19173 1 Nicolas Robine Xenopus egg small RNA associated with Y12 antibody We examined in Xenopus tropicalis eggs piRNAs that are associated with Y12 antibody, which binds symmetrically methylated arginines that are present o Nicolas Robine, Nelson Lau, Eric Lai Sequencing of a cDNA library from small RNAs from the Y12 immunoprecipitate 20022248 40809 SRP001702 SRR033660 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/000032/SRR033660 GSM475282 SRA010774 SRX015664 RNA-Seq SINGLE SRP001702 PRJNA120587 21482 1 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 SRR040482 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000039/SRR040482 GSM537039 SRA012595 SRX019583 ChIP-Seq SINGLE SRP002372 PRJNA126041 21482 2 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 SRR040483 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000039/SRR040483 GSM537039 SRA012595 SRX019583 ChIP-Seq SINGLE SRP002372 PRJNA126041 21482 3 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 SRR085448 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000083/SRR085448 GSM632116 SRA012595 SRX035149 RNA-Seq SINGLE SRP002372 PRJNA126041 21482 4 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 SRR085449 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000083/SRR085449 GSM632116 SRA012595 SRX035149 RNA-Seq SINGLE SRP002372 PRJNA126041 21482 5 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 SRR085450 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000083/SRR085450 GSM632117 SRA012595 SRX035150 RNA-Seq SINGLE SRP002372 PRJNA126041 21482 6 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 SRR085451 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000083/SRR085451 GSM632117 SRA012595 SRX035150 RNA-Seq SINGLE SRP002372 PRJNA126041 22146 1 Kevin Lebrigand microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand 2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated) and 26 (ciliated) of Xenopus laevis development 21602795 43315 SRP002578 SRR057341 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000055/SRR057341 GSM550779 SRA020109 SRX021834 RNA-Seq SINGLE SRP002578 PRJNA129201 22146 2 Kevin Lebrigand microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand 2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated) and 26 (ciliated) of Xenopus laevis development 21602795 43315 SRP002578 SRR057342 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000055/SRR057342 GSM550780 SRA020109 SRX021835 RNA-Seq SINGLE SRP002578 PRJNA129201 22146 3 Kevin Lebrigand microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand 2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated) and 26 (ciliated) of Xenopus laevis development 21602795 43315 SRP002578 SRR057343 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000055/SRR057343 GSM550781 SRA020109 SRX021836 RNA-Seq SINGLE SRP002578 PRJNA129201 22146 4 Kevin Lebrigand microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand 2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated) and 26 (ciliated) of Xenopus laevis development 21602795 43315 SRP002578 SRR057344 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000056/SRR057344 GSM550782 SRA020109 SRX021837 RNA-Seq SINGLE SRP002578 PRJNA129201 23913 1 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA 21636662 43338 SRP003559 SRR065795 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000064/SRR065795 GSM589696 SRA023915 SRX026883 OTHER SINGLE SRP003559 PRJNA130531 23913 2 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA 21636662 43338 SRP003559 SRR065796 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000064/SRR065796 GSM589697 SRA023915 SRX026884 OTHER SINGLE SRP003559 PRJNA130531 23913 3 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA 21636662 43338 SRP003559 SRR065797 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000064/SRR065797 GSM589698 SRA023915 SRX026885 OTHER SINGLE SRP003559 PRJNA130531 23913 4 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA 21636662 43338 SRP003559 SRR065798 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000064/SRR065798 GSM589699 SRA023915 SRX026886 OTHER SINGLE SRP003559 PRJNA130531 30067 1 Juan Larrain Deep sequencing of small RNAs in the Xenopus tropicalis gastrula Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo Analysis of small RNAs expressed in the Xenopus tropicalis gastrula. 21818339 43632 SRP007217 SRR285186 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/000278/SRR285186 GSM744253 SRA038449 SRX077929 RNA-Seq SINGLE SRP007217 PRJNA144001 30067 2 Juan Larrain Deep sequencing of small RNAs in the Xenopus tropicalis gastrula Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo Analysis of small RNAs expressed in the Xenopus tropicalis gastrula. 21818339 43632 SRP007217 SRR285187 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/000278/SRR285187 GSM744254 SRA038449 SRX077930 RNA-Seq SINGLE SRP007217 PRJNA144001 30146 1 Se-Jin Yoon HEB and E2A function as SMAD/FOXH1 cofactors Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo. 21828274 43683 SRP007355 SRR299084 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/000292/SRR299084 GSM746611 SRA039282 SRX080197 ChIP-Seq SINGLE SRP007355 PRJNA143851 30146 2 Se-Jin Yoon HEB and E2A function as SMAD/FOXH1 cofactors Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo. 21828274 43683 SRP007355 SRR299085 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/000292/SRR299085 GSM746612 SRA039282 SRX080198 ChIP-Seq SINGLE SRP007355 PRJNA143851 33444 1 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360852 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360852 GSM827025 SRA047840 SRX104181 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 2 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360853 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360853 GSM827026 SRA047840 SRX104182 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 3 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360854 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360854 GSM827027 SRA047840 SRX104183 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 4 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360855 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360855 GSM827028 SRA047840 SRX104184 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 5 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360856 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360856 GSM827029 SRA047840 SRX104185 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 6 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360857 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360857 GSM827030 SRA047840 SRX104186 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 7 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360858 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360858 GSM827031 SRA047840 SRX104187 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 8 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360859 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360859 GSM827032 SRA047840 SRX104188 RNA-Seq SINGLE SRP009183 PRJNA148701 33444 9 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 SRR360860 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/000352/SRR360860 GSM827033 SRA047840 SRX104189 RNA-Seq SINGLE SRP009183 PRJNA148701 37452 1 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489439 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489439 GSM919922 SRA051954 SRX143516 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 2 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489440 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489440 GSM919923 SRA051954 SRX143517 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 3 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489441 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489441 GSM919924 SRA051954 SRX143518 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 4 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489442 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489442 GSM919925 SRA051954 SRX143519 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 5 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489443 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489443 GSM919926 SRA051954 SRX143520 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 6 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489444 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489444 GSM919927 SRA051954 SRX143521 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 7 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489445 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489445 GSM919928 SRA051954 SRX143522 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 8 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489446 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489446 GSM919929 SRA051954 SRX143523 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 9 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489447 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489447 GSM919930 SRA051954 SRX143524 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 10 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489448 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489448 GSM919931 SRA051954 SRX143525 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 11 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489449 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489449 GSM919932 SRA051954 SRX143526 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 12 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489450 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489450 GSM919933 SRA051954 SRX143527 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 13 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489451 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489451 GSM919934 SRA051954 SRX143528 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 14 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489452 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489452 GSM919935 SRA051954 SRX143529 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 15 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489453 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489453 GSM919936 SRA051954 SRX143530 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 16 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489454 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489454 GSM919937 SRA051954 SRX143531 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 17 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489455 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489455 GSM919938 SRA051954 SRX143532 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 18 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489456 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489456 GSM919939 SRA051954 SRX143533 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 19 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489457 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489457 GSM919940 SRA051954 SRX143534 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 20 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489458 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489458 GSM919941 SRA051954 SRX143535 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 21 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489459 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489459 GSM919942 SRA051954 SRX143536 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 22 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489460 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489460 GSM919943 SRA051954 SRX143537 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 23 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489461 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489461 GSM919944 SRA051954 SRX143538 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 24 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489462 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489462 GSM919945 SRA051954 SRX143539 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 25 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489463 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489463 GSM919946 SRA051954 SRX143540 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 26 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489464 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489464 GSM919947 SRA051954 SRX143541 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 27 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489465 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489465 GSM919948 SRA051954 SRX143542 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 28 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489466 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489466 GSM919949 SRA051954 SRX143543 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 29 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489467 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489467 GSM919950 SRA051954 SRX143544 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 30 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489468 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489468 GSM919951 SRA051954 SRX143545 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 31 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489469 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489469 GSM919952 SRA051954 SRX143546 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 32 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489470 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489470 GSM919953 SRA051954 SRX143547 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 33 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489471 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000477/SRR489471 GSM919954 SRA051954 SRX143548 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 34 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489472 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000478/SRR489472 GSM919955 SRA051954 SRX143549 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 35 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489473 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000478/SRR489473 GSM919956 SRA051954 SRX143550 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 36 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489474 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000478/SRR489474 GSM919957 SRA051954 SRX143551 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 37 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489475 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000478/SRR489475 GSM919958 SRA051954 SRX143552 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 38 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489476 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000478/SRR489476 GSM919959 SRA051954 SRX143553 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 39 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489477 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000478/SRR489477 GSM919960 SRA051954 SRX143554 RNA-Seq PAIRED SRP012375 PRJNA160141 37452 40 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 SRR489478 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000478/SRR489478 GSM919961 SRA051954 SRX143555 RNA-Seq PAIRED SRP012375 PRJNA160141 38605 1 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505561 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505561 GSM945997 SRA053593 SRX152563 RNA-Seq SINGLE SRP013627 PRJNA168208 38605 2 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505562 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505562 GSM945998 SRA053593 SRX152564 RNA-Seq SINGLE SRP013627 PRJNA168208 38605 3 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505563 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505563 GSM945999 SRA053593 SRX152565 RNA-Seq SINGLE SRP013627 PRJNA168208 38605 4 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505564 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505564 GSM946000 SRA053593 SRX152566 RNA-Seq SINGLE SRP013627 PRJNA168208 38605 5 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505565 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505565 GSM946001 SRA053593 SRX152567 RNA-Seq SINGLE SRP013627 PRJNA168208 38605 6 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505566 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505566 GSM946002 SRA053593 SRX152568 RNA-Seq SINGLE SRP013627 PRJNA168208 38605 7 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505567 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505567 GSM946003 SRA053593 SRX152569 RNA-Seq SINGLE SRP013627 PRJNA168208 38605 8 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 SRR505568 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/000493/SRR505568 GSM946004 SRA053593 SRX152570 RNA-Seq SINGLE SRP013627 PRJNA168208 41161 1 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576762 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576762 GSM1009589 SRA059058 SRX189700 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 2 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576763 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576763 GSM1009590 SRA059058 SRX189701 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 3 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576764 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576764 GSM1009591 SRA059058 SRX189702 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 4 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576765 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576765 GSM1009592 SRA059058 SRX189703 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 5 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576766 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576766 GSM1009593 SRA059058 SRX189704 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 6 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576767 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576767 GSM1009594 SRA059058 SRX189705 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 7 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576768 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576768 GSM1009595 SRA059058 SRX189706 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 8 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576769 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576769 GSM1009596 SRA059058 SRX189707 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 9 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576770 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576770 GSM1009597 SRA059058 SRX189708 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 10 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576771 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576771 GSM1009598 SRA059058 SRX189709 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 11 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576772 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576772 GSM1009599 SRA059058 SRX189710 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 12 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576773 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576773 GSM1009600 SRA059058 SRX189711 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 13 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576774 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576774 GSM1009601 SRA059058 SRX189712 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 14 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576775 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576775 GSM1009602 SRA059058 SRX189713 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 15 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576776 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/000563/SRR576776 GSM1009603 SRA059058 SRX189714 ChIP-Seq SINGLE SRP015902 PRJNA175996 41161 16 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development 24336765 47807 SRP015902 SRR576777 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000563/SRR576777 GSM1009604 SRA059058 SRX189715 ChIP-Seq SINGLE SRP015902 PRJNA175996 41338 1 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579545 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579545 GSM1015150 SRA059267 SRX191149 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 2 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579546 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579546 GSM1015151 SRA059267 SRX191150 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 3 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579547 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579547 GSM1015152 SRA059267 SRX191151 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 4 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579548 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579548 GSM1015153 SRA059267 SRX191152 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 5 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579549 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579549 GSM1015154 SRA059267 SRX191153 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 6 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579550 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579550 GSM1015155 SRA059267 SRX191154 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 7 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579551 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579551 GSM1015156 SRA059267 SRX191155 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 8 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579552 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579552 GSM1015157 SRA059267 SRX191156 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 9 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579553 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579553 GSM1015158 SRA059267 SRX191157 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 10 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579554 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579554 GSM1015159 SRA059267 SRX191158 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 11 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579555 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579555 GSM1015160 SRA059267 SRX191159 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 12 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579556 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579556 GSM1015161 SRA059267 SRX191160 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 13 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579557 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579557 GSM1015162 SRA059267 SRX191161 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 14 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579558 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579558 GSM1015163 SRA059267 SRX191162 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 15 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579559 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579559 GSM1015164 SRA059267 SRX191163 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 16 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579560 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579560 GSM1015165 SRA059267 SRX191164 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 17 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579561 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579561 GSM1015166 SRA059267 SRX191165 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 18 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579562 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579562 GSM1015167 SRA059267 SRX191166 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 19 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579563 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579563 GSM1015168 SRA059267 SRX191167 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 20 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579564 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579564 GSM1015169 SRA059267 SRX191168 RNA-Seq PAIRED SRP015997 PRJNA176589 41338 21 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq 23258890 46474 SRP015997 SRR579565 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/000565/SRR579565 GSM1015170 SRA059267 SRX191169 RNA-Seq PAIRED SRP015997 PRJNA176589 43512 1 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648795 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648795 GSM1064674 SRA064777 SRX217137 OTHER SINGLE SRP017952 PRJNA186672 43512 2 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648796 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648796 GSM1064675 SRA064777 SRX217138 OTHER SINGLE SRP017952 PRJNA186672 43512 3 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648797 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648797 GSM1064675 SRA064777 SRX217138 OTHER SINGLE SRP017952 PRJNA186672 43512 4 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648798 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648798 GSM1064676 SRA064777 SRX217139 OTHER SINGLE SRP017952 PRJNA186672 43512 5 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648799 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648799 GSM1064676 SRA064777 SRX217139 OTHER SINGLE SRP017952 PRJNA186672 43512 6 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648800 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648800 GSM1064677 SRA064777 SRX217140 OTHER SINGLE SRP017952 PRJNA186672 43512 7 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648801 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648801 GSM1064678 SRA064777 SRX217141 OTHER SINGLE SRP017952 PRJNA186672 43512 8 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648802 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648802 GSM1064678 SRA064777 SRX217141 OTHER SINGLE SRP017952 PRJNA186672 43512 9 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648803 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648803 GSM1064679 SRA064777 SRX217142 OTHER SINGLE SRP017952 PRJNA186672 43512 10 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648804 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648804 GSM1064679 SRA064777 SRX217142 OTHER SINGLE SRP017952 PRJNA186672 43512 11 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648805 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648805 GSM1064680 SRA064777 SRX217143 OTHER SINGLE SRP017952 PRJNA186672 43512 12 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648806 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648806 GSM1064680 SRA064777 SRX217143 OTHER SINGLE SRP017952 PRJNA186672 43512 13 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648807 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648807 GSM1064681 SRA064777 SRX217144 OTHER SINGLE SRP017952 PRJNA186672 43512 14 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648808 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648808 GSM1064682 SRA064777 SRX217145 OTHER SINGLE SRP017952 PRJNA186672 43512 15 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648809 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648809 GSM1064682 SRA064777 SRX217145 OTHER SINGLE SRP017952 PRJNA186672 43512 16 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648810 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648810 GSM1064683 SRA064777 SRX217146 OTHER SINGLE SRP017952 PRJNA186672 43512 17 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648811 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648811 GSM1064683 SRA064777 SRX217146 OTHER SINGLE SRP017952 PRJNA186672 43512 18 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648812 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648812 GSM1064684 SRA064777 SRX217147 OTHER SINGLE SRP017952 PRJNA186672 43512 19 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648813 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648813 GSM1064685 SRA064777 SRX217148 OTHER SINGLE SRP017952 PRJNA186672 43512 20 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648814 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648814 GSM1064685 SRA064777 SRX217148 OTHER SINGLE SRP017952 PRJNA186672 43512 21 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648815 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648815 GSM1064686 SRA064777 SRX217149 OTHER SINGLE SRP017952 PRJNA186672 43512 22 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648816 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648816 GSM1064686 SRA064777 SRX217149 OTHER SINGLE SRP017952 PRJNA186672 43512 23 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648817 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648817 GSM1064687 SRA064777 SRX217150 OTHER SINGLE SRP017952 PRJNA186672 43512 24 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648818 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648818 GSM1064688 SRA064777 SRX217151 OTHER SINGLE SRP017952 PRJNA186672 43512 25 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648819 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648819 GSM1064688 SRA064777 SRX217151 OTHER SINGLE SRP017952 PRJNA186672 43512 26 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648820 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648820 GSM1064689 SRA064777 SRX217152 OTHER SINGLE SRP017952 PRJNA186672 43512 27 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648821 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648821 GSM1064689 SRA064777 SRX217152 OTHER SINGLE SRP017952 PRJNA186672 43512 28 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648822 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648822 GSM1064690 SRA064777 SRX217153 OTHER SINGLE SRP017952 PRJNA186672 43512 29 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648823 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648823 GSM1064691 SRA064777 SRX217154 OTHER SINGLE SRP017952 PRJNA186672 43512 30 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648824 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648824 GSM1064691 SRA064777 SRX217154 OTHER SINGLE SRP017952 PRJNA186672 43512 31 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648825 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648825 GSM1064692 SRA064777 SRX217155 OTHER SINGLE SRP017952 PRJNA186672 43512 32 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648826 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648826 GSM1064692 SRA064777 SRX217155 OTHER SINGLE SRP017952 PRJNA186672 43512 33 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648827 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648827 GSM1064693 SRA064777 SRX217156 OTHER SINGLE SRP017952 PRJNA186672 43512 34 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648828 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648828 GSM1064693 SRA064777 SRX217156 OTHER SINGLE SRP017952 PRJNA186672 43512 35 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648829 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648829 GSM1064694 SRA064777 SRX217157 OTHER SINGLE SRP017952 PRJNA186672 43512 36 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648830 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648830 GSM1064695 SRA064777 SRX217158 OTHER SINGLE SRP017952 PRJNA186672 43512 37 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648831 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648831 GSM1064695 SRA064777 SRX217158 OTHER SINGLE SRP017952 PRJNA186672 43512 38 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648832 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648832 GSM1064696 SRA064777 SRX217159 OTHER SINGLE SRP017952 PRJNA186672 43512 39 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648833 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648833 GSM1064696 SRA064777 SRX217159 OTHER SINGLE SRP017952 PRJNA186672 43512 40 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648834 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648834 GSM1064697 SRA064777 SRX217160 OTHER SINGLE SRP017952 PRJNA186672 43512 41 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues. 23467541 46753 SRP017952 SRR648835 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000633/SRR648835 GSM1064697 SRA064777 SRX217160 OTHER SINGLE SRP017952 PRJNA186672 43520 1 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649360 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000634/SRR649360 GSM1064822 SRA064905 SRX217680 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 2 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649361 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649361 GSM1064824 SRA064905 SRX217681 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 3 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649362 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649362 GSM1064826 SRA064905 SRX217682 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 4 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649363 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649363 GSM1064828 SRA064905 SRX217683 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 5 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649364 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649364 GSM1064829 SRA064905 SRX217684 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 6 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649365 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000634/SRR649365 GSM1064832 SRA064905 SRX217685 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 7 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649366 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000634/SRR649366 GSM1064834 SRA064905 SRX217686 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 8 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649367 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000634/SRR649367 GSM1064834 SRA064905 SRX217686 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 9 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649368 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000634/SRR649368 GSM1064837 SRA064905 SRX217687 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 10 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649369 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000634/SRR649369 GSM1064840 SRA064905 SRX217688 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 11 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649370 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/000634/SRR649370 GSM1064840 SRA064905 SRX217688 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 12 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649371 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649371 GSM1064841 SRA064905 SRX217689 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 13 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649372 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649372 GSM1064842 SRA064905 SRX217690 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 14 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649373 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649373 GSM1064843 SRA064905 SRX217691 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 15 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649374 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649374 GSM1064844 SRA064905 SRX217692 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 16 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649375 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649375 GSM1064845 SRA064905 SRX217693 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 17 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649376 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649376 GSM1064846 SRA064905 SRX217694 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 18 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649377 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649377 GSM1064847 SRA064905 SRX217695 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 19 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649378 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649378 GSM1064848 SRA064905 SRX217696 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 20 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649379 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649379 GSM1064849 SRA064905 SRX217697 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 21 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649380 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649380 GSM1064849 SRA064905 SRX217697 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 22 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649381 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649381 GSM1064850 SRA064905 SRX217698 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 23 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649382 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649382 GSM1064851 SRA064905 SRX217699 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 24 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649383 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649383 GSM1064852 SRA064905 SRX217700 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 25 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649384 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649384 GSM1064852 SRA064905 SRX217700 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 26 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649385 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649385 GSM1064853 SRA064905 SRX217701 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 27 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649386 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649386 GSM1064854 SRA064905 SRX217702 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 28 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649387 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649387 GSM1064854 SRA064905 SRX217702 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 29 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649388 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649388 GSM1064854 SRA064905 SRX217702 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 30 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649389 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649389 GSM1064855 SRA064905 SRX217703 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 31 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649390 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649390 GSM1064855 SRA064905 SRX217703 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 32 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649391 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649391 GSM1064856 SRA064905 SRX217704 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 33 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649392 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649392 GSM1064857 SRA064905 SRX217705 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 34 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649393 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649393 GSM1064858 SRA064905 SRX217706 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 35 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649394 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649394 GSM1064859 SRA064905 SRX217707 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 36 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649395 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649395 GSM1064860 SRA064905 SRX217708 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 37 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649396 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649396 GSM1064861 SRA064905 SRX217709 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 38 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649397 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649397 GSM1064862 SRA064905 SRX217710 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 39 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649398 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649398 GSM1064863 SRA064905 SRX217711 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 40 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649399 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649399 GSM1064864 SRA064905 SRX217712 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 41 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR649400 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000634/SRR649400 GSM1064865 SRA064905 SRX217713 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 42 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943339 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943339 GSM1196040 SRA064905 SRX328074 RNA-Seq PAIRED SRP017959 PRJNA186646 43520 43 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943357 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943357 GSM1196041 SRA064905 SRX328092 RNA-Seq PAIRED SRP017959 PRJNA186646 43520 44 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943358 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943358 GSM1196042 SRA064905 SRX328093 RNA-Seq PAIRED SRP017959 PRJNA186646 43520 45 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943359 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943359 GSM1196043 SRA064905 SRX328094 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 46 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943340 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943340 GSM1196044 SRA064905 SRX328075 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 47 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943341 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943341 GSM1196045 SRA064905 SRX328076 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 48 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943342 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943342 GSM1196046 SRA064905 SRX328077 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 49 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943343 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943343 GSM1196047 SRA064905 SRX328078 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 50 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943344 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943344 GSM1196048 SRA064905 SRX328079 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 51 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943345 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943345 GSM1196049 SRA064905 SRX328080 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 52 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943346 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943346 GSM1196050 SRA064905 SRX328081 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 53 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943347 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943347 GSM1196051 SRA064905 SRX328082 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 54 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943348 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943348 GSM1196052 SRA064905 SRX328083 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 55 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943349 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943349 GSM1196053 SRA064905 SRX328084 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 56 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943350 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943350 GSM1196054 SRA064905 SRX328085 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 57 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943351 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943351 GSM1196055 SRA064905 SRX328086 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 58 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943352 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943352 GSM1196056 SRA064905 SRX328087 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 59 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943353 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943353 GSM1196057 SRA064905 SRX328088 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 60 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943354 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943354 GSM1196058 SRA064905 SRX328089 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 61 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943355 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943355 GSM1196059 SRA064905 SRX328090 RNA-Seq SINGLE SRP017959 PRJNA186646 43520 62 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis. 24463510 54076 SRP017959 SRR943356 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/000921/SRR943356 GSM1196060 SRA064905 SRX328091 RNA-Seq SINGLE SRP017959 PRJNA186646 43652 1 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651117 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651117 GSM1067623 SRA065319 SRX218733 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 2 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651118 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651118 GSM1067623 SRA065319 SRX218733 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 3 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651119 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651119 GSM1067624 SRA065319 SRX218734 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 4 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651120 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651120 GSM1067624 SRA065319 SRX218734 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 5 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651121 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651121 GSM1067625 SRA065319 SRX218735 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 6 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651122 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651122 GSM1067626 SRA065319 SRX218736 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 7 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651123 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651123 GSM1067626 SRA065319 SRX218736 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 8 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651124 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651124 GSM1067627 SRA065319 SRX218737 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 9 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651125 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651125 GSM1067628 SRA065319 SRX218738 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 10 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651126 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651126 GSM1067629 SRA065319 SRX218739 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 11 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651127 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651127 GSM1067630 SRA065319 SRX218740 RNA-Seq SINGLE SRP018091 PRJNA186932 43652 12 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 SRR651128 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/000635/SRR651128 GSM1067631 SRA065319 SRX218741 RNA-Seq SINGLE SRP018091 PRJNA186932 45786 1 Panna Tandon Cardiac transcriptome of Tcf21-depleted Xenopus embryos The aim of the approach was to use RNAseq analysis to identify genes expressed in Xenopus epicardium that were affected by embryonic depletion of the Panna Tandon, Frank Conlon, Nirav Amin mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII. 23637334 47035 SRP020536 SRR808992 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/000790/SRR808992 GSM1115088 SRA072600 SRX260070 RNA-Seq SINGLE SRP020536 PRJNA196315 45786 2 Panna Tandon Cardiac transcriptome of Tcf21-depleted Xenopus embryos The aim of the approach was to use RNAseq analysis to identify genes expressed in Xenopus epicardium that were affected by embryonic depletion of the Panna Tandon, Frank Conlon, Nirav Amin mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII. 23637334 47035 SRP020536 SRR808993 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/000790/SRR808993 GSM1115089 SRA072600 SRX260071 RNA-Seq SINGLE SRP020536 PRJNA196315 48560 1 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926401 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926401 GSM1180932 SRA092176 SRX318201 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 2 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926402 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926402 GSM1180933 SRA092176 SRX318202 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 3 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926403 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926403 GSM1180934 SRA092176 SRX318203 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 4 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926404 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926404 GSM1180935 SRA092176 SRX318204 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 5 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926405 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926405 GSM1180936 SRA092176 SRX318205 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 6 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926406 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926406 GSM1180937 SRA092176 SRX318206 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 7 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926407 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926407 GSM1180938 SRA092176 SRX318207 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 8 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926408 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926408 GSM1180939 SRA092176 SRX318208 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 9 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926409 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926409 GSM1180940 SRA092176 SRX318209 ChIP-Seq SINGLE SRP026570 PRJNA210646 48560 10 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 SRR926410 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/000904/SRR926410 GSM1180941 SRA092176 SRX318210 ChIP-Seq SINGLE SRP026570 PRJNA210646 48663 1 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 SRR929119 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/000907/SRR929119 GSM1183056 SRA092415 SRX319533 RNA-Seq PAIRED SRP026685 PRJNA210967 48663 2 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 SRR929120 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/000907/SRR929120 GSM1183057 SRA092415 SRX319534 RNA-Seq PAIRED SRP026685 PRJNA210967 48663 3 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 SRR929121 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/000907/SRR929121 GSM1183058 SRA092415 SRX319535 RNA-Seq PAIRED SRP026685 PRJNA210967 48663 4 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 SRR929122 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/000907/SRR929122 GSM1183059 SRA092415 SRX319536 RNA-Seq PAIRED SRP026685 PRJNA210967 48663 5 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 SRR929123 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/000907/SRR929123 GSM1183060 SRA092415 SRX319537 RNA-Seq PAIRED SRP026685 PRJNA210967 48663 6 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 SRR929124 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/000907/SRR929124 GSM1183061 SRA092415 SRX319538 RNA-Seq PAIRED SRP026685 PRJNA210967 48663 7 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 SRR929125 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/000907/SRR929125 GSM1183062 SRA092415 SRX319539 RNA-Seq PAIRED SRP026685 PRJNA210967 50593 1 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control 24424412 51735 SRP029582 SRR1276213 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/001246/SRR1276213 GSM1224372 SRA100059 SRX345032 RNA-Seq PAIRED SRP029582 PRJNA218018 50593 2 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control 24424412 51735 SRP029582 SRR1276214 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/001246/SRR1276214 GSM1224373 SRA100059 SRX345033 RNA-Seq PAIRED SRP029582 PRJNA218018 50593 3 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control 24424412 51735 SRP029582 SRR1276215 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/001246/SRR1276215 GSM1224374 SRA100059 SRX345034 RNA-Seq PAIRED SRP029582 PRJNA218018 50593 4 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control 24424412 51735 SRP029582 SRR1276216 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/001246/SRR1276216 GSM1224375 SRA100059 SRX345035 RNA-Seq PAIRED SRP029582 PRJNA218018 50593 5 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control 24424412 51735 SRP029582 SRR965781 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000943/SRR965781 GSM1224376 SRA100059 SRX345036 ChIP-Seq SINGLE SRP029582 PRJNA218018 50593 6 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control 24424412 51735 SRP029582 SRR965782 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/000943/SRR965782 GSM1224377 SRA100059 SRX345037 ChIP-Seq SINGLE SRP029582 PRJNA218018 52809 1 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039856 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039856 GSM1276537 SRA114402 SRX384666 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 2 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039857 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039857 GSM1276538 SRA114402 SRX384667 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 3 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039858 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039858 GSM1276539 SRA114402 SRX384668 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 4 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039859 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039859 GSM1276540 SRA114402 SRX384669 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 5 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039860 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039860 GSM1276541 SRA114402 SRX384670 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 6 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039861 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039861 GSM1276542 SRA114402 SRX384671 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 7 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039862 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001015/SRR1039862 GSM1276543 SRA114402 SRX384672 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 8 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039863 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001015/SRR1039863 GSM1276544 SRA114402 SRX384673 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 9 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039864 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039864 GSM1276545 SRA114402 SRX384674 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 10 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039865 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001015/SRR1039865 GSM1276546 SRA114402 SRX384675 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 11 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039866 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039866 GSM1276547 SRA114402 SRX384676 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 12 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039867 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039867 GSM1276548 SRA114402 SRX384677 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 13 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146617 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146617 GSM1276549 SRA114402 SRX384678 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 14 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039869 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039869 GSM1276550 SRA114402 SRX384679 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 15 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039870 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039870 GSM1276551 SRA114402 SRX384680 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 16 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039871 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039871 GSM1276552 SRA114402 SRX384681 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 17 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039872 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039872 GSM1276553 SRA114402 SRX384682 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 18 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039873 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039873 GSM1276554 SRA114402 SRX384683 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 19 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039874 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001015/SRR1039874 GSM1276555 SRA114402 SRX384684 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 20 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039875 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039875 GSM1276556 SRA114402 SRX384685 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 21 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039876 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039876 GSM1276557 SRA114402 SRX384686 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 22 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039877 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001015/SRR1039877 GSM1276558 SRA114402 SRX384687 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 23 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039878 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039878 GSM1276559 SRA114402 SRX384688 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 24 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039879 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039879 GSM1276560 SRA114402 SRX384689 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 25 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039880 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001015/SRR1039880 GSM1276561 SRA114402 SRX384690 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 26 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039881 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039881 GSM1276562 SRA114402 SRX384691 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 27 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039882 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039882 GSM1276563 SRA114402 SRX384692 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 28 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146618 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001119/SRR1146618 GSM1276564 SRA114402 SRX384693 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 29 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1039884 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/001015/SRR1039884 GSM1276565 SRA114402 SRX384694 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 30 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146615 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146615 GSM1276566 SRA114402 SRX384695 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 31 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146542 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146542 GSM1316794 SRA114402 SRX451671 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 32 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146543 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146543 GSM1316795 SRA114402 SRX451672 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 33 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146544 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146544 GSM1316796 SRA114402 SRX451673 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 34 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146545 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146545 GSM1316797 SRA114402 SRX451674 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 35 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146546 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146546 GSM1316798 SRA114402 SRX451675 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 36 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146547 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146547 GSM1316799 SRA114402 SRX451676 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 37 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146548 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146548 GSM1316800 SRA114402 SRX451677 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 38 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146549 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146549 GSM1316801 SRA114402 SRX451678 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 39 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146550 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146550 GSM1316802 SRA114402 SRX451679 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 40 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146551 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146551 GSM1316803 SRA114402 SRX451680 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 41 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146552 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146552 GSM1316804 SRA114402 SRX451681 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 42 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146553 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146553 GSM1316805 SRA114402 SRX451682 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 43 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146554 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146554 GSM1316806 SRA114402 SRX451683 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 44 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146555 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146555 GSM1316807 SRA114402 SRX451684 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 45 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146556 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146556 GSM1316808 SRA114402 SRX451685 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 46 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146557 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146557 GSM1316809 SRA114402 SRX451686 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 47 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146558 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146558 GSM1316810 SRA114402 SRX451687 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 48 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146559 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146559 GSM1316811 SRA114402 SRX451688 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 49 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146560 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/001119/SRR1146560 GSM1316812 SRA114402 SRX451689 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 50 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146561 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146561 GSM1316813 SRA114402 SRX451690 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 51 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146562 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146562 GSM1316814 SRA114402 SRX451691 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 52 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146563 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146563 GSM1316815 SRA114402 SRX451692 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 53 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146564 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146564 GSM1316816 SRA114402 SRX451693 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 54 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146565 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146565 GSM1316817 SRA114402 SRX451694 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 55 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146566 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146566 GSM1316818 SRA114402 SRX451695 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 56 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146567 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146567 GSM1316819 SRA114402 SRX451696 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 57 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146568 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146568 GSM1316820 SRA114402 SRX451697 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 58 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146569 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146569 GSM1316821 SRA114402 SRX451698 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 59 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146570 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146570 GSM1316822 SRA114402 SRX451699 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 60 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146571 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146571 GSM1316823 SRA114402 SRX451700 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 61 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146572 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146572 GSM1316824 SRA114402 SRX451701 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 62 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146573 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146573 GSM1316825 SRA114402 SRX451702 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 63 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146574 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146574 GSM1316826 SRA114402 SRX451703 RNA-Seq SINGLE SRP033369 PRJNA230112 52809 64 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 SRR1146575 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001119/SRR1146575 GSM1316827 SRA114402 SRX451704 RNA-Seq SINGLE SRP033369 PRJNA230112 53652 1 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 SRR1060744 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/001035/SRR1060744 GSM1298090 SRA122377 SRX399447 ChIP-Seq SINGLE SRP034730 PRJNA232589 53652 2 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 SRR1060745 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/001035/SRR1060745 GSM1298091 SRA122377 SRX399448 ChIP-Seq SINGLE SRP034730 PRJNA232589 53652 3 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 SRR1060746 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/001035/SRR1060746 GSM1298092 SRA122377 SRX399449 ChIP-Seq SINGLE SRP034730 PRJNA232589 53652 4 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 SRR1060747 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/001035/SRR1060747 GSM1298093 SRA122377 SRX399450 ChIP-Seq SINGLE SRP034730 PRJNA232589 53652 5 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 SRR1060748 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/001035/SRR1060748 GSM1298094 SRA122377 SRX399451 ChIP-Seq SINGLE SRP034730 PRJNA232589 53653 1 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 SRR1060749 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/001035/SRR1060749 GSM1298095 SRA122378 SRX399452 RNA-Seq SINGLE SRP034731 PRJNA232590 53653 2 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 SRR1060750 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/001035/SRR1060750 GSM1298096 SRA122378 SRX399453 RNA-Seq SINGLE SRP034731 PRJNA232590 53653 3 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 SRR1060751 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001035/SRR1060751 GSM1298097 SRA122378 SRX399454 RNA-Seq SINGLE SRP034731 PRJNA232590 53653 4 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 SRR1060752 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001035/SRR1060752 GSM1298098 SRA122378 SRX399455 RNA-Seq SINGLE SRP034731 PRJNA232590 56000 1 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199229 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001171/SRR1199229 GSM1350502 SRA147084 SRX495638 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 2 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199230 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001171/SRR1199230 GSM1350503 SRA147084 SRX495639 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 3 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199231 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001171/SRR1199231 GSM1350504 SRA147084 SRX495640 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 4 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199232 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199232 GSM1350505 SRA147084 SRX495641 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 5 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199233 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199233 GSM1350506 SRA147084 SRX495642 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 6 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199234 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001171/SRR1199234 GSM1350506 SRA147084 SRX495642 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 7 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199235 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199235 GSM1350507 SRA147084 SRX495643 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 8 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199236 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199236 GSM1350508 SRA147084 SRX495644 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 9 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793867 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793867 GSM1350508 SRA147084 SRX495644 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 10 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793868 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793868 GSM1350509 SRA147084 SRX495645 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 11 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199237 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001171/SRR1199237 GSM1350509 SRA147084 SRX495645 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 12 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199238 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001171/SRR1199238 GSM1350510 SRA147084 SRX495646 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 13 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793869 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793869 GSM1350510 SRA147084 SRX495646 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 14 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793870 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793870 GSM1350511 SRA147084 SRX495647 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 15 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199239 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/001171/SRR1199239 GSM1350511 SRA147084 SRX495647 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 16 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199240 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/001171/SRR1199240 GSM1350512 SRA147084 SRX495648 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 17 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793871 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793871 GSM1350512 SRA147084 SRX495648 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 18 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793933 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793933 GSM1350512 SRA147084 SRX495648 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 19 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793935 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/001751/SRR1793935 GSM1350512 SRA147084 SRX495648 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 20 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793872 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793872 GSM1350513 SRA147084 SRX495649 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 21 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199241 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199241 GSM1350513 SRA147084 SRX495649 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 22 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199242 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199242 GSM1350514 SRA147084 SRX495650 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 23 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793873 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793873 GSM1350514 SRA147084 SRX495650 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 24 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793874 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793874 GSM1350515 SRA147084 SRX495651 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 25 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199243 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199243 GSM1350515 SRA147084 SRX495651 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 26 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199244 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001171/SRR1199244 GSM1350516 SRA147084 SRX495652 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 27 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793875 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001751/SRR1793875 GSM1350516 SRA147084 SRX495652 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 28 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793828 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/001751/SRR1793828 GSM1350517 SRA147084 SRX495653 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 29 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199245 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001171/SRR1199245 GSM1350517 SRA147084 SRX495653 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 30 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199246 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/001171/SRR1199246 GSM1350518 SRA147084 SRX495654 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 31 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793829 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/001751/SRR1793829 GSM1350518 SRA147084 SRX495654 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 32 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1793830 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/001751/SRR1793830 GSM1350519 SRA147084 SRX495655 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 33 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199247 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/001171/SRR1199247 GSM1350519 SRA147084 SRX495655 ChIP-Seq PAIRED SRP040298 PRJNA242234 56000 34 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199248 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199248 GSM1350520 SRA147084 SRX495656 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 35 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199249 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199249 GSM1350521 SRA147084 SRX495657 ChIP-Seq SINGLE SRP040298 PRJNA242234 56000 36 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199250 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199250 GSM1350522 SRA147084 SRX495658 RNA-Seq SINGLE SRP040298 PRJNA242234 56000 37 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199251 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199251 GSM1350522 SRA147084 SRX495658 RNA-Seq SINGLE SRP040298 PRJNA242234 56000 38 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199252 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199252 GSM1350523 SRA147084 SRX495659 RNA-Seq SINGLE SRP040298 PRJNA242234 56000 39 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199253 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199253 GSM1350523 SRA147084 SRX495659 RNA-Seq SINGLE SRP040298 PRJNA242234 56000 40 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199254 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199254 GSM1350524 SRA147084 SRX495660 RNA-Seq SINGLE SRP040298 PRJNA242234 56000 41 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199255 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199255 GSM1350524 SRA147084 SRX495660 RNA-Seq SINGLE SRP040298 PRJNA242234 56000 42 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199256 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199256 GSM1350525 SRA147084 SRX495661 RNA-Seq SINGLE SRP040298 PRJNA242234 56000 43 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq 25205067 49423 SRP040298 SRR1199257 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001171/SRR1199257 GSM1350525 SRA147084 SRX495661 RNA-Seq SINGLE SRP040298 PRJNA242234 56169 1 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204599 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001176/SRR1204599 GSM1357032 SRA149110 SRX500916 ChIP-Seq SINGLE SRP040548 PRJNA242626 56169 2 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204600 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204600 GSM1357033 SRA149110 SRX500917 ChIP-Seq SINGLE SRP040548 PRJNA242626 56169 3 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204601 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204601 GSM1357034 SRA149110 SRX500918 ChIP-Seq SINGLE SRP040548 PRJNA242626 56169 4 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204602 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204602 GSM1357035 SRA149110 SRX500919 ChIP-Seq SINGLE SRP040548 PRJNA242626 56169 5 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204604 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204604 GSM1357037 SRA149110 SRX500921 ChIP-Seq SINGLE SRP040548 PRJNA242626 56169 6 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204605 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204605 GSM1357038 SRA149110 SRX500922 ChIP-Seq SINGLE SRP040548 PRJNA242626 56169 7 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204606 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204606 GSM1357039 SRA149110 SRX500923 RNA-Seq SINGLE SRP040548 PRJNA242626 56169 8 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204607 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204607 GSM1357040 SRA149110 SRX500924 RNA-Seq SINGLE SRP040548 PRJNA242626 56169 9 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204608 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204608 GSM1357041 SRA149110 SRX500925 RNA-Seq SINGLE SRP040548 PRJNA242626 56169 10 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene. 25669884 50519 SRP040548 SRR1204609 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/001176/SRR1204609 GSM1357042 SRA149110 SRX500926 RNA-Seq SINGLE SRP040548 PRJNA242626 56242 1 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205735 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205735 GSM1357541 SRA149315 SRX501597 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 2 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205736 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205736 GSM1357542 SRA149315 SRX501598 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 3 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205737 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205737 GSM1357543 SRA149315 SRX501599 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 4 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205738 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205738 GSM1357544 SRA149315 SRX501600 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 5 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205739 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205739 GSM1357545 SRA149315 SRX501601 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 6 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205740 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205740 GSM1357546 SRA149315 SRX501602 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 7 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205741 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205741 GSM1357547 SRA149315 SRX501603 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 8 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205742 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205742 GSM1357548 SRA149315 SRX501604 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 9 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205743 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205743 GSM1357549 SRA149315 SRX501605 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 10 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205744 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205744 GSM1357550 SRA149315 SRX501606 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 11 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205745 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205745 GSM1357551 SRA149315 SRX501607 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 12 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205746 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205746 GSM1357552 SRA149315 SRX501608 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 13 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205747 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205747 GSM1357553 SRA149315 SRX501609 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 14 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205748 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205748 GSM1357554 SRA149315 SRX501610 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 15 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205749 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205749 GSM1357555 SRA149315 SRX501611 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 16 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205750 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205750 GSM1357556 SRA149315 SRX501612 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 17 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205751 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205751 GSM1357557 SRA149315 SRX501613 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 18 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205752 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205752 GSM1357558 SRA149315 SRX501614 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 19 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205753 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205753 GSM1357559 SRA149315 SRX501615 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 20 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205754 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205754 GSM1357560 SRA149315 SRX501616 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 21 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205755 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205755 GSM1357561 SRA149315 SRX501617 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 22 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205756 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205756 GSM1357562 SRA149315 SRX501618 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 23 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205757 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205757 GSM1357563 SRA149315 SRX501619 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 24 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205758 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/001177/SRR1205758 GSM1357564 SRA149315 SRX501620 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 25 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205759 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205759 GSM1357565 SRA149315 SRX501621 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 26 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205760 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205760 GSM1357566 SRA149315 SRX501622 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 27 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205761 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205761 GSM1357567 SRA149315 SRX501623 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 28 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205762 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205762 GSM1357568 SRA149315 SRX501624 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 29 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205763 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205763 GSM1357569 SRA149315 SRX501625 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 30 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205764 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205764 GSM1357570 SRA149315 SRX501626 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 31 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205765 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205765 GSM1357571 SRA149315 SRX501627 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 32 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205766 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205766 GSM1357572 SRA149315 SRX501628 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 33 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205767 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205767 GSM1357573 SRA149315 SRX501629 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 34 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205768 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205768 GSM1357574 SRA149315 SRX501630 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 35 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205769 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205769 GSM1357575 SRA149315 SRX501631 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 36 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205770 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205770 GSM1357576 SRA149315 SRX501632 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 37 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205771 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205771 GSM1357577 SRA149315 SRX501633 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 38 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205772 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205772 GSM1357578 SRA149315 SRX501634 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 39 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205773 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205773 GSM1357579 SRA149315 SRX501635 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 40 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205774 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205774 GSM1357580 SRA149315 SRX501636 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 41 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205775 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205775 GSM1357581 SRA149315 SRX501637 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 42 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205776 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205776 GSM1357582 SRA149315 SRX501638 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 43 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205777 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205777 GSM1357583 SRA149315 SRX501639 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 44 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205778 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205778 GSM1357584 SRA149315 SRX501640 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 45 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205779 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205779 GSM1357585 SRA149315 SRX501641 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 46 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205780 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205780 GSM1357586 SRA149315 SRX501642 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 47 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205781 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205781 GSM1357587 SRA149315 SRX501643 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 48 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205782 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205782 GSM1357588 SRA149315 SRX501644 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 49 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205783 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205783 GSM1357589 SRA149315 SRX501645 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 50 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205784 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205784 GSM1357590 SRA149315 SRX501646 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 51 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205785 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205785 GSM1357591 SRA149315 SRX501647 RNA-Seq PAIRED SRP040589 PRJNA242712 56242 52 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 SRR1205786 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001177/SRR1205786 GSM1357592 SRA149315 SRX501648 RNA-Seq PAIRED SRP040589 PRJNA242712 56586 1 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1222414 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001193/SRR1222414 GSM1364749 SRA156772 SRX512838 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 2 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1222415 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001193/SRR1222415 GSM1364750 SRA156772 SRX512839 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 3 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1222416 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001193/SRR1222416 GSM1364751 SRA156772 SRX512840 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 4 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1222417 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001193/SRR1222417 GSM1364752 SRA156772 SRX512841 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 5 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1222418 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001193/SRR1222418 GSM1364753 SRA156772 SRX512842 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 6 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509447 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509447 GSM1430926 SRA156772 SRX648247 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 7 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509448 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509448 GSM1430927 SRA156772 SRX648248 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 8 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509449 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509449 GSM1430928 SRA156772 SRX648249 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 9 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509450 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509450 GSM1430929 SRA156772 SRX648250 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 10 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509451 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509451 GSM1430930 SRA156772 SRX648251 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 11 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509452 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509452 GSM1430931 SRA156772 SRX648252 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 12 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509453 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509453 GSM1430932 SRA156772 SRX648253 RNA-Seq SINGLE SRP041021 PRJNA244000 56586 13 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 SRR1509454 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001474/SRR1509454 GSM1430933 SRA156772 SRX648254 RNA-Seq SINGLE SRP041021 PRJNA244000 56680 1 Maria Warnefors MicroRNA editing in Xenopus tropicalis We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann Sequencing of 2 small RNA sequencing libraries 24964909 50469 SRP041076 SRR1231993 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001203/SRR1231993 GSM1366781 SRA157273 SRX514968 miRNA-Seq SINGLE SRP041076 PRJNA244299 56680 2 Maria Warnefors MicroRNA editing in Xenopus tropicalis We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann Sequencing of 2 small RNA sequencing libraries 24964909 50469 SRP041076 SRR1231994 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/001203/SRR1231994 GSM1366782 SRA157273 SRX514969 miRNA-Seq SINGLE SRP041076 PRJNA244299 58420 1 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382030 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382030 GSM1410597 SRA170144 SRX591680 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 2 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382031 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382031 GSM1410598 SRA170144 SRX591681 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 3 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382032 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382032 GSM1410599 SRA170144 SRX591682 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 4 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382033 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382033 GSM1410600 SRA170144 SRX591683 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 5 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382034 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382034 GSM1410601 SRA170144 SRX591684 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 6 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382035 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382035 GSM1410602 SRA170144 SRX591685 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 7 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382036 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382036 GSM1410603 SRA170144 SRX591686 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 8 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382037 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382037 GSM1410604 SRA170144 SRX591687 RNA-Seq PAIRED SRP043147 PRJNA252563 58420 9 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382038 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382038 GSM1410605 SRA170144 SRX591688 RNA-Seq SINGLE SRP043147 PRJNA252563 58420 10 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382039 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382039 GSM1410606 SRA170144 SRX591689 RNA-Seq SINGLE SRP043147 PRJNA252563 58420 11 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382040 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382040 GSM1410607 SRA170144 SRX591690 RNA-Seq SINGLE SRP043147 PRJNA252563 58420 12 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed. 26337391 51224 SRP043147 SRR1382041 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/001349/SRR1382041 GSM1410608 SRA170144 SRX591691 RNA-Seq SINGLE SRP043147 PRJNA252563 59309 1 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511454 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511454 GSM1434771 SRA174832 SRX649157 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 2 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511455 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511455 GSM1434772 SRA174832 SRX649158 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 3 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511456 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511456 GSM1434773 SRA174832 SRX649159 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 4 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511457 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511457 GSM1434774 SRA174832 SRX649160 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 5 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511458 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511458 GSM1434775 SRA174832 SRX649161 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 6 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511459 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511459 GSM1434776 SRA174832 SRX649162 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 7 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511460 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511460 GSM1434777 SRA174832 SRX649163 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 8 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511461 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511461 GSM1434778 SRA174832 SRX649164 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 9 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511462 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511462 GSM1434779 SRA174832 SRX649165 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 10 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511463 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511463 GSM1434780 SRA174832 SRX649166 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 11 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511464 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511464 GSM1434781 SRA174832 SRX649167 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 12 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511465 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511465 GSM1434782 SRA174832 SRX649168 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 13 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511466 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511466 GSM1434783 SRA174832 SRX649169 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 14 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511467 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511467 GSM1434784 SRA174832 SRX649170 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 15 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511468 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511468 GSM1434785 SRA174832 SRX649171 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 16 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511469 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511469 GSM1434786 SRA174832 SRX649172 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 17 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511470 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511470 GSM1434787 SRA174832 SRX649173 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 18 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511471 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511471 GSM1434788 SRA174832 SRX649174 RNA-Seq SINGLE SRP044238 PRJNA255038 59309 19 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511472 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511472 GSM1434789 SRA174832 SRX649175 ChIP-Seq SINGLE SRP044238 PRJNA255038 59309 20 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511473 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511473 GSM1434789 SRA174832 SRX649175 ChIP-Seq SINGLE SRP044238 PRJNA255038 59309 21 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511474 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511474 GSM1434790 SRA174832 SRX649176 ChIP-Seq SINGLE SRP044238 PRJNA255038 59309 22 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511475 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511475 GSM1434790 SRA174832 SRX649176 ChIP-Seq SINGLE SRP044238 PRJNA255038 59309 23 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511476 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511476 GSM1434791 SRA174832 SRX649177 ChIP-Seq SINGLE SRP044238 PRJNA255038 59309 24 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates. ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced; 2 biological replicates. Background was input prior to IP. 24934224 49750 SRP044238 SRR1511477 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001476/SRR1511477 GSM1434792 SRA174832 SRX649178 ChIP-Seq SINGLE SRP044238 PRJNA255038 63228 1 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649292 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649292 GSM1544070 SRA200904 SRX758227 RNA-Seq SINGLE SRP049739 PRJNA267016 63228 2 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649293 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649293 GSM1544071 SRA200904 SRX758228 RNA-Seq SINGLE SRP049739 PRJNA267016 63228 3 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649294 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649294 GSM1544072 SRA200904 SRX758229 RNA-Seq SINGLE SRP049739 PRJNA267016 63228 4 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649295 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649295 GSM1544073 SRA200904 SRX758230 RNA-Seq SINGLE SRP049739 PRJNA267016 63228 5 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649296 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649296 GSM1544074 SRA200904 SRX758231 RNA-Seq SINGLE SRP049739 PRJNA267016 63228 6 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649297 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649297 GSM1544075 SRA200904 SRX758232 RNA-Seq SINGLE SRP049739 PRJNA267016 63228 7 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649298 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649298 GSM1544076 SRA200904 SRX758233 ncRNA-Seq SINGLE SRP049739 PRJNA267016 63228 8 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649299 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649299 GSM1544077 SRA200904 SRX758234 ncRNA-Seq SINGLE SRP049739 PRJNA267016 63228 9 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649300 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649300 GSM1544078 SRA200904 SRX758235 RIP-Seq SINGLE SRP049739 PRJNA267016 63228 10 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649301 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649301 GSM1544079 SRA200904 SRX758236 RIP-Seq SINGLE SRP049739 PRJNA267016 63228 11 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein. Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats. Finally, we sequenced the piRNAs from the OSS cells 28031481 52877 SRP049739 SRR1649302 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/001610/SRR1649302 GSM1544080 SRA200904 SRX758237 RNA-Seq SINGLE SRP049739 PRJNA267016 64551 1 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736289 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736289 GSM1574071 SRA221631 SRX825218 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 2 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736290 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736290 GSM1574072 SRA221631 SRX825219 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 3 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736291 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736291 GSM1574073 SRA221631 SRX825220 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 4 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736292 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736292 GSM1574074 SRA221631 SRX825221 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 5 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736293 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736293 GSM1574075 SRA221631 SRX825222 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 6 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736294 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736294 GSM1574076 SRA221631 SRX825223 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 7 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736295 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736295 GSM1574077 SRA221631 SRX825224 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 8 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736296 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736296 GSM1574078 SRA221631 SRX825225 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 9 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736297 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736297 GSM1574079 SRA221631 SRX825226 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 10 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736298 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736298 GSM1574080 SRA221631 SRX825227 RNA-Seq SINGLE SRP051597 PRJNA271289 64551 11 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736299 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736299 GSM1574081 SRA221631 SRX825228 ChIP-Seq SINGLE SRP051597 PRJNA271289 64551 12 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736300 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736300 GSM1574082 SRA221631 SRX825229 ChIP-Seq SINGLE SRP051597 PRJNA271289 64551 13 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736301 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736301 GSM1574083 SRA221631 SRX825230 ChIP-Seq SINGLE SRP051597 PRJNA271289 64551 14 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP. 26443638 51355 SRP051597 SRR1736302 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/001695/SRR1736302 GSM1574084 SRA221631 SRX825231 ChIP-Seq SINGLE SRP051597 PRJNA271289 65785 1 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795628 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795628 GSM1606268 SRA237121 SRX870931 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 2 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795629 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795629 GSM1606269 SRA237121 SRX870932 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 3 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795630 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795630 GSM1606270 SRA237121 SRX870933 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 4 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795631 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795631 GSM1606271 SRA237121 SRX870934 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 5 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795632 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795632 GSM1606272 SRA237121 SRX870935 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 6 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795633 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795633 GSM1606273 SRA237121 SRX870936 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 7 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795634 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795634 GSM1606274 SRA237121 SRX870937 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 8 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795635 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795635 GSM1606275 SRA237121 SRX870938 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 9 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795636 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795636 GSM1606276 SRA237121 SRX870939 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 10 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795637 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795637 GSM1606277 SRA237121 SRX870940 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 11 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795638 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795638 GSM1606278 SRA237121 SRX870941 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 12 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795639 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795639 GSM1606279 SRA237121 SRX870942 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 13 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795640 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795640 GSM1606280 SRA237121 SRX870943 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 14 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795641 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795641 GSM1606281 SRA237121 SRX870944 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 15 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795642 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795642 GSM1606282 SRA237121 SRX870945 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 16 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795643 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795643 GSM1606283 SRA237121 SRX870946 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 17 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795644 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795644 GSM1606284 SRA237121 SRX870947 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 18 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795645 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795645 GSM1606285 SRA237121 SRX870948 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 19 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795646 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795646 GSM1606286 SRA237121 SRX870949 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 20 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795647 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795647 GSM1606287 SRA237121 SRX870950 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 21 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795648 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795648 GSM1606288 SRA237121 SRX870951 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 22 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795649 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795649 GSM1606289 SRA237121 SRX870952 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 23 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795650 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795650 GSM1606290 SRA237121 SRX870953 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 24 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795651 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795651 GSM1606291 SRA237121 SRX870954 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 25 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795652 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795652 GSM1606292 SRA237121 SRX870955 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 26 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795653 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795653 GSM1606293 SRA237121 SRX870956 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 27 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795654 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795654 GSM1606294 SRA237121 SRX870957 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 28 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795655 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795655 GSM1606295 SRA237121 SRX870958 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 29 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795656 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795656 GSM1606296 SRA237121 SRX870959 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 30 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795657 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795657 GSM1606297 SRA237121 SRX870960 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 31 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795658 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795658 GSM1606298 SRA237121 SRX870961 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 32 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795659 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795659 GSM1606299 SRA237121 SRX870962 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 33 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795660 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795660 GSM1606300 SRA237121 SRX870963 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 34 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795661 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795661 GSM1606301 SRA237121 SRX870964 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 35 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795662 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795662 GSM1606302 SRA237121 SRX870965 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 36 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795663 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795663 GSM1606303 SRA237121 SRX870966 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 37 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795664 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795664 GSM1606304 SRA237121 SRX870967 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 38 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795665 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795665 GSM1606305 SRA237121 SRX870968 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 39 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795666 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795666 GSM1606306 SRA237121 SRX870969 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 40 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795667 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795667 GSM1606307 SRA237121 SRX870970 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 41 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795668 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795668 GSM1606308 SRA237121 SRX870971 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 42 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795669 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795669 GSM1606309 SRA237121 SRX870972 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 43 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795670 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795670 GSM1606310 SRA237121 SRX870973 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 44 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795671 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795671 GSM1606311 SRA237121 SRX870974 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 45 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795672 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795672 GSM1606312 SRA237121 SRX870975 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 46 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795673 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795673 GSM1606313 SRA237121 SRX870976 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 47 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795674 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795674 GSM1606314 SRA237121 SRX870977 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 48 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795675 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795675 GSM1606315 SRA237121 SRX870978 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 49 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795676 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795676 GSM1606316 SRA237121 SRX870979 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 50 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795677 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795677 GSM1606317 SRA237121 SRX870980 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 51 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795678 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795678 GSM1606318 SRA237121 SRX870981 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 52 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795679 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795679 GSM1606319 SRA237121 SRX870982 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 53 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795680 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795680 GSM1606320 SRA237121 SRX870983 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 54 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795681 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795681 GSM1606321 SRA237121 SRX870984 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 55 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795682 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795682 GSM1606322 SRA237121 SRX870985 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 56 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795683 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795683 GSM1606323 SRA237121 SRX870986 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 57 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795684 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795684 GSM1606324 SRA237121 SRX870987 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 58 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795685 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795685 GSM1606325 SRA237121 SRX870988 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 59 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795686 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795686 GSM1606326 SRA237121 SRX870989 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 60 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795687 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795687 GSM1606327 SRA237121 SRX870990 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 61 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795688 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795688 GSM1606328 SRA237121 SRX870991 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 62 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795689 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795689 GSM1606329 SRA237121 SRX870992 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 63 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795690 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795690 GSM1606330 SRA237121 SRX870993 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 64 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795691 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795691 GSM1606331 SRA237121 SRX870994 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 65 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795692 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795692 GSM1606332 SRA237121 SRX870995 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 66 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795693 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795693 GSM1606333 SRA237121 SRX870996 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 67 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795694 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795694 GSM1606334 SRA237121 SRX870997 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 68 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795695 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795695 GSM1606335 SRA237121 SRX870998 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 69 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795696 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795696 GSM1606336 SRA237121 SRX870999 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 70 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795697 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795697 GSM1606337 SRA237121 SRX871000 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 71 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795698 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795698 GSM1606338 SRA237121 SRX871001 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 72 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR2972862 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002903/SRR2972862 GSM1606339 SRA237121 SRX871002 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 73 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR2972863 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002903/SRR2972863 GSM1606340 SRA237121 SRX871003 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 74 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795701 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795701 GSM1606341 SRA237121 SRX871004 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 75 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795702 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795702 GSM1606342 SRA237121 SRX871005 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 76 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795703 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795703 GSM1606343 SRA237121 SRX871006 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 77 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795704 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795704 GSM1606344 SRA237121 SRX871007 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 78 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795705 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795705 GSM1606345 SRA237121 SRX871008 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 79 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795706 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795706 GSM1606346 SRA237121 SRX871009 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 80 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795707 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795707 GSM1606347 SRA237121 SRX871010 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 81 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795708 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795708 GSM1606348 SRA237121 SRX871011 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 82 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795709 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795709 GSM1606349 SRA237121 SRX871012 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 83 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795710 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795710 GSM1606350 SRA237121 SRX871013 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 84 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795711 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795711 GSM1606351 SRA237121 SRX871014 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 85 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795712 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795712 GSM1606352 SRA237121 SRX871015 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 86 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795713 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795713 GSM1606353 SRA237121 SRX871016 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 87 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR2972864 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002903/SRR2972864 GSM1606354 SRA237121 SRX871017 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 88 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR2972865 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002903/SRR2972865 GSM1606355 SRA237121 SRX871018 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 89 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795716 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795716 GSM1606356 SRA237121 SRX871019 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 90 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795717 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795717 GSM1606357 SRA237121 SRX871020 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 91 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795718 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795718 GSM1606358 SRA237121 SRX871021 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 92 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795719 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795719 GSM1606359 SRA237121 SRX871022 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 93 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795720 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795720 GSM1606360 SRA237121 SRX871023 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 94 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795721 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795721 GSM1606361 SRA237121 SRX871024 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 95 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795722 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795722 GSM1606362 SRA237121 SRX871025 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 96 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795723 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795723 GSM1606363 SRA237121 SRX871026 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 97 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795724 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795724 GSM1606364 SRA237121 SRX871027 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 98 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795725 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795725 GSM1606365 SRA237121 SRX871028 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 99 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795726 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795726 GSM1606366 SRA237121 SRX871029 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 100 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795727 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795727 GSM1606367 SRA237121 SRX871030 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 101 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795535 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795535 GSM1606175 SRA237121 SRX870838 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 102 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795536 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795536 GSM1606176 SRA237121 SRX870839 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 103 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795537 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795537 GSM1606177 SRA237121 SRX870840 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 104 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795538 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795538 GSM1606178 SRA237121 SRX870841 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 105 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795539 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795539 GSM1606179 SRA237121 SRX870842 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 106 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795540 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795540 GSM1606180 SRA237121 SRX870843 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 107 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795541 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795541 GSM1606181 SRA237121 SRX870844 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 108 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795542 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795542 GSM1606182 SRA237121 SRX870845 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 109 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795543 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795543 GSM1606183 SRA237121 SRX870846 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 110 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795544 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795544 GSM1606184 SRA237121 SRX870847 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 111 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795545 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795545 GSM1606185 SRA237121 SRX870848 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 112 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795546 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795546 GSM1606186 SRA237121 SRX870849 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 113 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795547 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795547 GSM1606187 SRA237121 SRX870850 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 114 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795548 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795548 GSM1606188 SRA237121 SRX870851 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 115 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795549 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795549 GSM1606189 SRA237121 SRX870852 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 116 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795550 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795550 GSM1606190 SRA237121 SRX870853 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 117 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795551 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795551 GSM1606191 SRA237121 SRX870854 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 118 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795552 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795552 GSM1606192 SRA237121 SRX870855 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 119 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795553 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795553 GSM1606193 SRA237121 SRX870856 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 120 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795554 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795554 GSM1606194 SRA237121 SRX870857 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 121 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795555 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795555 GSM1606195 SRA237121 SRX870858 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 122 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795556 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795556 GSM1606196 SRA237121 SRX870859 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 123 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795557 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795557 GSM1606197 SRA237121 SRX870860 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 124 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795558 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795558 GSM1606198 SRA237121 SRX870861 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 125 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795559 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795559 GSM1606199 SRA237121 SRX870862 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 126 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795560 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795560 GSM1606200 SRA237121 SRX870863 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 127 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795561 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795561 GSM1606201 SRA237121 SRX870864 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 128 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795562 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795562 GSM1606202 SRA237121 SRX870865 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 129 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795563 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795563 GSM1606203 SRA237121 SRX870866 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 130 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795564 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795564 GSM1606204 SRA237121 SRX870867 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 131 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795565 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795565 GSM1606205 SRA237121 SRX870868 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 132 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795566 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795566 GSM1606206 SRA237121 SRX870869 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 133 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795567 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795567 GSM1606207 SRA237121 SRX870870 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 134 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795568 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795568 GSM1606208 SRA237121 SRX870871 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 135 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795569 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795569 GSM1606209 SRA237121 SRX870872 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 136 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795570 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795570 GSM1606210 SRA237121 SRX870873 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 137 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795571 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795571 GSM1606211 SRA237121 SRX870874 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 138 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795572 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795572 GSM1606212 SRA237121 SRX870875 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 139 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795573 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795573 GSM1606213 SRA237121 SRX870876 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 140 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795574 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795574 GSM1606214 SRA237121 SRX870877 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 141 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795575 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795575 GSM1606215 SRA237121 SRX870878 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 142 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795576 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795576 GSM1606216 SRA237121 SRX870879 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 143 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795577 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795577 GSM1606217 SRA237121 SRX870880 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 144 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795578 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795578 GSM1606218 SRA237121 SRX870881 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 145 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795579 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795579 GSM1606219 SRA237121 SRX870882 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 146 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795580 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795580 GSM1606220 SRA237121 SRX870883 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 147 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795581 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795581 GSM1606221 SRA237121 SRX870884 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 148 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795582 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795582 GSM1606222 SRA237121 SRX870885 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 149 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795583 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795583 GSM1606223 SRA237121 SRX870886 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 150 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795584 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795584 GSM1606224 SRA237121 SRX870887 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 151 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795585 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795585 GSM1606225 SRA237121 SRX870888 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 152 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795586 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795586 GSM1606226 SRA237121 SRX870889 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 153 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795587 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795587 GSM1606227 SRA237121 SRX870890 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 154 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795588 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795588 GSM1606228 SRA237121 SRX870891 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 155 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795589 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795589 GSM1606229 SRA237121 SRX870892 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 156 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795590 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795590 GSM1606230 SRA237121 SRX870893 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 157 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795591 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795591 GSM1606231 SRA237121 SRX870894 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 158 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795592 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795592 GSM1606232 SRA237121 SRX870895 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 159 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795593 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795593 GSM1606233 SRA237121 SRX870896 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 160 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795594 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795594 GSM1606234 SRA237121 SRX870897 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 161 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795595 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795595 GSM1606235 SRA237121 SRX870898 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 162 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795596 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795596 GSM1606236 SRA237121 SRX870899 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 163 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795597 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795597 GSM1606237 SRA237121 SRX870900 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 164 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795598 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795598 GSM1606238 SRA237121 SRX870901 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 165 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795599 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795599 GSM1606239 SRA237121 SRX870902 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 166 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795600 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795600 GSM1606240 SRA237121 SRX870903 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 167 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795601 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795601 GSM1606241 SRA237121 SRX870904 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 168 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795602 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795602 GSM1606242 SRA237121 SRX870905 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 169 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795603 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795603 GSM1606243 SRA237121 SRX870906 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 170 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795604 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795604 GSM1606244 SRA237121 SRX870907 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 171 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795605 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795605 GSM1606245 SRA237121 SRX870908 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 172 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795606 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795606 GSM1606246 SRA237121 SRX870909 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 173 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795607 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795607 GSM1606247 SRA237121 SRX870910 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 174 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795608 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795608 GSM1606248 SRA237121 SRX870911 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 175 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795609 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795609 GSM1606249 SRA237121 SRX870912 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 176 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795610 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795610 GSM1606250 SRA237121 SRX870913 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 177 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795611 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795611 GSM1606251 SRA237121 SRX870914 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 178 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795612 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795612 GSM1606252 SRA237121 SRX870915 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 179 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795613 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795613 GSM1606253 SRA237121 SRX870916 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 180 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795614 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795614 GSM1606254 SRA237121 SRX870917 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 181 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795615 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795615 GSM1606255 SRA237121 SRX870918 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 182 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795616 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795616 GSM1606256 SRA237121 SRX870919 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 183 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795617 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795617 GSM1606257 SRA237121 SRX870920 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 184 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795618 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795618 GSM1606258 SRA237121 SRX870921 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 185 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795619 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795619 GSM1606259 SRA237121 SRX870922 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 186 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795620 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795620 GSM1606260 SRA237121 SRX870923 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 187 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795621 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795621 GSM1606261 SRA237121 SRX870924 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 188 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795622 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795622 GSM1606262 SRA237121 SRX870925 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 189 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795623 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795623 GSM1606263 SRA237121 SRX870926 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 190 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795624 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795624 GSM1606264 SRA237121 SRX870927 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 191 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795625 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795625 GSM1606265 SRA237121 SRX870928 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 192 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795626 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795626 GSM1606266 SRA237121 SRX870929 RNA-Seq PAIRED SRP053406 PRJNA275011 65785 193 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 SRR1795627 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/001753/SRR1795627 GSM1606267 SRA237121 SRX870930 RNA-Seq PAIRED SRP053406 PRJNA275011 67974 1 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980165 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980165 GSM1659896 SRA259887 SRX999324 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 2 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980166 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980166 GSM1659897 SRA259887 SRX999325 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 3 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980167 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980167 GSM1659898 SRA259887 SRX999326 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 4 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980168 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980168 GSM1659899 SRA259887 SRX999327 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 5 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980169 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980169 GSM1659900 SRA259887 SRX999328 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 6 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980170 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980170 GSM1659901 SRA259887 SRX999329 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 7 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980171 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980171 GSM1659902 SRA259887 SRX999330 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 8 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980172 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980172 GSM1659903 SRA259887 SRX999331 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 9 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980173 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980173 GSM1659904 SRA259887 SRX999332 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 10 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980174 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980174 GSM1659905 SRA259887 SRX999333 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 11 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980175 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001933/SRR1980175 GSM1659906 SRA259887 SRX999334 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 12 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980176 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001933/SRR1980176 GSM1659907 SRA259887 SRX999335 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 13 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980177 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/001933/SRR1980177 GSM1659908 SRA259887 SRX999336 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 14 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980178 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980178 GSM1659909 SRA259887 SRX999337 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 15 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980179 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980179 GSM1659910 SRA259887 SRX999338 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 16 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980180 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980180 GSM1659911 SRA259887 SRX999339 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 17 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980181 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980181 GSM1659912 SRA259887 SRX999340 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 18 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980182 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980182 GSM1659913 SRA259887 SRX999341 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 19 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980183 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980183 GSM1659914 SRA259887 SRX999342 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 20 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980184 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980184 GSM1659915 SRA259887 SRX999343 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 21 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980185 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980185 GSM1659916 SRA259887 SRX999344 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 22 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980186 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980186 GSM1659917 SRA259887 SRX999345 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 23 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980187 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980187 GSM1659918 SRA259887 SRX999346 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 24 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980188 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980188 GSM1659919 SRA259887 SRX999347 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 25 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980189 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980189 GSM1659920 SRA259887 SRX999348 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 26 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980190 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980190 GSM1659921 SRA259887 SRX999349 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 27 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980191 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980191 GSM1659922 SRA259887 SRX999350 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 28 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980192 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980192 GSM1659923 SRA259887 SRX999351 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 29 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980193 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980193 GSM1659924 SRA259887 SRX999352 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 30 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980194 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980194 GSM1659925 SRA259887 SRX999353 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 31 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980195 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980195 GSM1659926 SRA259887 SRX999354 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 32 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980196 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980196 GSM1659927 SRA259887 SRX999355 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 33 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980197 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980197 GSM1659928 SRA259887 SRX999356 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 34 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980198 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980198 GSM1659929 SRA259887 SRX999357 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 35 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980199 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980199 GSM1659930 SRA259887 SRX999358 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 36 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980200 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980200 GSM1659931 SRA259887 SRX999359 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 37 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980201 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980201 GSM1659932 SRA259887 SRX999360 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 38 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980202 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980202 GSM1659933 SRA259887 SRX999361 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 39 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980203 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980203 GSM1659934 SRA259887 SRX999362 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 40 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980204 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980204 GSM1659935 SRA259887 SRX999363 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 41 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980205 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980205 GSM1659936 SRA259887 SRX999364 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 42 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980206 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980206 GSM1659937 SRA259887 SRX999365 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 43 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980207 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980207 GSM1659938 SRA259887 SRX999366 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 44 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980208 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980208 GSM1659939 SRA259887 SRX999367 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 45 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980209 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980209 GSM1659940 SRA259887 SRX999368 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 46 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980210 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980210 GSM1659941 SRA259887 SRX999369 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 47 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980211 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980211 GSM1659942 SRA259887 SRX999370 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 48 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980212 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980212 GSM1659943 SRA259887 SRX999371 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 49 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980213 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980213 GSM1659944 SRA259887 SRX999372 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 50 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980214 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980214 GSM1659945 SRA259887 SRX999373 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 51 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980215 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980215 GSM1659946 SRA259887 SRX999374 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 52 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980216 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980216 GSM1659947 SRA259887 SRX999375 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 53 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980217 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980217 GSM1659948 SRA259887 SRX999376 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 54 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980218 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980218 GSM1659949 SRA259887 SRX999377 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 55 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980219 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980219 GSM1659950 SRA259887 SRX999378 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 56 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980220 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980220 GSM1659951 SRA259887 SRX999379 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 57 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980221 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980221 GSM1659952 SRA259887 SRX999380 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 58 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980222 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980222 GSM1659953 SRA259887 SRX999381 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 59 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980223 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980223 GSM1659954 SRA259887 SRX999382 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 60 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR1980224 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001933/SRR1980224 GSM1659955 SRA259887 SRX999383 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 61 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2011510 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001964/SRR2011510 GSM1677167 SRA259887 SRX1020033 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 62 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353007 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353007 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 63 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353008 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353008 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 64 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353009 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353009 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 65 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353010 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353010 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 66 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353011 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353011 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 67 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353012 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353012 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 68 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353013 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353013 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 69 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353014 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353014 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 70 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353015 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353015 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 71 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353016 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353016 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 72 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353017 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353017 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 73 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353018 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353018 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 74 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR2353019 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002297/SRR2353019 GSM1875285 SRA259887 SRX1225083 Bisulfite-Seq SINGLE SRP057395 PRJNA281501 67974 75 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027514 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002956/SRR3027514 GSM1974223 SRA259887 SRX1488584 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 76 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027515 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002956/SRR3027515 GSM1974224 SRA259887 SRX1488585 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 77 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027516 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002956/SRR3027516 GSM1974225 SRA259887 SRX1488586 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 78 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027517 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002956/SRR3027517 GSM1974226 SRA259887 SRX1488587 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 79 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027518 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002956/SRR3027518 GSM1974227 SRA259887 SRX1488588 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 80 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027519 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002956/SRR3027519 GSM1974228 SRA259887 SRX1488589 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 81 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027520 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002956/SRR3027520 GSM1974229 SRA259887 SRX1488590 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 82 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027521 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002956/SRR3027521 GSM1974230 SRA259887 SRX1488591 ChIP-Seq SINGLE SRP057395 PRJNA281501 67974 83 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027522 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002956/SRR3027522 GSM1974231 SRA259887 SRX1488592 RNA-Seq SINGLE SRP057395 PRJNA281501 67974 84 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA 26679111 51677 SRP057395 SRR3027523 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002956/SRR3027523 GSM1974232 SRA259887 SRX1488593 RNA-Seq SINGLE SRP057395 PRJNA281501 68087 1 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983665 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983665 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 2 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983666 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983666 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 3 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983667 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983667 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 4 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983668 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983668 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 5 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983669 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983669 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 6 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983670 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983670 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 7 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983671 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983671 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 8 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983672 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983672 GSM1662779 SRA260956 SRX1002590 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 9 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983673 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983673 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 10 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983674 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983674 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 11 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983675 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983675 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 12 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983676 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983676 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 13 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983677 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983677 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 14 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983678 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983678 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 15 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983679 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983679 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 16 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983680 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983680 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 17 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983681 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983681 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 18 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983682 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983682 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 19 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983683 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983683 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 20 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983684 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983684 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 21 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983685 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983685 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 22 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983686 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983686 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 23 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983687 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983687 GSM1662780 SRA260956 SRX1002591 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 24 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983688 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983688 GSM1662781 SRA260956 SRX1002592 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 25 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983689 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983689 GSM1662781 SRA260956 SRX1002592 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 26 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983690 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983690 GSM1662781 SRA260956 SRX1002592 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 27 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983691 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983691 GSM1662781 SRA260956 SRX1002592 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 28 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983692 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983692 GSM1662781 SRA260956 SRX1002592 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 29 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983693 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983693 GSM1662781 SRA260956 SRX1002592 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 30 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983694 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983694 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 31 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983695 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983695 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 32 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983696 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983696 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 33 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983697 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983697 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 34 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983698 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983698 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 35 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983699 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983699 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 36 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983700 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983700 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 37 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983701 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983701 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 38 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983702 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983702 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 39 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983703 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983703 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 40 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983704 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983704 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 41 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983705 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983705 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 42 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983706 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983706 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 43 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983707 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983707 GSM1662782 SRA260956 SRX1002593 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 44 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983708 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983708 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 45 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983709 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983709 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 46 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983710 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983710 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 47 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983711 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983711 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 48 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983712 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983712 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 49 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983713 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983713 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 50 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983714 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983714 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 51 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983715 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983715 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 52 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983716 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983716 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 53 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983717 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983717 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 54 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983718 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983718 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 55 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983719 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983719 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 56 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983720 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983720 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 57 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983721 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983721 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 58 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983722 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983722 GSM1662783 SRA260956 SRX1002594 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 59 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983723 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983723 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 60 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983724 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983724 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 61 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983725 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983725 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 62 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983726 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983726 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 63 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983727 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983727 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 64 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983728 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983728 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 65 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983729 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983729 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 66 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983730 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983730 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 67 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983731 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983731 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 68 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983732 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983732 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 69 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983733 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983733 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 70 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983734 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983734 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 71 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983735 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983735 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 72 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983736 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983736 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 73 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983737 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983737 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 74 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983738 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983738 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 75 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983739 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983739 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 76 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983740 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983740 GSM1662784 SRA260956 SRX1002595 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 77 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983741 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983741 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 78 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983742 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983742 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 79 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983743 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983743 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 80 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983744 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983744 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 81 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983745 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983745 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 82 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983746 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983746 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 83 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983747 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983747 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 84 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983748 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983748 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 85 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983749 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983749 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 86 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983750 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983750 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 87 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983751 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983751 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 88 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983752 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983752 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 89 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983753 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983753 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 90 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983754 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983754 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 91 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983755 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983755 GSM1662785 SRA260956 SRX1002596 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 92 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983756 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983756 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 93 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983757 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983757 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 94 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983758 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983758 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 95 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983759 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983759 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 96 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983760 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983760 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 97 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983761 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983761 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 98 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983762 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983762 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 99 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983763 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983763 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 100 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983764 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983764 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 101 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983765 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983765 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 102 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983766 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983766 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 103 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983767 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983767 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 104 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983768 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983768 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 105 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983769 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983769 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 106 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983770 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983770 GSM1662786 SRA260956 SRX1002597 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 107 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983771 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983771 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 108 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983772 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983772 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 109 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983773 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983773 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 110 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983774 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983774 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 111 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983775 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983775 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 112 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983776 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983776 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 113 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983777 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983777 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 114 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983778 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983778 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 115 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983779 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983779 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 116 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983780 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983780 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 117 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983781 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983781 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 118 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983782 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983782 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 119 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983783 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983783 GSM1662787 SRA260956 SRX1002598 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 120 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983784 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983784 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 121 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983785 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983785 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 122 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983786 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983786 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 123 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983787 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983787 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 124 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983788 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983788 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 125 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983789 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983789 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 126 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983790 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983790 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 127 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983791 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983791 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 128 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983792 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983792 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 129 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983793 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983793 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 130 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983794 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983794 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 131 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983795 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983795 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 132 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983796 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983796 GSM1662788 SRA260956 SRX1002599 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 133 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983797 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983797 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 134 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983798 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983798 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 135 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983799 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983799 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 136 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983800 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983800 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 137 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983801 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983801 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 138 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983802 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983802 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 139 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983803 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983803 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 140 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983804 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983804 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 141 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983805 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983805 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 142 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983806 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983806 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 143 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983807 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983807 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 144 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983808 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983808 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 145 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983809 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983809 GSM1662789 SRA260956 SRX1002600 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 146 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983810 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983810 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 147 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983811 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983811 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 148 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983812 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983812 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 149 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983813 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983813 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 150 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983814 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983814 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 151 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983815 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983815 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 152 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983816 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983816 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 153 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983817 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983817 GSM1662790 SRA260956 SRX1002601 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 154 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983818 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983818 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 155 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983819 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983819 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 156 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983820 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983820 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 157 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983821 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983821 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 158 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983822 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983822 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 159 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983823 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983823 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 160 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983824 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983824 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 161 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983825 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983825 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 162 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983826 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983826 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 163 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983827 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983827 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 164 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983828 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983828 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 165 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983829 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983829 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 166 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983830 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983830 GSM1662791 SRA260956 SRX1002602 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 167 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983831 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983831 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 168 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983832 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983832 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 169 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983833 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983833 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 170 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983834 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983834 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 171 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983835 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983835 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 172 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983836 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983836 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 173 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983837 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983837 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 174 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR1983838 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001937/SRR1983838 GSM1662792 SRA260956 SRX1002603 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 175 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179966 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179966 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 176 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179967 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179967 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 177 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179968 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179968 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 178 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179969 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179969 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 179 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179970 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179970 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 180 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179971 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179971 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 181 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179972 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179972 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 182 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179973 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179973 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 183 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179974 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179974 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 184 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179975 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179975 GSM1859497 SRA260956 SRX1162703 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 185 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179976 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179976 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 186 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179977 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179977 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 187 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179978 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179978 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 188 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179979 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179979 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 189 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179980 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179980 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 190 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179981 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179981 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 191 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179982 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179982 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 192 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179983 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179983 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 193 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179984 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179984 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 194 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179985 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179985 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 195 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179986 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179986 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 196 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179987 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179987 GSM1859498 SRA260956 SRX1162704 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 197 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179988 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179988 GSM1859499 SRA260956 SRX1162705 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 198 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179989 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179989 GSM1859499 SRA260956 SRX1162705 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 199 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179990 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179990 GSM1859499 SRA260956 SRX1162705 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 200 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179991 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179991 GSM1859499 SRA260956 SRX1162705 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 201 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179992 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179992 GSM1859499 SRA260956 SRX1162705 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 202 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179993 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179993 GSM1859499 SRA260956 SRX1162705 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 203 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179994 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179994 GSM1859499 SRA260956 SRX1162705 Bisulfite-Seq SINGLE SRP057505 PRJNA281741 68087 204 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179995 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179995 GSM1859500 SRA260956 SRX1162706 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 205 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179996 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179996 GSM1859501 SRA260956 SRX1162707 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 206 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179997 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179997 GSM1859502 SRA260956 SRX1162708 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 207 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179998 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179998 GSM1859503 SRA260956 SRX1162709 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 208 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2179999 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2179999 GSM1859504 SRA260956 SRX1162710 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 209 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180000 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180000 GSM1859505 SRA260956 SRX1162711 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 210 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180001 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180001 GSM1859506 SRA260956 SRX1162712 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 211 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180002 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180002 GSM1859507 SRA260956 SRX1162713 RNA-Seq SINGLE SRP057505 PRJNA281741 68087 212 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180003 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180003 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 213 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180004 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180004 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 214 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180005 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180005 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 215 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180006 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180006 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 216 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180007 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180007 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 217 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180008 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180008 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 218 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180009 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180009 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 219 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180010 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180010 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 220 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180011 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180011 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 221 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180012 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180012 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 222 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180013 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180013 GSM1859508 SRA260956 SRX1162714 OTHER SINGLE SRP057505 PRJNA281741 68087 223 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180014 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180014 GSM1859509 SRA260956 SRX1162715 OTHER PAIRED SRP057505 PRJNA281741 68087 224 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180015 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180015 GSM1859510 SRA260956 SRX1162716 OTHER PAIRED SRP057505 PRJNA281741 68087 225 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180016 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180016 GSM1859511 SRA260956 SRX1162717 OTHER PAIRED SRP057505 PRJNA281741 68087 226 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos 26928226 51922 SRP057505 SRR2180017 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002128/SRR2180017 GSM1859512 SRA260956 SRX1162718 OTHER PAIRED SRP057505 PRJNA281741 68972 1 Xiaopeng Ma The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu RNAseq of animal and vegetal blastomeres with 2 biological replicates 26013826 50741 SRP058428 SRR2029779 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/001982/SRR2029779 GSM1689109 SRA268729 SRX1030262 RNA-Seq PAIRED SRP058428 PRJNA284242 68972 2 Xiaopeng Ma The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu RNAseq of animal and vegetal blastomeres with 2 biological replicates 26013826 50741 SRP058428 SRR2029780 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/001982/SRR2029780 GSM1689110 SRA268729 SRX1030263 RNA-Seq PAIRED SRP058428 PRJNA284242 68972 3 Xiaopeng Ma The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu RNAseq of animal and vegetal blastomeres with 2 biological replicates 26013826 50741 SRP058428 SRR2029781 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001982/SRR2029781 GSM1689111 SRA268729 SRX1030264 RNA-Seq PAIRED SRP058428 PRJNA284242 68972 4 Xiaopeng Ma The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu RNAseq of animal and vegetal blastomeres with 2 biological replicates 26013826 50741 SRP058428 SRR2029782 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/001982/SRR2029782 GSM1689112 SRA268729 SRX1030265 RNA-Seq PAIRED SRP058428 PRJNA284242 69701 1 Daniel Ramire-Gordillo RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance Purpose: To identify orthologous genes in Xenopus that are implicated in deafness and vestibular disorders in humans and to compare RNA-Seq and microa Daniel Ramire-Gordillo, Daniel Ramirez-Gordillo, TuShun Powers, Casilda Trujillo-Provencio, Jennifer van Velkinburgh, Faye Schilkey, Elba Serrano Inner ear RNA from X. laevis larval stages 56-58 was isolated and shipped to the National Center for Genome Resources, for Illumina-Solexa sequencing or to the Massachusetts Institute of Technology BioMicro Center for microarray analysis with the Affymetrix GeneChip® X. laevis Genome 2.0 Array. RNA-Sequencing was completed using the Illumina-Solexa platform for sequencing by synthesis. Short-insert paired end (SIPE) libraries were prepared from total RNA according to Illumina’s mRNA-Seq Sample Prep Protocol v2.0 (Illumina, San Diego, CA, USA). The resultant double-stranded cDNA concentration was measured on a NanoDrop spectrophotometer, and size and purity were determined on the 2100 Bioanalyzer using a DNA 1000 Nano kit. The cDNA libraries were cluster amplified on Illumina flowcells, sequenced on the GAII Sequencer as 36-cycle single-end reads, and processed using Illumina software v1.0. Illumina reads were aligned to the X. tropicalis genome using the algorithm for genomic mapping and alignment program (GMAP) and Alpheus® Sequence Variant Detection System v3.1. 26582541 51592 SRP059283 SRR2057655 https://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRR/002009/SRR2057655 GSM1707665 SRA272228 SRX1054490 RNA-Seq SINGLE SRP059283 PRJNA286217 71006 1 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105075 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105075 GSM1825040 SRA278301 SRX1099252 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 2 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105076 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105076 GSM1825041 SRA278301 SRX1099254 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 3 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105077 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105077 GSM1825042 SRA278301 SRX1099255 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 4 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105078 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105078 GSM1825043 SRA278301 SRX1099256 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 5 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105079 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105079 GSM1825044 SRA278301 SRX1099257 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 6 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105080 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105080 GSM1825045 SRA278301 SRX1099258 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 7 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105081 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105081 GSM1825046 SRA278301 SRX1099259 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 8 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105082 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105082 GSM1825047 SRA278301 SRX1099260 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 9 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105083 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105083 GSM1825048 SRA278301 SRX1099261 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 10 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105084 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105084 GSM1825049 SRA278301 SRX1099262 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 11 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105085 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105085 GSM1825050 SRA278301 SRX1099263 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 12 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105086 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105086 GSM1825051 SRA278301 SRX1099264 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 13 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105087 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105087 GSM1825052 SRA278301 SRX1099265 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 14 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105088 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105088 GSM1825053 SRA278301 SRX1099266 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 15 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105089 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105089 GSM1825054 SRA278301 SRX1099267 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 16 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105090 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105090 GSM1825055 SRA278301 SRX1099268 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 17 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105091 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105091 GSM1825056 SRA278301 SRX1099269 RNA-Seq PAIRED SRP061238 PRJNA290093 71006 18 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates. 26231746 51076 SRP061238 SRR2105092 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/002055/SRR2105092 GSM1825057 SRA278301 SRX1099270 RNA-Seq PAIRED SRP061238 PRJNA290093 72657 1 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230067 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230067 GSM1867400 SRA293747 SRX1178590 ChIP-Seq SINGLE SRP063109 PRJNA294599 72657 2 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230068 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230068 GSM1867401 SRA293747 SRX1178591 ChIP-Seq SINGLE SRP063109 PRJNA294599 72657 3 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230069 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230069 GSM1867402 SRA293747 SRX1178592 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 4 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230070 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230070 GSM1867403 SRA293747 SRX1178593 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 5 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230071 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230071 GSM1867404 SRA293747 SRX1178594 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 6 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230072 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230072 GSM1867405 SRA293747 SRX1178595 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 7 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230073 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230073 GSM1867406 SRA293747 SRX1178596 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 8 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230074 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230074 GSM1867407 SRA293747 SRX1178597 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 9 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230075 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230075 GSM1867408 SRA293747 SRX1178598 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 10 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230076 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230076 GSM1867409 SRA293747 SRX1178599 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 11 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230077 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230077 GSM1867410 SRA293747 SRX1178600 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 12 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230078 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230078 GSM1867411 SRA293747 SRX1178601 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 13 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230079 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230079 GSM1867412 SRA293747 SRX1178602 RNA-Seq PAIRED SRP063109 PRJNA294599 72657 14 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced. 27068107 52077 SRP063109 SRR2230080 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/002177/SRR2230080 GSM1867413 SRA293747 SRX1178603 RNA-Seq PAIRED SRP063109 PRJNA294599 73419 1 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515135 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515135 GSM1893239 SRA300938 SRX1286458 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 2 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515136 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515136 GSM1893240 SRA300938 SRX1286459 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 3 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515137 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515137 GSM1893241 SRA300938 SRX1286460 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 4 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515138 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515138 GSM1893242 SRA300938 SRX1286461 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 5 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515139 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515139 GSM1893243 SRA300938 SRX1286462 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 6 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515140 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515140 GSM1893244 SRA300938 SRX1286463 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 7 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515141 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515141 GSM1893245 SRA300938 SRX1286464 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 8 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515142 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515142 GSM1893246 SRA300938 SRX1286465 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 9 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515143 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515143 GSM1893247 SRA300938 SRX1286466 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 10 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515144 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515144 GSM1893248 SRA300938 SRX1286467 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 11 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515145 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515145 GSM1893249 SRA300938 SRX1286468 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 12 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515146 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515146 GSM1893250 SRA300938 SRX1286469 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 13 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515147 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515147 GSM1893251 SRA300938 SRX1286470 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 14 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515148 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515148 GSM1893252 SRA300938 SRX1286471 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 15 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515149 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515149 GSM1893253 SRA300938 SRX1286472 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 16 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515150 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515150 GSM1893254 SRA300938 SRX1286473 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 17 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515151 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515151 GSM1893255 SRA300938 SRX1286474 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 18 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515152 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515152 GSM1893256 SRA300938 SRX1286475 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 19 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515153 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515153 GSM1893257 SRA300938 SRX1286476 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 20 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515154 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515154 GSM1893258 SRA300938 SRX1286477 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 21 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515155 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515155 GSM1893259 SRA300938 SRX1286478 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 22 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515156 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515156 GSM1893260 SRA300938 SRX1286479 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 23 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515157 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515157 GSM1893261 SRA300938 SRX1286480 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 24 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515158 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515158 GSM1893262 SRA300938 SRX1286481 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 25 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515159 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515159 GSM1893263 SRA300938 SRX1286482 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 26 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515160 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515160 GSM1893264 SRA300938 SRX1286483 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 27 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515161 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515161 GSM1893265 SRA300938 SRX1286484 RNA-Seq PAIRED SRP064167 PRJNA296921 73419 28 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors) 27762356 52612 SRP064167 SRR2515162 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002456/SRR2515162 GSM1893266 SRA300938 SRX1286485 RNA-Seq PAIRED SRP064167 PRJNA296921 73430 1 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517972 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517972 GSM1893583 SRA300995 SRX1287707 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 2 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517973 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517973 GSM1893584 SRA300995 SRX1287708 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 3 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517974 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517974 GSM1893585 SRA300995 SRX1287709 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 4 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517975 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517975 GSM1893586 SRA300995 SRX1287710 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 5 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517976 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517976 GSM1893587 SRA300995 SRX1287711 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 6 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517977 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517977 GSM1893588 SRA300995 SRX1287712 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 7 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517978 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517978 GSM1893589 SRA300995 SRX1287713 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 8 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517979 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517979 GSM1893590 SRA300995 SRX1287714 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 9 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517980 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517980 GSM1893591 SRA300995 SRX1287715 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 10 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517981 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517981 GSM1893592 SRA300995 SRX1287716 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 11 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517982 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517982 GSM1893593 SRA300995 SRX1287717 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 12 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517983 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517983 GSM1893594 SRA300995 SRX1287718 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 13 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517984 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517984 GSM1893595 SRA300995 SRX1287719 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 14 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517985 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517985 GSM1893596 SRA300995 SRX1287720 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 15 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517986 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517986 GSM1893597 SRA300995 SRX1287721 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 16 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517987 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517987 GSM1893598 SRA300995 SRX1287722 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 17 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517988 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517988 GSM1893599 SRA300995 SRX1287723 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 18 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517989 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517989 GSM1893600 SRA300995 SRX1287724 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 19 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517990 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517990 GSM1893601 SRA300995 SRX1287725 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 20 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517991 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517991 GSM1893602 SRA300995 SRX1287726 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 21 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517992 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517992 GSM1893603 SRA300995 SRX1287727 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 22 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517993 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517993 GSM1893604 SRA300995 SRX1287728 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 23 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517994 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517994 GSM1893605 SRA300995 SRX1287729 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 24 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517995 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517995 GSM1893606 SRA300995 SRX1287730 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 25 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517996 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517996 GSM1893607 SRA300995 SRX1287731 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 26 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517997 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517997 GSM1893608 SRA300995 SRX1287732 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 27 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517998 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517998 GSM1893609 SRA300995 SRX1287733 RNA-Seq PAIRED SRP064186 PRJNA296953 73430 28 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 SRR2517999 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/002458/SRR2517999 GSM1893610 SRA300995 SRX1287734 RNA-Seq PAIRED SRP064186 PRJNA296953 73870 1 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589787 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589787 GSM1904663 SRA304013 SRX1319030 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 2 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589788 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002529/SRR2589788 GSM1904664 SRA304013 SRX1319031 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 3 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589789 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589789 GSM1904665 SRA304013 SRX1319032 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 4 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589790 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589790 GSM1904666 SRA304013 SRX1319033 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 5 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589791 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589791 GSM1904667 SRA304013 SRX1319034 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 6 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589792 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002529/SRR2589792 GSM1904668 SRA304013 SRX1319035 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 7 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589793 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589793 GSM1904669 SRA304013 SRX1319036 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 8 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589794 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589794 GSM1904670 SRA304013 SRX1319037 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 9 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589795 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002529/SRR2589795 GSM1904671 SRA304013 SRX1319038 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 10 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589796 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589796 GSM1904672 SRA304013 SRX1319039 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 11 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589797 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589797 GSM1904673 SRA304013 SRX1319040 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 12 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589798 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002529/SRR2589798 GSM1904674 SRA304013 SRX1319041 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 13 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589799 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002529/SRR2589799 GSM1904675 SRA304013 SRX1319042 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 14 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589800 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589800 GSM1904676 SRA304013 SRX1319043 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 15 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589801 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002529/SRR2589801 GSM1904677 SRA304013 SRX1319044 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 16 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589802 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589802 GSM1904678 SRA304013 SRX1319045 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 17 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589803 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002529/SRR2589803 GSM1904679 SRA304013 SRX1319046 RNA-Seq PAIRED SRP064629 PRJNA298254 73870 18 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification. 26555057 51556 SRP064629 SRR2589804 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002529/SRR2589804 GSM1904680 SRA304013 SRX1319047 RNA-Seq PAIRED SRP064629 PRJNA298254 73904 1 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614099 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614099 GSM1905637 SRA304196 SRX1325663 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 2 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614100 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614100 GSM1905638 SRA304196 SRX1325665 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 3 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614101 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614101 GSM1905639 SRA304196 SRX1325666 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 4 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614102 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614102 GSM1905640 SRA304196 SRX1325667 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 5 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614103 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614103 GSM1905641 SRA304196 SRX1325668 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 6 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614104 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614104 GSM1905642 SRA304196 SRX1325669 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 7 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614105 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614105 GSM1905643 SRA304196 SRX1325670 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 8 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614106 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614106 GSM1905644 SRA304196 SRX1325671 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 9 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614107 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614107 GSM1905645 SRA304196 SRX1325672 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 10 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614108 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614108 GSM1905646 SRA304196 SRX1325673 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 11 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614109 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614109 GSM1905647 SRA304196 SRX1325674 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 12 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614110 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614110 GSM1905648 SRA304196 SRX1325675 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 13 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614111 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614111 GSM1905649 SRA304196 SRX1325676 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 14 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614112 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614112 GSM1905650 SRA304196 SRX1325677 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 15 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614113 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614113 GSM1905651 SRA304196 SRX1325678 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 16 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614114 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614114 GSM1905652 SRA304196 SRX1325679 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 17 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614115 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614115 GSM1905653 SRA304196 SRX1325680 RNA-Seq PAIRED SRP064686 PRJNA298393 73904 18 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification. 26555057 51556 SRP064686 SRR2614116 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002552/SRR2614116 GSM1905654 SRA304196 SRX1325681 RNA-Seq PAIRED SRP064686 PRJNA298393 74184 1 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732219 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732219 GSM1912879 SRA306257 SRX1356590 OTHER SINGLE SRP065025 PRJNA299278 74184 2 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732220 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732220 GSM1912880 SRA306257 SRX1356591 OTHER SINGLE SRP065025 PRJNA299278 74184 3 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732221 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732221 GSM1912881 SRA306257 SRX1356592 OTHER SINGLE SRP065025 PRJNA299278 74184 4 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732222 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732222 GSM1912882 SRA306257 SRX1356593 OTHER SINGLE SRP065025 PRJNA299278 74184 5 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732223 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732223 GSM1912883 SRA306257 SRX1356594 OTHER SINGLE SRP065025 PRJNA299278 74184 6 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732224 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732224 GSM1912884 SRA306257 SRX1356595 OTHER SINGLE SRP065025 PRJNA299278 74184 7 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732225 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732225 GSM1912885 SRA306257 SRX1356596 OTHER SINGLE SRP065025 PRJNA299278 74184 8 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732226 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732226 GSM1912886 SRA306257 SRX1356597 OTHER SINGLE SRP065025 PRJNA299278 74184 9 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732227 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732227 GSM1912887 SRA306257 SRX1356598 OTHER SINGLE SRP065025 PRJNA299278 74184 10 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732228 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/002668/SRR2732228 GSM1912888 SRA306257 SRX1356599 OTHER SINGLE SRP065025 PRJNA299278 74184 11 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732229 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732229 GSM1912889 SRA306257 SRX1356600 OTHER SINGLE SRP065025 PRJNA299278 74184 12 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732230 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732230 GSM1912890 SRA306257 SRX1356601 OTHER SINGLE SRP065025 PRJNA299278 74184 13 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732231 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732231 GSM1912891 SRA306257 SRX1356602 OTHER SINGLE SRP065025 PRJNA299278 74184 14 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732232 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732232 GSM1912892 SRA306257 SRX1356603 OTHER SINGLE SRP065025 PRJNA299278 74184 15 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732233 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/002668/SRR2732233 GSM1912893 SRA306257 SRX1356604 OTHER SINGLE SRP065025 PRJNA299278 74184 16 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732234 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732234 GSM1912894 SRA306257 SRX1356605 OTHER SINGLE SRP065025 PRJNA299278 74184 17 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732235 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732235 GSM1912895 SRA306257 SRX1356606 OTHER SINGLE SRP065025 PRJNA299278 74184 18 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732236 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732236 GSM1912896 SRA306257 SRX1356607 OTHER SINGLE SRP065025 PRJNA299278 74184 19 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732237 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732237 GSM1912897 SRA306257 SRX1356608 OTHER SINGLE SRP065025 PRJNA299278 74184 20 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732238 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732238 GSM1912898 SRA306257 SRX1356609 OTHER SINGLE SRP065025 PRJNA299278 74184 21 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732239 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/002668/SRR2732239 GSM1912899 SRA306257 SRX1356610 OTHER SINGLE SRP065025 PRJNA299278 74184 22 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732240 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/002668/SRR2732240 GSM1912900 SRA306257 SRX1356611 OTHER SINGLE SRP065025 PRJNA299278 74184 23 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732241 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732241 GSM1912901 SRA306257 SRX1356612 OTHER SINGLE SRP065025 PRJNA299278 74184 24 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732242 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732242 GSM1912902 SRA306257 SRX1356613 OTHER SINGLE SRP065025 PRJNA299278 74184 25 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732243 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732243 GSM1912903 SRA306257 SRX1356614 OTHER SINGLE SRP065025 PRJNA299278 74184 26 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732244 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732244 GSM1912904 SRA306257 SRX1356615 OTHER SINGLE SRP065025 PRJNA299278 74184 27 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732245 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732245 GSM1912905 SRA306257 SRX1356616 OTHER SINGLE SRP065025 PRJNA299278 74184 28 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 SRR2732246 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/002668/SRR2732246 GSM1912906 SRA306257 SRX1356617 OTHER SINGLE SRP065025 PRJNA299278 74470 1 Leonid Peshkin Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads. 28283406 53166 SRP065480 SRR2858152 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002791/SRR2858152 GSM1921263 SRA307973 SRX1397134 RNA-Seq PAIRED SRP065480 PRJNA300520 74470 2 Leonid Peshkin Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads. 28283406 53166 SRP065480 SRR2858153 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002791/SRR2858153 GSM1921264 SRA307973 SRX1397135 RNA-Seq PAIRED SRP065480 PRJNA300520 74470 3 Leonid Peshkin Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads. 28283406 53166 SRP065480 SRR2858154 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002791/SRR2858154 GSM1921265 SRA307973 SRX1397136 RNA-Seq PAIRED SRP065480 PRJNA300520 74919 1 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932716 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932716 GSM1937543 SRA310866 SRX1427057 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 2 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932717 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932717 GSM1937544 SRA310866 SRX1427058 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 3 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932718 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932718 GSM1937545 SRA310866 SRX1427059 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 4 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932719 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932719 GSM1937546 SRA310866 SRX1427060 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 5 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932720 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932720 GSM1937547 SRA310866 SRX1427061 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 6 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932721 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932721 GSM1937548 SRA310866 SRX1427062 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 7 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932722 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932722 GSM1937549 SRA310866 SRX1427063 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 8 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932723 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932723 GSM1937550 SRA310866 SRX1427064 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 9 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932724 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932724 GSM1937551 SRA310866 SRX1427065 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 10 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932725 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932725 GSM1937552 SRA310866 SRX1427066 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 11 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932726 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932726 GSM1937553 SRA310866 SRX1427067 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 12 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932727 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932727 GSM1937554 SRA310866 SRX1427068 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 13 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932728 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932728 GSM1937555 SRA310866 SRX1427069 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 14 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932729 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932729 GSM1937556 SRA310866 SRX1427070 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 15 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932730 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932730 GSM1937557 SRA310866 SRX1427071 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 16 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932731 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932731 GSM1937558 SRA310866 SRX1427072 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 17 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932732 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932732 GSM1937559 SRA310866 SRX1427073 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 18 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932733 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932733 GSM1937560 SRA310866 SRX1427074 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 19 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932734 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932734 GSM1937561 SRA310866 SRX1427075 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 20 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932735 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002863/SRR2932735 GSM1937562 SRA310866 SRX1427076 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 21 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932736 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002864/SRR2932736 GSM1937563 SRA310866 SRX1427077 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 22 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932737 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002864/SRR2932737 GSM1937564 SRA310866 SRX1427078 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 23 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932738 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002864/SRR2932738 GSM1937565 SRA310866 SRX1427079 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 24 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932739 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002864/SRR2932739 GSM1937566 SRA310866 SRX1427080 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 25 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932740 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002864/SRR2932740 GSM1937567 SRA310866 SRX1427081 RNA-Seq SINGLE SRP066064 PRJNA301904 74919 26 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method. Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method. Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq. Therefore, this submission involved a total of 26 libraries. 27098915 52200 SRP066064 SRR2932741 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002864/SRR2932741 GSM1937568 SRA310866 SRX1427082 RNA-Seq SINGLE SRP066064 PRJNA301904 75164 1 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924614 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924614 GSM1944406 SRA312236 SRX1437960 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 2 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924615 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924615 GSM1944407 SRA312236 SRX1437961 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 3 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924616 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924616 GSM1944408 SRA312236 SRX1437962 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 4 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924617 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924617 GSM1944409 SRA312236 SRX1437963 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 5 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924618 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924618 GSM1944410 SRA312236 SRX1437964 RNA-Seq PAIRED SRP066384 PRJNA302662 75164 6 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924619 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924619 GSM1944411 SRA312236 SRX1437965 RNA-Seq PAIRED SRP066384 PRJNA302662 75164 7 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924620 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924620 GSM1944412 SRA312236 SRX1437966 RNA-Seq PAIRED SRP066384 PRJNA302662 75164 8 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924621 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924621 GSM1944413 SRA312236 SRX1437967 RNA-Seq PAIRED SRP066384 PRJNA302662 75164 9 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924622 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924622 GSM1944414 SRA312236 SRX1437968 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 10 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924623 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924623 GSM1944415 SRA312236 SRX1437969 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 11 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924624 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924624 GSM1944416 SRA312236 SRX1437970 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 12 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924625 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924625 GSM1944417 SRA312236 SRX1437971 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 13 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924626 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924626 GSM1944418 SRA312236 SRX1437972 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 14 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924627 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924627 GSM1944419 SRA312236 SRX1437973 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 15 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924628 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924628 GSM1944420 SRA312236 SRX1437974 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 16 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924629 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924629 GSM1944421 SRA312236 SRX1437975 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 17 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924630 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924630 GSM1944422 SRA312236 SRX1437976 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 18 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924631 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924631 GSM1944423 SRA312236 SRX1437977 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 19 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924632 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924632 GSM1944424 SRA312236 SRX1437978 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 20 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924633 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924633 GSM1944425 SRA312236 SRX1437979 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 21 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924634 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924634 GSM1944426 SRA312236 SRX1437980 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 22 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924635 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924635 GSM1944427 SRA312236 SRX1437981 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 23 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924636 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924636 GSM1944428 SRA312236 SRX1437982 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 24 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924637 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924637 GSM1944429 SRA312236 SRX1437983 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 25 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924638 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924638 GSM1944430 SRA312236 SRX1437984 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 26 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924639 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924639 GSM1944431 SRA312236 SRX1437985 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 27 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924640 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924640 GSM1944432 SRA312236 SRX1437986 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 28 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924641 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924641 GSM1944433 SRA312236 SRX1437987 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 29 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924642 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924642 GSM1944434 SRA312236 SRX1437988 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 30 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924643 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924643 GSM1944435 SRA312236 SRX1437989 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 31 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924644 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924644 GSM1944436 SRA312236 SRX1437990 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 32 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924645 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924645 GSM1944437 SRA312236 SRX1437991 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 33 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924646 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924646 GSM1944438 SRA312236 SRX1437992 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 34 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924647 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924647 GSM1944439 SRA312236 SRX1437993 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 35 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924648 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924648 GSM1944440 SRA312236 SRX1437994 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 36 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924649 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924649 GSM1944441 SRA312236 SRX1437995 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 37 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924650 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924650 GSM1944442 SRA312236 SRX1437996 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 38 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924651 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924651 GSM1944443 SRA312236 SRX1437997 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 39 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924652 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924652 GSM1944444 SRA312236 SRX1437998 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 40 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924653 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924653 GSM1944445 SRA312236 SRX1437999 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 41 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924654 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924654 GSM1944446 SRA312236 SRX1438000 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 42 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924655 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924655 GSM1944447 SRA312236 SRX1438001 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 43 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924656 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924656 GSM1944448 SRA312236 SRX1438002 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 44 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924657 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924657 GSM1944449 SRA312236 SRX1438003 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 45 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924658 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924658 GSM1944450 SRA312236 SRX1438004 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 46 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924659 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924659 GSM1944451 SRA312236 SRX1438005 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 47 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924660 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924660 GSM1944452 SRA312236 SRX1438006 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 48 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924661 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924661 GSM1944453 SRA312236 SRX1438007 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 49 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924662 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924662 GSM1944454 SRA312236 SRX1438008 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 50 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924663 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924663 GSM1944455 SRA312236 SRX1438009 MNase-Seq SINGLE SRP066384 PRJNA302662 75164 51 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924664 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924664 GSM1944456 SRA312236 SRX1438010 MNase-Seq SINGLE SRP066384 PRJNA302662 75164 52 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924665 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924665 GSM1944457 SRA312236 SRX1438011 MNase-Seq SINGLE SRP066384 PRJNA302662 75164 53 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924666 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924666 GSM1944458 SRA312236 SRX1438012 MNase-Seq SINGLE SRP066384 PRJNA302662 75164 54 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924667 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924667 GSM1944459 SRA312236 SRX1438013 MNase-Seq SINGLE SRP066384 PRJNA302662 75164 55 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924668 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924668 GSM1944460 SRA312236 SRX1438014 MNase-Seq SINGLE SRP066384 PRJNA302662 75164 56 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924669 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924669 GSM1944461 SRA312236 SRX1438015 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 57 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924670 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924670 GSM1944462 SRA312236 SRX1438016 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 58 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924671 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924671 GSM1944463 SRA312236 SRX1438017 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 59 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924672 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924672 GSM1944464 SRA312236 SRX1438018 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 60 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924673 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924673 GSM1944465 SRA312236 SRX1438019 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 61 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924674 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924674 GSM1944466 SRA312236 SRX1438020 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 62 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924675 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924675 GSM1944467 SRA312236 SRX1438021 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 63 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924676 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924676 GSM1944468 SRA312236 SRX1438022 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 64 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924677 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924677 GSM1944469 SRA312236 SRX1438023 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 65 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924678 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924678 GSM1944470 SRA312236 SRX1438024 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 66 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924679 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924679 GSM1944471 SRA312236 SRX1438025 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 67 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924680 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924680 GSM1944472 SRA312236 SRX1438026 MBD-Seq SINGLE SRP066384 PRJNA302662 75164 68 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924681 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924681 GSM1944473 SRA312236 SRX1438027 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 69 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924682 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924682 GSM1944474 SRA312236 SRX1438028 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 70 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924683 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924683 GSM1944475 SRA312236 SRX1438029 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 71 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924684 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924684 GSM1944476 SRA312236 SRX1438030 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 72 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924685 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924685 GSM1944477 SRA312236 SRX1438031 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 73 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924686 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924686 GSM1944478 SRA312236 SRX1438032 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 74 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924687 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924687 GSM1944479 SRA312236 SRX1438033 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 75 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924688 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924688 GSM1944480 SRA312236 SRX1438034 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 76 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924689 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924689 GSM1944481 SRA312236 SRX1438035 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 77 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924690 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924690 GSM1944482 SRA312236 SRX1438036 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 78 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924691 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924691 GSM1944483 SRA312236 SRX1438037 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 79 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924692 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924692 GSM1944484 SRA312236 SRX1438038 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 80 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924693 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924693 GSM1944485 SRA312236 SRX1438039 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 81 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924694 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924694 GSM1944486 SRA312236 SRX1438040 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 82 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924695 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924695 GSM1944487 SRA312236 SRX1438041 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 83 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924696 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924696 GSM1944488 SRA312236 SRX1438042 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 84 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924697 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924697 GSM1944489 SRA312236 SRX1438043 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 85 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924698 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924698 GSM1944490 SRA312236 SRX1438044 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 86 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924699 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924699 GSM1944491 SRA312236 SRX1438045 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 87 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924700 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924700 GSM1944492 SRA312236 SRX1438046 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 88 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924701 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924701 GSM1944493 SRA312236 SRX1438047 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 89 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924702 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924702 GSM1944494 SRA312236 SRX1438048 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 90 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924703 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924703 GSM1944495 SRA312236 SRX1438049 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 91 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924704 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924704 GSM1944496 SRA312236 SRX1438050 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 92 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924705 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924705 GSM1944497 SRA312236 SRX1438051 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 93 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924706 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924706 GSM1944498 SRA312236 SRX1438052 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 94 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924707 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924707 GSM1944499 SRA312236 SRX1438053 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 95 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924708 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924708 GSM1944500 SRA312236 SRX1438054 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 96 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924709 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924709 GSM1944501 SRA312236 SRX1438055 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 97 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924710 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924710 GSM1944502 SRA312236 SRX1438056 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 98 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924711 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924711 GSM1944503 SRA312236 SRX1438057 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 99 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924712 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924712 GSM1944504 SRA312236 SRX1438058 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 100 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924713 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924713 GSM1944505 SRA312236 SRX1438059 ChIP-Seq SINGLE SRP066384 PRJNA302662 75164 101 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924608 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924608 GSM1944400 SRA312236 SRX1437954 RNA-Seq PAIRED SRP066384 PRJNA302662 75164 102 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924609 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924609 GSM1944401 SRA312236 SRX1437955 RNA-Seq PAIRED SRP066384 PRJNA302662 75164 103 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924610 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924610 GSM1944402 SRA312236 SRX1437956 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 104 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924611 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924611 GSM1944403 SRA312236 SRX1437957 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 105 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924612 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924612 GSM1944404 SRA312236 SRX1437958 RNA-Seq SINGLE SRP066384 PRJNA302662 75164 106 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down. 14 samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 3 replicates of single-ended RNA-seq libraries for spermatid cells. 22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b 16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b 6 samples of single-ended MNase-seq from sperm and spermatid chromatin 12 samples of MBD-seq from sperm and spermatid chromatin 27034506 53997 SRP066384 SRR2924613 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/002856/SRR2924613 GSM1944405 SRA312236 SRX1437959 RNA-Seq SINGLE SRP066384 PRJNA302662 75278 1 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 SRR2939617 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002870/SRR2939617 GSM1948717 SRA312669 SRX1441880 RNA-Seq SINGLE SRP066508 PRJNA303056 75278 2 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 SRR2939618 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002870/SRR2939618 GSM1948718 SRA312669 SRX1441881 RNA-Seq SINGLE SRP066508 PRJNA303056 75278 3 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 SRR2939619 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002870/SRR2939619 GSM1948719 SRA312669 SRX1441882 RNA-Seq SINGLE SRP066508 PRJNA303056 75278 4 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 SRR2939620 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002870/SRR2939620 GSM1948720 SRA312669 SRX1441883 RNA-Seq SINGLE SRP066508 PRJNA303056 75278 5 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 SRR2939621 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002870/SRR2939621 GSM1948721 SRA312669 SRX1441884 RNA-Seq SINGLE SRP066508 PRJNA303056 75278 6 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 SRR2939622 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002870/SRR2939622 GSM1948722 SRA312669 SRX1441885 RNA-Seq SINGLE SRP066508 PRJNA303056 75278 7 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 SRR2939623 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002870/SRR2939623 GSM1948723 SRA312669 SRX1441886 RNA-Seq SINGLE SRP066508 PRJNA303056 76059 1 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017195 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017195 GSM1973491 SRA320052 SRX1485087 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 2 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017196 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017196 GSM1973492 SRA320052 SRX1485088 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 3 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017197 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017197 GSM1973493 SRA320052 SRX1485089 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 4 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017198 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017198 GSM1973494 SRA320052 SRX1485090 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 5 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017199 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017199 GSM1973495 SRA320052 SRX1485091 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 6 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017200 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002946/SRR3017200 GSM1973496 SRA320052 SRX1485092 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 7 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017201 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017201 GSM1973497 SRA320052 SRX1485093 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 8 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017202 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017202 GSM1973498 SRA320052 SRX1485094 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 9 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017203 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002946/SRR3017203 GSM1973499 SRA320052 SRX1485095 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 10 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017204 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017204 GSM1973500 SRA320052 SRX1485096 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 11 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017205 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017205 GSM1973500 SRA320052 SRX1485096 ChIP-Seq SINGLE SRP067434 PRJNA306102 76059 12 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples. 27762356 52612 SRP067434 SRR3017206 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/002946/SRR3017206 GSM1973501 SRA320052 SRX1485097 ChIP-Seq SINGLE SRP067434 PRJNA306102 76247 1 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044220 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044220 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 2 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044221 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044221 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 3 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044222 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044222 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 4 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044223 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044223 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 5 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044224 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044224 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 6 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044225 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044225 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 7 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044226 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044226 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 8 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044227 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044227 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 9 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044228 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044228 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 10 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044229 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044229 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 11 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044230 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044230 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 12 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044231 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044231 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 13 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044232 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044232 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 14 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044233 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044233 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 15 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044234 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044234 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 16 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044235 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044235 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 17 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044236 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044236 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 18 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044237 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044237 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 19 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044238 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044238 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 20 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044239 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044239 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 21 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044240 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044240 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 22 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044241 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044241 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 23 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044242 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044242 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 24 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044243 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044243 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 25 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044244 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044244 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 26 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044245 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044245 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 27 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044246 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044246 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 28 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044247 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044247 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 29 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044248 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044248 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76247 30 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 SRR3044249 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002972/SRR3044249 GSM1977638 SRA321210 SRX1496284 Bisulfite-Seq SINGLE SRP067679 PRJNA306718 76342 1 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055524 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055524 GSM1981745 SRA322724 SRX1502297 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 2 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055525 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055525 GSM1981746 SRA322724 SRX1502298 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 3 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055526 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055526 GSM1981747 SRA322724 SRX1502299 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 4 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055527 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055527 GSM1981748 SRA322724 SRX1502300 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 5 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055528 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/002983/SRR3055528 GSM1981749 SRA322724 SRX1502301 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 6 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055529 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055529 GSM1981750 SRA322724 SRX1502302 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 7 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055530 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/002983/SRR3055530 GSM1981751 SRA322724 SRX1502303 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 8 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055531 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055531 GSM1981752 SRA322724 SRX1502304 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 9 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055532 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055532 GSM1981753 SRA322724 SRX1502305 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 10 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055533 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055533 GSM1981754 SRA322724 SRX1502306 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 11 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055534 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/002983/SRR3055534 GSM1981755 SRA322724 SRX1502307 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 12 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055535 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055535 GSM1981756 SRA322724 SRX1502308 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 13 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055536 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055536 GSM1981757 SRA322724 SRX1502309 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 14 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055537 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055537 GSM1981758 SRA322724 SRX1502310 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 15 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055538 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055538 GSM1981759 SRA322724 SRX1502311 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 16 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055539 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055539 GSM1981760 SRA322724 SRX1502312 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 17 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055540 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055540 GSM1981761 SRA322724 SRX1502313 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 18 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055541 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055541 GSM1981762 SRA322724 SRX1502314 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 19 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055542 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055542 GSM1981763 SRA322724 SRX1502315 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 20 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055543 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055543 GSM1981764 SRA322724 SRX1502316 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 21 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055544 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055544 GSM1981765 SRA322724 SRX1502317 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 22 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055545 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/002983/SRR3055545 GSM1981766 SRA322724 SRX1502318 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 23 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055546 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/002983/SRR3055546 GSM1981767 SRA322724 SRX1502319 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 24 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055547 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/002983/SRR3055547 GSM1981768 SRA322724 SRX1502320 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 25 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055548 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055548 GSM1981769 SRA322724 SRX1502321 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 26 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055549 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055549 GSM1981770 SRA322724 SRX1502322 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 27 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055550 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055550 GSM1981771 SRA322724 SRX1502323 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 28 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055551 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055551 GSM1981772 SRA322724 SRX1502324 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 29 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055552 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055552 GSM1981773 SRA322724 SRX1502325 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 30 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055553 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055553 GSM1981774 SRA322724 SRX1502326 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 31 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055554 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055554 GSM1981775 SRA322724 SRX1502327 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 32 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055555 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055555 GSM1981776 SRA322724 SRX1502328 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 33 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055556 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055556 GSM1981777 SRA322724 SRX1502329 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 34 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055557 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055557 GSM1981778 SRA322724 SRX1502330 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 35 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055558 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/002983/SRR3055558 GSM1981779 SRA322724 SRX1502331 RNA-Seq SINGLE SRP067781 PRJNA306946 76342 36 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+ RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of multiciliated cell genes. 28103240 53709 SRP067781 SRR3055559 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/002983/SRR3055559 GSM1981780 SRA322724 SRX1502332 RNA-Seq SINGLE SRP067781 PRJNA306946 76363 1 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331). 28103240 53709 SRP067835 SRR3057323 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002985/SRR3057323 GSM1982232 SRA322996 SRX1503157 OTHER PAIRED SRP067835 PRJNA307102 76363 2 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331). 28103240 53709 SRP067835 SRR3057324 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/002985/SRR3057324 GSM1982233 SRA322996 SRX1503158 OTHER PAIRED SRP067835 PRJNA307102 76363 3 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331). 28103240 53709 SRP067835 SRR3057325 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002985/SRR3057325 GSM1982234 SRA322996 SRX1503159 OTHER PAIRED SRP067835 PRJNA307102 76363 4 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331). 28103240 53709 SRP067835 SRR3057326 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/002985/SRR3057326 GSM1982235 SRA322996 SRX1503160 OTHER PAIRED SRP067835 PRJNA307102 76915 1 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 SRR3103472 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003030/SRR3103472 GSM2040681 SRA335063 SRX1532122 RNA-Seq PAIRED SRP068506 PRJNA308931 76915 2 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 SRR3103473 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003030/SRR3103473 GSM2040682 SRA335063 SRX1532123 RNA-Seq PAIRED SRP068506 PRJNA308931 76915 3 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 SRR3103474 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003030/SRR3103474 GSM2040683 SRA335063 SRX1532124 RNA-Seq PAIRED SRP068506 PRJNA308931 76915 4 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 SRR3103475 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003030/SRR3103475 GSM2040684 SRA335063 SRX1532125 RNA-Seq PAIRED SRP068506 PRJNA308931 76915 5 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 SRR3103476 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003030/SRR3103476 GSM2040685 SRA335063 SRX1532126 RNA-Seq PAIRED SRP068506 PRJNA308931 76915 6 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 SRR3103477 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003030/SRR3103477 GSM2040686 SRA335063 SRX1532127 RNA-Seq PAIRED SRP068506 PRJNA308931 76991 1 Gert Veenstra Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068637 SRR3109284 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003036/SRR3109284 GSM2042204 SRA336546 SRX1537590 RNA-Seq SINGLE SRP068637 PRJNA309195 76991 2 Gert Veenstra Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068637 SRR3109285 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003036/SRR3109285 GSM2042205 SRA336546 SRX1537591 RNA-Seq SINGLE SRP068637 PRJNA309195 76991 3 Gert Veenstra Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068637 SRR3109286 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003036/SRR3109286 GSM2042206 SRA336546 SRX1537592 RNA-Seq SINGLE SRP068637 PRJNA309195 76991 4 Gert Veenstra Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068637 SRR3109287 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003036/SRR3109287 GSM2042207 SRA336546 SRX1537593 RNA-Seq SINGLE SRP068637 PRJNA309195 76994 1 Gert Veenstra Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068680 SRR3107014 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003034/SRR3107014 GSM2042215 SRA335990 SRX1535321 RNA-Seq SINGLE SRP068680 PRJNA309218 76994 2 Gert Veenstra Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068680 SRR3107015 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003034/SRR3107015 GSM2042216 SRA335990 SRX1535322 RNA-Seq SINGLE SRP068680 PRJNA309218 76994 3 Gert Veenstra Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068680 SRR3107016 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003034/SRR3107016 GSM2042217 SRA335990 SRX1535323 RNA-Seq SINGLE SRP068680 PRJNA309218 76994 4 Gert Veenstra Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068680 SRR3107017 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003034/SRR3107017 GSM2042218 SRA335990 SRX1535324 RNA-Seq SINGLE SRP068680 PRJNA309218 77281 1 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126253 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126253/SRR3126253.1 GSM2047228 SRA341991 SRX1548330 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 2 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126254 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126254/SRR3126254.1 GSM2047229 SRA341991 SRX1548331 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 3 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126255 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126255/SRR3126255.1 GSM2047230 SRA341991 SRX1548332 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 4 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126256 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126256/SRR3126256.1 GSM2047231 SRA341991 SRX1548333 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 5 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126257 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126257/SRR3126257.1 GSM2047232 SRA341991 SRX1548334 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 6 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126258 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126258/SRR3126258.1 GSM2047233 SRA341991 SRX1548335 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 7 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126259 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126259/SRR3126259.1 GSM2047234 SRA341991 SRX1548336 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 8 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126260 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126260/SRR3126260.1 GSM2047235 SRA341991 SRX1548337 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 9 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126261 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126261/SRR3126261.1 GSM2047236 SRA341991 SRX1548338 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 10 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126262 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126262/SRR3126262.1 GSM2047237 SRA341991 SRX1548339 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 11 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126263 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126263/SRR3126263.1 GSM2047238 SRA341991 SRX1548340 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 12 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126264 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126264/SRR3126264.1 GSM2047239 SRA341991 SRX1548341 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 13 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126265 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126265/SRR3126265.1 GSM2047240 SRA341991 SRX1548342 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 14 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126266 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126266/SRR3126266.1 GSM2047241 SRA341991 SRX1548343 RNA-Seq SINGLE SRP068951 PRJNA309946 77281 15 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates. 0 57140 SRP068951 SRR3126267 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR3126267/SRR3126267.1 GSM2047242 SRA341991 SRX1548344 RNA-Seq SINGLE SRP068951 PRJNA309946 77363 1 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries. 27091726 52028 SRP069034 SRR3133151 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133151 GSM2050738 SRA342793 SRX1552576 ChIP-Seq SINGLE SRP069034 PRJNA310141 77363 2 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries. 27091726 52028 SRP069034 SRR3133152 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133152 GSM2050739 SRA342793 SRX1552577 ChIP-Seq SINGLE SRP069034 PRJNA310141 77363 3 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries. 27091726 52028 SRP069034 SRR3133153 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133153 GSM2050740 SRA342793 SRX1552578 ChIP-Seq SINGLE SRP069034 PRJNA310141 77363 4 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries. 27091726 52028 SRP069034 SRR3133154 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133154 GSM2050741 SRA342793 SRX1552579 ChIP-Seq SINGLE SRP069034 PRJNA310141 77363 5 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries. 27091726 52028 SRP069034 SRR3133155 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133155 GSM2050742 SRA342793 SRX1552580 ChIP-Seq SINGLE SRP069034 PRJNA310141 77363 6 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries. 27091726 52028 SRP069034 SRR3133156 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133156 GSM2050743 SRA342793 SRX1552581 ChIP-Seq SINGLE SRP069034 PRJNA310141 77364 1 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133166 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133166 GSM2050744 SRA342794 SRX1552582 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 2 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133167 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133167 GSM2050744 SRA342794 SRX1552582 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 3 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133168 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133168 GSM2050744 SRA342794 SRX1552582 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 4 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133169 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133169 GSM2050744 SRA342794 SRX1552582 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 5 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133170 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133170 GSM2050744 SRA342794 SRX1552582 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 6 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133171 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133171 GSM2050744 SRA342794 SRX1552582 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 7 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133172 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133172 GSM2050744 SRA342794 SRX1552582 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 8 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133173 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133173 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 9 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133174 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133174 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 10 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133175 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133175 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 11 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133176 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133176 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 12 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133177 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133177 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 13 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133178 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133178 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 14 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133179 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133179 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 15 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133180 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133180 GSM2050745 SRA342794 SRX1552583 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 16 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133181 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133181 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 17 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133182 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133182 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 18 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133183 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133183 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 19 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133184 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133184 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 20 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133185 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133185 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 21 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133186 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133186 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 22 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133187 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133187 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 23 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133188 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133188 GSM2050746 SRA342794 SRX1552584 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 24 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133189 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133189 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 25 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133190 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133190 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 26 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133191 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133191 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 27 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133192 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133192 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 28 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133193 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133193 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 29 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133194 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133194 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 30 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133195 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133195 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 31 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133196 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133196 GSM2050747 SRA342794 SRX1552585 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 32 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133197 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133197 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 33 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133198 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133198 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 34 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133199 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133199 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 35 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133200 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133200 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 36 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133201 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133201 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 37 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133202 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133202 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 38 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133203 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133203 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 39 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133204 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133204 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 40 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133205 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133205 GSM2050748 SRA342794 SRX1552586 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 41 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133206 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133206 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 42 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133207 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133207 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 43 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133208 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133208 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 44 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133209 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133209 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 45 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133210 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133210 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 46 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133211 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133211 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 47 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133212 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133212 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 48 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133213 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133213 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 49 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133214 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003059/SRR3133214 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77364 50 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair. 27091726 52028 SRP069035 SRR3133215 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003059/SRR3133215 GSM2050749 SRA342794 SRX1552587 RNA-Seq PAIRED SRP069035 PRJNA310139 77724 1 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157346 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157346 GSM2057921 SRA352385 SRX1568298 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 2 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157347 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157347 GSM2057922 SRA352385 SRX1568299 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 3 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157348 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157348 GSM2057923 SRA352385 SRX1568300 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 4 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157349 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157349 GSM2057924 SRA352385 SRX1568301 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 5 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157350 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003083/SRR3157350 GSM2057925 SRA352385 SRX1568302 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 6 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157351 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157351 GSM2057926 SRA352385 SRX1568303 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 7 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157352 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157352 GSM2057927 SRA352385 SRX1568304 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 8 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157353 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157353 GSM2057928 SRA352385 SRX1568305 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 9 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157354 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003083/SRR3157354 GSM2057929 SRA352385 SRX1568306 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 10 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157355 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157355 GSM2057930 SRA352385 SRX1568307 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 11 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157356 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003083/SRR3157356 GSM2057931 SRA352385 SRX1568308 RNA-Seq SINGLE SRP069816 PRJNA311315 77724 12 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method. With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs. To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus. In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left). At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads. To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples). To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample). These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing. 27471010 52302 SRP069816 SRR3157357 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003083/SRR3157357 GSM2057932 SRA352385 SRX1568309 RNA-Seq SINGLE SRP069816 PRJNA311315 78176 1 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182668 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182668 GSM2068802 SRA356925 SRX1596710 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 2 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182669 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003108/SRR3182669 GSM2068802 SRA356925 SRX1596710 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 3 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182670 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182670 GSM2068803 SRA356925 SRX1596711 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 4 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182671 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182671 GSM2068804 SRA356925 SRX1596712 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 5 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182672 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182672 GSM2068804 SRA356925 SRX1596712 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 6 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182673 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003108/SRR3182673 GSM2068805 SRA356925 SRX1596713 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 7 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182674 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182674 GSM2068806 SRA356925 SRX1596714 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 8 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182675 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003108/SRR3182675 GSM2068807 SRA356925 SRX1596715 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 9 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182676 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182676 GSM2068808 SRA356925 SRX1596716 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 10 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182677 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182677 GSM2068809 SRA356925 SRX1596717 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 11 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182678 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182678 GSM2068810 SRA356925 SRX1596718 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 12 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182679 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003108/SRR3182679 GSM2068811 SRA356925 SRX1596719 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 13 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182680 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182680 GSM2068812 SRA356925 SRX1596720 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 14 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182681 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/003108/SRR3182681 GSM2068813 SRA356925 SRX1596721 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 15 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182682 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182682 GSM2068814 SRA356925 SRX1596722 ChIP-Seq SINGLE SRP070664 PRJNA312836 78176 16 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)). We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background. 28103240 53709 SRP070664 SRR3182683 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003108/SRR3182683 GSM2068815 SRA356925 SRX1596723 ChIP-Seq SINGLE SRP070664 PRJNA312836 78854 1 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201255 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201255 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 2 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201256 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201256 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 3 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201257 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201257 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 4 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201258 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201258 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 5 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201259 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201259 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 6 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201260 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201260 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 7 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201261 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201261 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 8 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201262 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201262 GSM2079619 SRA366069 SRX1610974 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 9 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201263 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201263 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 10 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201264 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201264 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 11 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201265 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201265 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 12 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201266 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201266 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 13 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201267 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201267 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 14 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201268 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201268 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 15 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201269 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201269 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 16 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201270 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201270 GSM2079620 SRA366069 SRX1610975 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 17 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201271 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201271 GSM2079621 SRA366069 SRX1610976 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 18 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201272 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201272 GSM2079621 SRA366069 SRX1610976 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 19 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201273 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201273 GSM2079621 SRA366069 SRX1610976 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 20 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201274 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201274 GSM2079621 SRA366069 SRX1610976 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 21 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201275 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201275 GSM2079621 SRA366069 SRX1610976 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 22 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201276 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201276 GSM2079621 SRA366069 SRX1610976 miRNA-Seq SINGLE SRP071089 PRJNA314143 78854 23 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core. 28867550 53988 SRP071089 SRR3201277 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003126/SRR3201277 GSM2079621 SRA366069 SRX1610976 miRNA-Seq SINGLE SRP071089 PRJNA314143 80971 1 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469769 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469769 GSM2139449 SRA422827 SRX1738127 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 2 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469770 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469770 GSM2139449 SRA422827 SRX1738127 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 3 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469771 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469771 GSM2139450 SRA422827 SRX1738128 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 4 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469772 https://sra-download.ncbi.nlm.nih.gov/traces/sra40/SRR/003388/SRR3469772 GSM2139450 SRA422827 SRX1738128 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 5 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469773 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469773 GSM2139451 SRA422827 SRX1738129 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 6 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469774 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469774 GSM2139451 SRA422827 SRX1738129 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 7 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469775 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469775 GSM2139452 SRA422827 SRX1738130 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 8 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469776 https://sra-download.ncbi.nlm.nih.gov/traces/sra40/SRR/003388/SRR3469776 GSM2139452 SRA422827 SRX1738130 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 9 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469777 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469777 GSM2139453 SRA422827 SRX1738131 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 10 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469778 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/003388/SRR3469778 GSM2139453 SRA422827 SRX1738131 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 11 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469779 https://sra-download.ncbi.nlm.nih.gov/traces/sra40/SRR/003388/SRR3469779 GSM2139454 SRA422827 SRX1738132 RNA-Seq PAIRED SRP074230 PRJNA320214 80971 12 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs. 28096217 53019 SRP074230 SRR3469780 https://sra-download.ncbi.nlm.nih.gov/traces/sra40/SRR/003388/SRR3469780 GSM2139454 SRA422827 SRX1738132 RNA-Seq PAIRED SRP074230 PRJNA320214 81458 1 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509723 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003427/SRR3509723 GSM2152748 SRA425738 SRX1763440 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 2 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509724 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/003427/SRR3509724 GSM2152749 SRA425738 SRX1763441 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 3 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509725 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003427/SRR3509725 GSM2152750 SRA425738 SRX1763442 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 4 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509726 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/003427/SRR3509726 GSM2152751 SRA425738 SRX1763443 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 5 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509727 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003427/SRR3509727 GSM2152752 SRA425738 SRX1763444 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 6 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509728 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/003427/SRR3509728 GSM2152753 SRA425738 SRX1763445 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 7 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509729 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003427/SRR3509729 GSM2152754 SRA425738 SRX1763446 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 8 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509730 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/003427/SRR3509730 GSM2152755 SRA425738 SRX1763447 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 9 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509731 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003427/SRR3509731 GSM2152756 SRA425738 SRX1763448 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 10 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509732 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/003427/SRR3509732 GSM2152757 SRA425738 SRX1763449 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 11 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509733 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/003427/SRR3509733 GSM2152758 SRA425738 SRX1763450 RNA-Seq SINGLE SRP075201 PRJNA321667 81458 12 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate. 27475627 52307 SRP075201 SRR3509734 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/003427/SRR3509734 GSM2152759 SRA425738 SRX1763451 RNA-Seq SINGLE SRP075201 PRJNA321667 82153 1 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620839 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620839/SRR3620839.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 2 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620840 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620840/SRR3620840.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 3 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620841 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620841/SRR3620841.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 4 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620842 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620842/SRR3620842.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 5 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620843 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620843/SRR3620843.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 6 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620844 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620844/SRR3620844.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 7 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620845 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620845/SRR3620845.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 8 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620846 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620846/SRR3620846.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 9 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620847 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620847/SRR3620847.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 10 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620848 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620848/SRR3620848.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 11 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620849 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620849/SRR3620849.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 12 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620850 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620850/SRR3620850.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 13 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620851 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620851/SRR3620851.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 14 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620852 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620852/SRR3620852.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 15 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620853 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620853/SRR3620853.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 16 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620854 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620854/SRR3620854.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 17 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620855 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620855/SRR3620855.1 GSM2184890 SRA430469 SRX1816638 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 18 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620856 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620856/SRR3620856.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 19 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620857 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620857/SRR3620857.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 20 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620858 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620858/SRR3620858.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 21 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620859 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620859/SRR3620859.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 22 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620860 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620860/SRR3620860.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 23 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620861 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620861/SRR3620861.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 24 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620862 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620862/SRR3620862.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 25 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620863 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620863/SRR3620863.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 26 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620864 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620864/SRR3620864.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 27 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620865 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620865/SRR3620865.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 28 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620866 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620866/SRR3620866.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 29 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620867 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620867/SRR3620867.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 30 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620868 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620868/SRR3620868.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 31 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620869 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620869/SRR3620869.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 82153 32 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 SRR3620870 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR3620870/SRR3620870.1 GSM2184891 SRA430469 SRX1816639 ChIP-Seq SINGLE SRP076016 PRJNA324187 83784 1 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723149 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723149 GSM2218802 SRA436183 SRX1880836 miRNA-Seq SINGLE SRP077327 PRJNA326974 83784 2 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723150 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723150 GSM2218803 SRA436183 SRX1880837 miRNA-Seq SINGLE SRP077327 PRJNA326974 83784 3 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723151 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723151 GSM2218804 SRA436183 SRX1880838 miRNA-Seq SINGLE SRP077327 PRJNA326974 83784 4 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723152 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723152 GSM2218805 SRA436183 SRX1880839 miRNA-Seq SINGLE SRP077327 PRJNA326974 83784 5 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723153 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723153 GSM2218806 SRA436183 SRX1880840 miRNA-Seq SINGLE SRP077327 PRJNA326974 83784 6 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723154 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723154 GSM2218807 SRA436183 SRX1880841 miRNA-Seq SINGLE SRP077327 PRJNA326974 83784 7 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723155 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723155 GSM2218808 SRA436183 SRX1880842 OTHER PAIRED SRP077327 PRJNA326974 83784 8 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723156 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723156 GSM2218809 SRA436183 SRX1880843 OTHER PAIRED SRP077327 PRJNA326974 83784 9 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723157 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723157 GSM2218810 SRA436183 SRX1880844 OTHER PAIRED SRP077327 PRJNA326974 83784 10 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723158 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723158 GSM2218811 SRA436183 SRX1880845 OTHER PAIRED SRP077327 PRJNA326974 83784 11 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723159 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723159 GSM2218812 SRA436183 SRX1880846 OTHER PAIRED SRP077327 PRJNA326974 83784 12 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723160 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723160 GSM2218813 SRA436183 SRX1880847 OTHER PAIRED SRP077327 PRJNA326974 83784 13 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723161 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723161 GSM2218814 SRA436183 SRX1880848 OTHER PAIRED SRP077327 PRJNA326974 83784 14 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723162 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723162 GSM2218815 SRA436183 SRX1880849 OTHER PAIRED SRP077327 PRJNA326974 83784 15 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723163 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723163 GSM2218816 SRA436183 SRX1880850 OTHER PAIRED SRP077327 PRJNA326974 83784 16 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723164 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723164 GSM2218817 SRA436183 SRX1880851 OTHER PAIRED SRP077327 PRJNA326974 83784 17 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723165 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723165 GSM2218818 SRA436183 SRX1880852 OTHER PAIRED SRP077327 PRJNA326974 83784 18 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723166 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723166 GSM2218819 SRA436183 SRX1880853 RNA-Seq PAIRED SRP077327 PRJNA326974 83784 19 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723167 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723167 GSM2218820 SRA436183 SRX1880854 RNA-Seq PAIRED SRP077327 PRJNA326974 83784 20 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723168 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723168 GSM2218821 SRA436183 SRX1880855 RNA-Seq PAIRED SRP077327 PRJNA326974 83784 21 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723169 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723169 GSM2218822 SRA436183 SRX1880856 RNA-Seq PAIRED SRP077327 PRJNA326974 83784 22 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723170 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723170 GSM2218823 SRA436183 SRX1880857 RNA-Seq PAIRED SRP077327 PRJNA326974 83784 23 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 SRR3723171 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/003635/SRR3723171 GSM2218824 SRA436183 SRX1880858 RNA-Seq PAIRED SRP077327 PRJNA326974 85273 1 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011696 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011696 GSM2263590 SRA449640 SRX2007793 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 2 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011697 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011697 GSM2263590 SRA449640 SRX2007793 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 3 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011698 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011698 GSM2263591 SRA449640 SRX2007794 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 4 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011699 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011699 GSM2263591 SRA449640 SRX2007794 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 5 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011700 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011700 GSM2263592 SRA449640 SRX2007795 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 6 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011701 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011701 GSM2263593 SRA449640 SRX2007796 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 7 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011702 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011702 GSM2263593 SRA449640 SRX2007796 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 8 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011703 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011703 GSM2263594 SRA449640 SRX2007797 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 9 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011704 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011704 GSM2263594 SRA449640 SRX2007797 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 10 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011705 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011705 GSM2263595 SRA449640 SRX2007798 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 11 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011706 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011706 GSM2263595 SRA449640 SRX2007798 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 12 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011707 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011707 GSM2263596 SRA449640 SRX2007799 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 13 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011708 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011708 GSM2263596 SRA449640 SRX2007799 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 14 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011709 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011709 GSM2263597 SRA449640 SRX2007800 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 15 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011710 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011710 GSM2263598 SRA449640 SRX2007801 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 16 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011711 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011711 GSM2263599 SRA449640 SRX2007802 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 17 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011712 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011712 GSM2263599 SRA449640 SRX2007802 ChIP-Seq SINGLE SRP081096 PRJNA338166 85273 18 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record. 28325473 53575 SRP081096 SRR4011713 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/003917/SRR4011713 GSM2263600 SRA449640 SRX2007803 ChIP-Seq SINGLE SRP081096 PRJNA338166 86382 1 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates. 29266590 54381 SRP084249 SRR4120004 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004023/SRR4120004 GSM2301411 SRA459848 SRX2100827 RNA-Seq SINGLE SRP084249 PRJNA341579 86382 2 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates. 29266590 54381 SRP084249 SRR4120005 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004023/SRR4120005 GSM2301412 SRA459848 SRX2100828 RNA-Seq SINGLE SRP084249 PRJNA341579 86382 3 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates. 29266590 54381 SRP084249 SRR4120006 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004023/SRR4120006 GSM2301413 SRA459848 SRX2100829 RNA-Seq SINGLE SRP084249 PRJNA341579 86382 4 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates. 29266590 54381 SRP084249 SRR4120007 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004023/SRR4120007 GSM2301414 SRA459848 SRX2100830 RNA-Seq SINGLE SRP084249 PRJNA341579 86382 5 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates. 29266590 54381 SRP084249 SRR4120008 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004023/SRR4120008 GSM2301415 SRA459848 SRX2100831 RNA-Seq SINGLE SRP084249 PRJNA341579 86649 1 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241282 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241282 GSM2308328 SRA470686 SRX2162254 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 2 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241283 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241283 GSM2308329 SRA470686 SRX2162255 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 3 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241284 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241284 GSM2308330 SRA470686 SRX2162256 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 4 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241285 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241285 GSM2308331 SRA470686 SRX2162257 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 5 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241286 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241286 GSM2308332 SRA470686 SRX2162258 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 6 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241287 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241287 GSM2308333 SRA470686 SRX2162259 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 7 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241288 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241288 GSM2308334 SRA470686 SRX2162260 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 8 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241289 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241289 GSM2308335 SRA470686 SRX2162261 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 9 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241290 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241290 GSM2308336 SRA470686 SRX2162262 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 10 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241291 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241291 GSM2308337 SRA470686 SRX2162263 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 11 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241292 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241292 GSM2308338 SRA470686 SRX2162264 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 12 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241293 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241293 GSM2308339 SRA470686 SRX2162265 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 13 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241294 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241294 GSM2308340 SRA470686 SRX2162266 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 14 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241295 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241295 GSM2308341 SRA470686 SRX2162267 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 15 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241296 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241296 GSM2308342 SRA470686 SRX2162268 RNA-Seq PAIRED SRP089812 PRJNA342823 86649 16 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC). 0 57684 SRP089812 SRR4241297 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004141/SRR4241297 GSM2308343 SRA470686 SRX2162269 RNA-Seq PAIRED SRP089812 PRJNA342823 86883 1 Cei Abreu-Goodger miR-182 regulates Slit2-mediated axon guidance by modulating the local translation of a specific mRNA During brain wiring, mRNAs are trafficked into axons and growth cones where they are differentially translated in response to extrinsic signals. Diffe Cei Abreu-Goodger, Anaïs Bellon, Archana Iyer, Simone Bridi, Flora Lee, Cesaré Ovando-Vázquez, Eloina Corradi, Sara Longhi, Michela Rocuzzo, Stephanie Strohbuecker, Sindhu Naik, Peter Sarkies, Eric Miska, Christine Holt, Marie-Laure Baudet Two biological replicates, one condition 28147273 53046 SRP089815 SRR4241439 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004142/SRR4241439 GSM2309835 SRA470711 SRX2162412 miRNA-Seq SINGLE SRP089815 PRJNA342827 86883 2 Cei Abreu-Goodger miR-182 regulates Slit2-mediated axon guidance by modulating the local translation of a specific mRNA During brain wiring, mRNAs are trafficked into axons and growth cones where they are differentially translated in response to extrinsic signals. Diffe Cei Abreu-Goodger, Anaïs Bellon, Archana Iyer, Simone Bridi, Flora Lee, Cesaré Ovando-Vázquez, Eloina Corradi, Sara Longhi, Michela Rocuzzo, Stephanie Strohbuecker, Sindhu Naik, Peter Sarkies, Eric Miska, Christine Holt, Marie-Laure Baudet Two biological replicates, one condition 28147273 53046 SRP089815 SRR4241440 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/004142/SRR4241440 GSM2309836 SRA470711 SRX2162413 miRNA-Seq SINGLE SRP089815 PRJNA342827 87652 1 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346390 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346390 GSM2337671 SRA482196 SRX2213215 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 2 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346391 https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/004244/SRR4346391 GSM2337672 SRA482196 SRX2213216 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 3 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346392 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004244/SRR4346392 GSM2337673 SRA482196 SRX2213217 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 4 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346393 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004244/SRR4346393 GSM2337674 SRA482196 SRX2213218 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 5 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346394 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/004244/SRR4346394 GSM2337675 SRA482196 SRX2213219 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 6 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346395 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/004244/SRR4346395 GSM2337676 SRA482196 SRX2213220 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 7 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346396 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004244/SRR4346396 GSM2337677 SRA482196 SRX2213221 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 8 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346397 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346397 GSM2337678 SRA482196 SRX2213222 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 9 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346398 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004244/SRR4346398 GSM2337679 SRA482196 SRX2213223 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 10 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346399 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004244/SRR4346399 GSM2337680 SRA482196 SRX2213224 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 11 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346400 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004244/SRR4346400 GSM2337681 SRA482196 SRX2213225 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 12 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346401 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346401 GSM2337682 SRA482196 SRX2213226 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 13 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346402 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004244/SRR4346402 GSM2337683 SRA482196 SRX2213227 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 14 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346403 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004244/SRR4346403 GSM2337684 SRA482196 SRX2213228 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 15 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346404 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/004244/SRR4346404 GSM2337685 SRA482196 SRX2213229 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 16 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346405 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346405 GSM2337686 SRA482196 SRX2213230 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 17 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346406 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004244/SRR4346406 GSM2337687 SRA482196 SRX2213231 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 18 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346407 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004244/SRR4346407 GSM2337688 SRA482196 SRX2213232 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 19 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346408 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004244/SRR4346408 GSM2337689 SRA482196 SRX2213233 ChIP-Seq SINGLE SRP090888 PRJNA345495 87652 20 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 SRR4346409 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004244/SRR4346409 GSM2337690 SRA482196 SRX2213234 ChIP-Seq SINGLE SRP090888 PRJNA345495 87653 1 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346410 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004244/SRR4346410 GSM2337691 SRA482197 SRX2213235 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 2 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346411 https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/004244/SRR4346411 GSM2337692 SRA482197 SRX2213236 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 3 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346412 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004244/SRR4346412 GSM2337693 SRA482197 SRX2213237 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 4 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346413 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004244/SRR4346413 GSM2337694 SRA482197 SRX2213238 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 5 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346414 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004244/SRR4346414 GSM2337695 SRA482197 SRX2213239 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 6 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346415 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004244/SRR4346415 GSM2337696 SRA482197 SRX2213240 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 7 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346416 https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/004244/SRR4346416 GSM2337697 SRA482197 SRX2213241 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 8 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346417 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346417 GSM2337698 SRA482197 SRX2213242 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 9 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346418 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004244/SRR4346418 GSM2337699 SRA482197 SRX2213243 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 10 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346419 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004244/SRR4346419 GSM2337700 SRA482197 SRX2213244 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 11 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346420 https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/004244/SRR4346420 GSM2337701 SRA482197 SRX2213245 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 12 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346421 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004244/SRR4346421 GSM2337702 SRA482197 SRX2213246 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 13 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346422 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004244/SRR4346422 GSM2337703 SRA482197 SRX2213247 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 14 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346423 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004244/SRR4346423 GSM2337704 SRA482197 SRX2213248 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 15 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346424 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004244/SRR4346424 GSM2337705 SRA482197 SRX2213249 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 16 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346425 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/004244/SRR4346425 GSM2337706 SRA482197 SRX2213250 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 17 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346426 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004244/SRR4346426 GSM2337707 SRA482197 SRX2213251 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 18 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346427 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/004244/SRR4346427 GSM2337708 SRA482197 SRX2213252 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 19 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346428 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004244/SRR4346428 GSM2337709 SRA482197 SRX2213253 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 20 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346429 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004244/SRR4346429 GSM2337710 SRA482197 SRX2213254 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 21 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346430 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346430 GSM2337711 SRA482197 SRX2213255 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 22 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346431 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/004244/SRR4346431 GSM2337712 SRA482197 SRX2213256 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 23 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346432 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004244/SRR4346432 GSM2337713 SRA482197 SRX2213257 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 24 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346433 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004244/SRR4346433 GSM2337714 SRA482197 SRX2213258 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 25 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346434 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/004244/SRR4346434 GSM2337715 SRA482197 SRX2213259 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 26 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346435 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346435 GSM2337716 SRA482197 SRX2213260 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 27 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346436 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/004244/SRR4346436 GSM2337717 SRA482197 SRX2213261 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 28 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346437 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/004244/SRR4346437 GSM2337718 SRA482197 SRX2213262 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 29 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346438 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/004244/SRR4346438 GSM2337719 SRA482197 SRX2213263 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 30 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346439 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/004244/SRR4346439 GSM2337720 SRA482197 SRX2213264 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 31 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346440 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004244/SRR4346440 GSM2337721 SRA482197 SRX2213265 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 32 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346441 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004244/SRR4346441 GSM2337722 SRA482197 SRX2213266 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 33 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346442 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/004244/SRR4346442 GSM2337723 SRA482197 SRX2213267 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 34 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346443 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004244/SRR4346443 GSM2337724 SRA482197 SRX2213268 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 35 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346444 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004244/SRR4346444 GSM2337725 SRA482197 SRX2213269 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 36 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346445 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/004244/SRR4346445 GSM2337726 SRA482197 SRX2213270 RNA-Seq SINGLE SRP090889 PRJNA345496 87653 37 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 SRR4346446 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004244/SRR4346446 GSM2337727 SRA482197 SRX2213271 RNA-Seq SINGLE SRP090889 PRJNA345496 87872 1 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417743 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004314/SRR4417743 GSM2342126 SRA483678 SRX2240126 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 2 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417744 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417744 GSM2342127 SRA483678 SRX2240127 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 3 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417745 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/004314/SRR4417745 GSM2342128 SRA483678 SRX2240128 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 4 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417746 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/004314/SRR4417746 GSM2342129 SRA483678 SRX2240129 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 5 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417747 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417747 GSM2342130 SRA483678 SRX2240130 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 6 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417748 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/004314/SRR4417748 GSM2342131 SRA483678 SRX2240131 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 7 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417749 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/004314/SRR4417749 GSM2342132 SRA483678 SRX2240132 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 8 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417750 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004314/SRR4417750 GSM2342133 SRA483678 SRX2240133 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 9 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417751 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417751 GSM2342134 SRA483678 SRX2240134 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 10 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417752 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/004314/SRR4417752 GSM2342135 SRA483678 SRX2240135 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 11 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417753 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004314/SRR4417753 GSM2342136 SRA483678 SRX2240136 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 12 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417754 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417754 GSM2342137 SRA483678 SRX2240137 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 13 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417755 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004314/SRR4417755 GSM2342138 SRA483678 SRX2240138 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 14 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417756 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417756 GSM2342139 SRA483678 SRX2240139 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 15 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417757 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004314/SRR4417757 GSM2342140 SRA483678 SRX2240140 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 16 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417758 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004314/SRR4417758 GSM2342141 SRA483678 SRX2240141 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 17 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417759 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004314/SRR4417759 GSM2342142 SRA483678 SRX2240142 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 18 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417760 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417760 GSM2342143 SRA483678 SRX2240143 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 19 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417761 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004314/SRR4417761 GSM2342144 SRA483678 SRX2240144 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 20 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417762 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004314/SRR4417762 GSM2342145 SRA483678 SRX2240145 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 21 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417763 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417763 GSM2342146 SRA483678 SRX2240146 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 22 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417764 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004314/SRR4417764 GSM2342147 SRA483678 SRX2240147 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 23 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417765 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004314/SRR4417765 GSM2342148 SRA483678 SRX2240148 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 24 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417766 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004314/SRR4417766 GSM2342149 SRA483678 SRX2240149 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 25 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417767 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004314/SRR4417767 GSM2342150 SRA483678 SRX2240150 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 26 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417768 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004314/SRR4417768 GSM2342151 SRA483678 SRX2240151 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 27 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417769 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004314/SRR4417769 GSM2342152 SRA483678 SRX2240152 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 28 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417770 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004314/SRR4417770 GSM2342153 SRA483678 SRX2240153 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 29 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417771 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004314/SRR4417771 GSM2342154 SRA483678 SRX2240154 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 30 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417772 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/004314/SRR4417772 GSM2342155 SRA483678 SRX2240155 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 31 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417773 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417773 GSM2342156 SRA483678 SRX2240156 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 32 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417774 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004314/SRR4417774 GSM2342157 SRA483678 SRX2240157 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 33 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417775 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/004314/SRR4417775 GSM2342158 SRA483678 SRX2240158 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 34 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417776 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417776 GSM2342159 SRA483678 SRX2240159 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 35 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417777 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/004314/SRR4417777 GSM2342160 SRA483678 SRX2240160 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 36 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417778 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004314/SRR4417778 GSM2342161 SRA483678 SRX2240161 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 37 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417779 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004314/SRR4417779 GSM2342162 SRA483678 SRX2240162 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 38 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417780 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004314/SRR4417780 GSM2342163 SRA483678 SRX2240163 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 39 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417781 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/004314/SRR4417781 GSM2342164 SRA483678 SRX2240164 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 40 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417782 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/004314/SRR4417782 GSM2342165 SRA483678 SRX2240165 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 41 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417783 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/004314/SRR4417783 GSM2342166 SRA483678 SRX2240166 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 42 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417784 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/004314/SRR4417784 GSM2342167 SRA483678 SRX2240167 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 43 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417785 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004314/SRR4417785 GSM2342168 SRA483678 SRX2240168 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 44 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417786 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004314/SRR4417786 GSM2342169 SRA483678 SRX2240169 RNA-Seq SINGLE SRP091439 PRJNA347982 87872 45 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417787 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/004314/SRR4417787 GSM2342170 SRA483678 SRX2240170 ChIP-Seq SINGLE SRP091439 PRJNA347982 87872 46 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417788 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/004314/SRR4417788 GSM2342171 SRA483678 SRX2240171 ChIP-Seq SINGLE SRP091439 PRJNA347982 87872 47 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417789 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/004314/SRR4417789 GSM2342172 SRA483678 SRX2240172 ChIP-Seq SINGLE SRP091439 PRJNA347982 87872 48 Charles Bradshaw Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways Understanding the mechanism of resistance of certain genes to reactivation will help improving the success of nuclear reprogramming. Here, in a Xenopu Charles Bradshaw, Jerome Jullien, Munender Vodnala, George Allen, Charles Bradshaw, Vincent Pasque, Nathalie Beaujean, Stan Wang, Haruhiko Koseki, Vitorio Sartorelli, John Gurdon 36 samples, single-ended RNA-seq libraries from MEF or mES nuclei transplanted to Xenopus oocytes; 8 samples, single-ended RNA-seq libraries from mES cloned two-cell stage embryos; 4 samples single-ended ChIP-seq librarys (H2Aub antibody) from MEF transplanted to Xenopus oocytes. 28257702 53077 SRP091439 SRR4417790 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004314/SRR4417790 GSM2342173 SRA483678 SRX2240173 ChIP-Seq SINGLE SRP091439 PRJNA347982 88975 1 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435588 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004331/SRR4435588 GSM2356631 SRA486089 SRX2254815 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 2 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435589 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004331/SRR4435589 GSM2356632 SRA486089 SRX2254816 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 3 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435590 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/004331/SRR4435590 GSM2356633 SRA486089 SRX2254817 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 4 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435591 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004331/SRR4435591 GSM2356634 SRA486089 SRX2254818 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 5 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435592 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004331/SRR4435592 GSM2356635 SRA486089 SRX2254819 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 6 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435593 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/004331/SRR4435593 GSM2356636 SRA486089 SRX2254820 RNA-Seq PAIRED SRP091865 PRJNA349464 88975 7 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435594 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004331/SRR4435594 GSM2356637 SRA486089 SRX2254821 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 8 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435595 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004331/SRR4435595 GSM2356638 SRA486089 SRX2254822 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 9 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435596 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004331/SRR4435596 GSM2356639 SRA486089 SRX2254823 RNA-Seq SINGLE SRP091865 PRJNA349464 88975 10 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples. The 0 hpa time point samples the tissue directly adjacent to the initial cut site. Regenerating tail samples collected up to 72 hpa. Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq. 28095651 53040 SRP091865 SRR4435597 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/004331/SRR4435597 GSM2356640 SRA486089 SRX2254824 RNA-Seq SINGLE SRP091865 PRJNA349464 89165 1 Zhihua Jiang Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis. We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries from two male frogs and two female frogs were involved in this submission. 30729254 55685 SRP092052 SRR4449921 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/004345/SRR4449921 GSM2359906 SRA486795 SRX2268037 RNA-Seq SINGLE SRP092052 PRJNA350509 89165 2 Zhihua Jiang Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis. We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries from two male frogs and two female frogs were involved in this submission. 30729254 55685 SRP092052 SRR4449922 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004345/SRR4449922 GSM2359907 SRA486795 SRX2268038 RNA-Seq SINGLE SRP092052 PRJNA350509 89165 3 Zhihua Jiang Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis. We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries from two male frogs and two female frogs were involved in this submission. 30729254 55685 SRP092052 SRR4449923 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004345/SRR4449923 GSM2359908 SRA486795 SRX2268039 RNA-Seq SINGLE SRP092052 PRJNA350509 89165 4 Zhihua Jiang Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis. We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries from two male frogs and two female frogs were involved in this submission. 30729254 55685 SRP092052 SRR4449924 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/004345/SRR4449924 GSM2359909 SRA486795 SRX2268040 RNA-Seq SINGLE SRP092052 PRJNA350509 89271 1 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473800 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004368/SRR4473800 GSM2363456 SRA487358 SRX2279685 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 2 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473801 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/004368/SRR4473801 GSM2363457 SRA487358 SRX2279686 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 3 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473802 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004368/SRR4473802 GSM2363458 SRA487358 SRX2279687 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 4 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473803 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/004368/SRR4473803 GSM2363459 SRA487358 SRX2279688 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 5 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473804 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004368/SRR4473804 GSM2363460 SRA487358 SRX2279689 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 6 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473805 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/004368/SRR4473805 GSM2363461 SRA487358 SRX2279690 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 7 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473806 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/004368/SRR4473806 GSM2363462 SRA487358 SRX2279691 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 8 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473807 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/004368/SRR4473807 GSM2363463 SRA487358 SRX2279692 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 9 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473808 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004368/SRR4473808 GSM2363464 SRA487358 SRX2279693 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 10 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473809 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/004368/SRR4473809 GSM2363465 SRA487358 SRX2279694 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 11 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473810 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/004368/SRR4473810 GSM2363466 SRA487358 SRX2279695 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 12 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473811 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004368/SRR4473811 GSM2363467 SRA487358 SRX2279696 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 13 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473812 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/004368/SRR4473812 GSM2363468 SRA487358 SRX2279697 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 14 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4473813 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/004368/SRR4473813 GSM2363469 SRA487358 SRX2279698 ChIP-Seq SINGLE SRP092243 PRJNA351216 89271 15 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4478521 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/004373/SRR4478521 GSM2364660 SRA487358 SRX2281883 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 16 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4478522 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/004373/SRR4478522 GSM2364661 SRA487358 SRX2281884 RNA-Seq SINGLE SRP092243 PRJNA351216 89271 17 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+ RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations. 27864379 52793 SRP092243 SRR4478523 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/004373/SRR4478523 GSM2364662 SRA487358 SRX2281885 RNA-Seq SINGLE SRP092243 PRJNA351216 90898 1 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077831 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077831 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 2 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077832 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077832 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 3 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077833 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077833 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 4 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077834 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077834 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 5 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077835 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077835 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 6 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077836 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077836 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 7 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077837 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077837 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 8 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077838 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077838 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 9 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077839 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077839 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 10 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077840 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077840 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 11 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077841 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077841 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 12 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077842 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077842 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 13 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077843 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077843 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 14 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077844 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077844 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 15 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077845 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077845 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 16 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077846 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077846 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 17 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077847 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077847 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 18 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077848 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077848 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 19 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077849 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077849 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 20 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077850 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077850 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 21 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077851 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077851 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 22 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077852 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077852 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 23 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077853 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077853 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 24 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077854 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077854 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 25 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077855 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077855 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 26 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077856 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077856 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 27 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077857 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077857 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 28 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077858 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077858 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 29 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077859 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077859 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 30 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077860 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077860 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 31 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077861 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077861 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 32 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077862 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077862 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 33 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077863 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077863 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 34 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077864 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077864 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 35 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077865 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077865 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 36 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077866 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077866 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 37 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077867 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077867 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 38 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077868 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077868 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 39 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077869 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077869 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 40 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077870 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077870 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 41 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077871 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077871 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 42 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077872 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077872 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 43 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077873 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077873 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 44 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077874 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077874 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 45 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077875 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077875 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 46 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077876 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077876 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 47 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077877 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077877 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 48 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077878 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077878 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 49 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077879 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077879 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 50 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077880 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077880 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 51 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077881 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077881 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 52 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077882 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077882 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 53 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077883 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077883 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 90898 54 Ozren Bogdanovic Single-base resolution methylomes of Xenopus laevis x Xenopus tropicalis embryos Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates. The most recent vertebrate genom Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus tropicalis x Xenopus laevis st.10.5 embryos. 29065907 54195 SRP094579 SRR5077884 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004958/SRR5077884 GSM2417228 SRA500859 SRX2396569 Bisulfite-Seq SINGLE SRP094579 PRJNA356296 92366 1 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109836 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109836 GSM2428182 SRA503451 SRX2422228 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 2 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109837 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109837 GSM2428183 SRA503451 SRX2422229 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 3 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109838 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109838 GSM2428184 SRA503451 SRX2422230 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 4 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109839 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109839 GSM2428185 SRA503451 SRX2422231 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 5 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109840 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109840 GSM2428186 SRA503451 SRX2422232 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 6 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109841 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109841 GSM2428187 SRA503451 SRX2422233 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 7 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109842 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109842 GSM2428188 SRA503451 SRX2422234 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 8 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109843 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109843 GSM2428189 SRA503451 SRX2422235 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 9 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109844 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109844 GSM2428190 SRA503451 SRX2422236 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 10 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109845 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109845 GSM2428191 SRA503451 SRX2422237 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 11 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109846 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109846 GSM2428192 SRA503451 SRX2422238 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 12 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109847 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109847 GSM2428193 SRA503451 SRX2422239 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 13 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109848 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109848 GSM2428194 SRA503451 SRX2422240 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 14 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109849 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109849 GSM2428195 SRA503451 SRX2422241 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 15 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109850 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109850 GSM2428196 SRA503451 SRX2422242 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 16 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109851 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109851 GSM2428197 SRA503451 SRX2422243 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 17 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109852 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109852 GSM2428198 SRA503451 SRX2422244 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 18 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109853 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109853 GSM2428199 SRA503451 SRX2422245 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 19 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109854 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109854 GSM2428200 SRA503451 SRX2422246 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 20 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109855 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109855 GSM2428201 SRA503451 SRX2422247 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 21 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109856 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109856 GSM2428202 SRA503451 SRX2422248 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 22 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109857 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109857 GSM2428203 SRA503451 SRX2422249 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 23 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109858 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109858 GSM2428204 SRA503451 SRX2422250 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 24 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109859 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109859 GSM2428205 SRA503451 SRX2422251 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 25 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109860 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109860 GSM2428206 SRA503451 SRX2422252 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 26 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109861 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109861 GSM2428207 SRA503451 SRX2422253 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 27 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109862 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109862 GSM2428208 SRA503451 SRX2422254 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 28 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109863 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109863 GSM2428209 SRA503451 SRX2422255 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 29 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109864 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109864 GSM2428210 SRA503451 SRX2422256 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 30 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109865 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109865 GSM2428211 SRA503451 SRX2422257 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 31 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109866 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109866 GSM2428212 SRA503451 SRX2422258 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 32 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109867 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109867 GSM2428213 SRA503451 SRX2422259 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 33 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109868 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109868 GSM2428214 SRA503451 SRX2422260 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 34 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109869 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109869 GSM2428215 SRA503451 SRX2422261 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 35 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109870 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109870 GSM2428216 SRA503451 SRX2422262 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 36 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109871 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109871 GSM2428217 SRA503451 SRX2422263 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 37 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109872 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109872 GSM2428218 SRA503451 SRX2422264 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 38 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109873 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109873 GSM2428219 SRA503451 SRX2422265 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 39 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109874 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109874 GSM2428220 SRA503451 SRX2422266 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 40 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109875 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109875 GSM2428221 SRA503451 SRX2422267 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 41 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109876 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109876 GSM2428222 SRA503451 SRX2422268 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 42 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109877 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109877 GSM2428223 SRA503451 SRX2422269 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 43 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109878 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109878 GSM2428224 SRA503451 SRX2422270 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 44 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109879 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109879 GSM2428225 SRA503451 SRX2422271 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 45 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109880 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109880 GSM2428226 SRA503451 SRX2422272 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 46 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109881 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109881 GSM2428227 SRA503451 SRX2422273 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 47 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109882 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109882 GSM2428228 SRA503451 SRX2422274 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 48 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109883 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109883 GSM2428229 SRA503451 SRX2422275 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 49 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109884 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109884 GSM2428230 SRA503451 SRX2422276 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 50 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109885 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109885 GSM2428231 SRA503451 SRX2422277 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 51 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109886 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109886 GSM2428232 SRA503451 SRX2422278 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 52 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109887 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109887 GSM2428233 SRA503451 SRX2422279 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 53 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109888 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109888 GSM2428234 SRA503451 SRX2422280 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 54 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109889 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109889 GSM2428235 SRA503451 SRX2422281 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 55 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109890 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109890 GSM2428236 SRA503451 SRX2422282 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 56 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109891 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109891 GSM2428237 SRA503451 SRX2422283 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 57 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109892 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109892 GSM2428238 SRA503451 SRX2422284 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 58 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109893 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109893 GSM2428239 SRA503451 SRX2422285 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 59 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109894 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109894 GSM2428240 SRA503451 SRX2422286 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 60 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109895 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109895 GSM2428241 SRA503451 SRX2422287 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 61 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109896 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109896 GSM2428242 SRA503451 SRX2422288 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 62 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109897 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109897 GSM2428243 SRA503451 SRX2422289 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 63 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109898 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109898 GSM2428244 SRA503451 SRX2422290 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 64 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109899 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109899 GSM2428245 SRA503451 SRX2422291 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 65 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109900 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109900 GSM2428246 SRA503451 SRX2422292 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 66 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109901 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109901 GSM2428247 SRA503451 SRX2422293 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 67 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109902 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109902 GSM2428248 SRA503451 SRX2422294 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 68 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109903 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109903 GSM2428249 SRA503451 SRX2422295 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 69 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109904 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109904 GSM2428250 SRA503451 SRX2422296 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 70 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109905 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109905 GSM2428251 SRA503451 SRX2422297 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 71 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109906 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109906 GSM2428252 SRA503451 SRX2422298 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 72 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109907 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109907 GSM2428253 SRA503451 SRX2422299 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 73 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109908 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109908 GSM2428254 SRA503451 SRX2422300 RNA-Seq SINGLE SRP095083 PRJNA357356 92366 74 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109909 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109909 GSM2428255 SRA503451 SRX2422301 ChIP-Seq SINGLE SRP095083 PRJNA357356 92366 75 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109910 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109910 GSM2428256 SRA503451 SRX2422302 ChIP-Seq SINGLE SRP095083 PRJNA357356 92366 76 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109911 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109911 GSM2428257 SRA503451 SRX2422303 ChIP-Seq SINGLE SRP095083 PRJNA357356 92366 77 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down. 28366589 54691 SRP095083 SRR5109912 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5109912 GSM2428258 SRA503451 SRX2422304 ChIP-Seq SINGLE SRP095083 PRJNA357356 92382 1 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110206 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110206 GSM2428811 SRA503488 SRX2422594 OTHER PAIRED SRP095103 PRJNA357404 92382 2 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110207 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110207 GSM2428811 SRA503488 SRX2422594 OTHER PAIRED SRP095103 PRJNA357404 92382 3 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110208 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110208 GSM2428811 SRA503488 SRX2422594 OTHER PAIRED SRP095103 PRJNA357404 92382 4 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110209 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110209 GSM2428812 SRA503488 SRX2422595 OTHER PAIRED SRP095103 PRJNA357404 92382 5 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110210 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110210 GSM2428813 SRA503488 SRX2422596 RNA-Seq SINGLE SRP095103 PRJNA357404 92382 6 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110211 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110211 GSM2428814 SRA503488 SRX2422597 RNA-Seq SINGLE SRP095103 PRJNA357404 92382 7 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110212 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110212 GSM2428815 SRA503488 SRX2422598 ChIP-Seq SINGLE SRP095103 PRJNA357404 92382 8 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110213 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110213 GSM2428816 SRA503488 SRX2422599 ChIP-Seq SINGLE SRP095103 PRJNA357404 92382 9 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110214 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110214 GSM2428817 SRA503488 SRX2422600 ChIP-Seq SINGLE SRP095103 PRJNA357404 92382 10 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110215 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110215 GSM2428818 SRA503488 SRX2422601 ChIP-Seq SINGLE SRP095103 PRJNA357404 92382 11 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110216 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110216 GSM2428819 SRA503488 SRX2422602 ChIP-Seq SINGLE SRP095103 PRJNA357404 92382 12 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110217 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110217 GSM2428820 SRA503488 SRX2422603 ChIP-Seq SINGLE SRP095103 PRJNA357404 92382 13 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110218 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110218 GSM2428821 SRA503488 SRX2422604 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 14 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110219 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110219 GSM2428822 SRA503488 SRX2422605 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 15 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110220 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110220 GSM2428823 SRA503488 SRX2422606 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 16 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110221 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110221 GSM2428824 SRA503488 SRX2422607 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 17 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110222 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110222 GSM2428825 SRA503488 SRX2422608 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 18 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110223 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110223 GSM2428826 SRA503488 SRX2422609 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 19 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110224 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110224 GSM2428827 SRA503488 SRX2422610 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 20 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110225 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110225 GSM2428828 SRA503488 SRX2422611 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 21 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110226 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110226 GSM2428829 SRA503488 SRX2422612 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 22 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110227 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110227 GSM2428830 SRA503488 SRX2422613 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 23 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110228 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110228 GSM2428831 SRA503488 SRX2422614 ChIP-Seq PAIRED SRP095103 PRJNA357404 92382 24 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos. 29065907 54195 SRP095103 SRR5110229 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/004990/SRR5110229 GSM2428832 SRA503488 SRX2422615 ChIP-Seq PAIRED SRP095103 PRJNA357404 93195 1 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146641 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146641 GSM2446097 SRA520566 SRX2464697 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 2 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146642 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146642 GSM2446098 SRA520566 SRX2464698 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 3 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146643 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146643 GSM2446099 SRA520566 SRX2464699 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 4 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146644 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146644 GSM2446100 SRA520566 SRX2464700 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 5 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146645 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146645 GSM2446101 SRA520566 SRX2464701 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 6 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146646 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146646 GSM2446102 SRA520566 SRX2464702 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 7 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146647 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146647 GSM2446103 SRA520566 SRX2464703 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 8 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146648 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146648 GSM2446104 SRA520566 SRX2464704 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 9 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146649 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146649 GSM2446105 SRA520566 SRX2464705 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 10 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146650 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146650 GSM2446106 SRA520566 SRX2464706 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 11 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146651 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146651 GSM2446107 SRA520566 SRX2464707 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 12 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146652 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146652 GSM2446108 SRA520566 SRX2464708 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 13 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146653 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146653 GSM2446109 SRA520566 SRX2464709 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 14 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146654 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146654 GSM2446110 SRA520566 SRX2464710 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 15 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146655 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146655 GSM2446111 SRA520566 SRX2464711 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 16 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146656 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146656 GSM2446112 SRA520566 SRX2464712 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 17 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146657 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146657 GSM2446113 SRA520566 SRX2464713 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 18 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146658 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146658 GSM2446114 SRA520566 SRX2464714 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 19 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146659 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146659 GSM2446115 SRA520566 SRX2464715 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 20 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146660 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146660 GSM2446116 SRA520566 SRX2464716 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 21 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146661 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146661 GSM2446117 SRA520566 SRX2464717 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 22 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146662 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146662 GSM2446118 SRA520566 SRX2464718 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 23 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146663 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146663 GSM2446119 SRA520566 SRX2464719 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 24 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146664 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146664 GSM2446120 SRA520566 SRX2464720 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 25 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146665 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146665 GSM2446121 SRA520566 SRX2464721 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 26 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146666 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146666 GSM2446122 SRA520566 SRX2464722 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 27 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146667 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146667 GSM2446123 SRA520566 SRX2464723 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 28 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146668 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146668 GSM2446124 SRA520566 SRX2464724 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 29 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146669 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146669 GSM2446125 SRA520566 SRX2464725 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 30 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146670 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146670 GSM2446126 SRA520566 SRX2464726 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 31 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146671 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146671 GSM2446127 SRA520566 SRX2464727 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 32 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146672 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146672 GSM2446128 SRA520566 SRX2464728 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 33 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146673 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146673 GSM2446129 SRA520566 SRX2464729 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 34 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146674 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146674 GSM2446130 SRA520566 SRX2464730 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 35 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146675 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146675 GSM2446131 SRA520566 SRX2464731 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 36 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146676 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146676 GSM2446132 SRA520566 SRX2464732 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 37 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146677 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146677 GSM2446133 SRA520566 SRX2464733 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 38 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146678 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146678 GSM2446134 SRA520566 SRX2464734 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 39 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146679 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146679 GSM2446135 SRA520566 SRX2464735 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 40 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146680 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146680 GSM2446136 SRA520566 SRX2464736 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 41 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146681 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146681 GSM2446137 SRA520566 SRX2464737 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 42 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146682 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146682 GSM2446138 SRA520566 SRX2464738 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 43 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146683 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146683 GSM2446139 SRA520566 SRX2464739 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 44 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146684 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146684 GSM2446140 SRA520566 SRX2464740 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 45 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146685 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146685 GSM2446141 SRA520566 SRX2464741 RNA-Seq SINGLE SRP096124 PRJNA360282 93195 46 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 SRR5146686 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/005026/SRR5146686 GSM2446142 SRA520566 SRX2464742 RNA-Seq SINGLE SRP096124 PRJNA360282 96655 1 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346041 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346041 GSM2537311 SRA546297 SRX2642672 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 2 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346042 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346042 GSM2537312 SRA546297 SRX2642673 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 3 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346043 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346043 GSM2537313 SRA546297 SRX2642674 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 4 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346044 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346044 GSM2537314 SRA546297 SRX2642675 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 5 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346045 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346045 GSM2537315 SRA546297 SRX2642676 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 6 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346046 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346046 GSM2537316 SRA546297 SRX2642677 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 7 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346047 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346047 GSM2537317 SRA546297 SRX2642678 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 8 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346048 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346048 GSM2537318 SRA546297 SRX2642679 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 9 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346049 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346049 GSM2537319 SRA546297 SRX2642680 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 10 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346050 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346050 GSM2537320 SRA546297 SRX2642681 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 11 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346051 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346051 GSM2537321 SRA546297 SRX2642682 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 12 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346052 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346052 GSM2537322 SRA546297 SRX2642683 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 13 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346053 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346053 GSM2537323 SRA546297 SRX2642684 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 14 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346054 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346054 GSM2537324 SRA546297 SRX2642685 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 15 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346055 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346055 GSM2537325 SRA546297 SRX2642686 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 16 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346056 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346056 GSM2537326 SRA546297 SRX2642687 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 17 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346057 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346057 GSM2537327 SRA546297 SRX2642688 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 18 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346058 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346058 GSM2537328 SRA546297 SRX2642689 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 19 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346059 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346059 GSM2537329 SRA546297 SRX2642690 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 20 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346060 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346060 GSM2537330 SRA546297 SRX2642691 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 21 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346061 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346061 GSM2537331 SRA546297 SRX2642692 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 22 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346062 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346062 GSM2537332 SRA546297 SRX2642693 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 23 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346063 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346063 GSM2537333 SRA546297 SRX2642694 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 24 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346064 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346064 GSM2537334 SRA546297 SRX2642695 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 25 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346065 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346065 GSM2537335 SRA546297 SRX2642696 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 26 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346066 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346066 GSM2537336 SRA546297 SRX2642697 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 27 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346067 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346067 GSM2537337 SRA546297 SRX2642698 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 28 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346068 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346068 GSM2537338 SRA546297 SRX2642699 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 29 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346069 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346069 GSM2537339 SRA546297 SRX2642700 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 30 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346070 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346070 GSM2537340 SRA546297 SRX2642701 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 31 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346071 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346071 GSM2537341 SRA546297 SRX2642702 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 32 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346072 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346072 GSM2537342 SRA546297 SRX2642703 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 33 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346073 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346073 GSM2537343 SRA546297 SRX2642704 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 34 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346074 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346074 GSM2537344 SRA546297 SRX2642705 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 35 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346075 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346075 GSM2537345 SRA546297 SRX2642706 RNA-Seq PAIRED SRP101960 PRJNA379304 96655 36 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 SRR5346076 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/005220/SRR5346076 GSM2537346 SRA546297 SRX2642707 RNA-Seq PAIRED SRP101960 PRJNA379304 97367 1 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5508303 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5508303/SRR5508303.1 Anolis_Female_genome SRA559581 SRX2783975 WGS PAIRED SRP102989 PRJNA381064 97367 2 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5508304 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5508304/SRR5508304.1 Anolis_Male_genome SRA559581 SRX2783976 WGS PAIRED SRP102989 PRJNA381064 97367 3 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412266 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412266/SRR5412266.1 GSM2563127 SRA551247 SRX2704314 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 4 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412267 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412267/SRR5412267.1 GSM2563128 SRA551247 SRX2704315 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 5 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412268 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412268/SRR5412268.1 GSM2563129 SRA551247 SRX2704316 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 6 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412269 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412269/SRR5412269.1 GSM2563130 SRA551247 SRX2704317 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 7 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412270 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412270/SRR5412270.1 GSM2563131 SRA551247 SRX2704318 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 8 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412271 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412271/SRR5412271.1 GSM2563132 SRA551247 SRX2704319 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 9 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412272 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412272/SRR5412272.1 GSM2563133 SRA551247 SRX2704320 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 10 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412273 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412273/SRR5412273.1 GSM2563134 SRA551247 SRX2704321 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 11 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412274 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412274/SRR5412274.1 GSM2563135 SRA551247 SRX2704322 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 12 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412275 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412275/SRR5412275.1 GSM2563136 SRA551247 SRX2704323 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 13 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412276 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412276/SRR5412276.1 GSM2563137 SRA551247 SRX2704324 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 14 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412277 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412277/SRR5412277.1 GSM2563138 SRA551247 SRX2704325 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 15 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412278 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412278/SRR5412278.1 GSM2563139 SRA551247 SRX2704326 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 16 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412279 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412279/SRR5412279.1 GSM2563140 SRA551247 SRX2704327 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 17 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412280 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412280/SRR5412280.1 GSM2563141 SRA551247 SRX2704328 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 18 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514366 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514366/SRR5514366.1 GSM2601715 SRA551247 SRX2787757 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 19 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514367 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514367/SRR5514367.1 GSM2601716 SRA551247 SRX2787758 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 20 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514368 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514368/SRR5514368.1 GSM2601717 SRA551247 SRX2787759 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 21 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514369 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514369/SRR5514369.1 GSM2601718 SRA551247 SRX2787760 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 22 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514370 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514370/SRR5514370.1 GSM2601719 SRA551247 SRX2787761 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 23 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514371 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514371/SRR5514371.1 GSM2601720 SRA551247 SRX2787762 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 24 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514372 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514372/SRR5514372.1 GSM2601721 SRA551247 SRX2787763 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 25 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514373 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514373/SRR5514373.1 GSM2601722 SRA551247 SRX2787764 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 26 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514374 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514374/SRR5514374.1 GSM2601723 SRA551247 SRX2787765 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 27 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514375 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514375/SRR5514375.1 GSM2601724 SRA551247 SRX2787766 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 28 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514376 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514376/SRR5514376.1 GSM2601725 SRA551247 SRX2787767 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 29 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5514377 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5514377/SRR5514377.1 GSM2601726 SRA551247 SRX2787768 ChIP-Seq PAIRED SRP102989 PRJNA381064 97367 30 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5813770 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR5813770/SRR5813770.1 GSM2698413 SRA585166 SRX2992263 OTHER PAIRED SRP102989 PRJNA381064 97367 31 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5813771 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR5813771/SRR5813771.1 GSM2698414 SRA585166 SRX2992264 OTHER PAIRED SRP102989 PRJNA381064 97367 32 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5813772 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR5813772/SRR5813772.1 GSM2698415 SRA585166 SRX2992265 OTHER PAIRED SRP102989 PRJNA381064 97367 33 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5813773 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR5813773/SRR5813773.1 GSM2698416 SRA585166 SRX2992266 OTHER PAIRED SRP102989 PRJNA381064 97367 34 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5813774 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR5813774/SRR5813774.1 GSM2698417 SRA585166 SRX2992267 OTHER PAIRED SRP102989 PRJNA381064 97367 35 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5813775 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR5813775/SRR5813775.1 GSM2698418 SRA585166 SRX2992268 OTHER PAIRED SRP102989 PRJNA381064 97367 36 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5813776 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR5813776/SRR5813776.1 GSM2698419 SRA585166 SRX2992269 OTHER PAIRED SRP102989 PRJNA381064 97367 37 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261399 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261399/SRR6261399.1 GSM2843033 SRA551247 SRX3367730 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 38 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261400 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261400/SRR6261400.1 GSM2843034 SRA551247 SRX3367731 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 39 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261401 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261401/SRR6261401.1 GSM2843035 SRA551247 SRX3367732 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 40 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261402 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261402/SRR6261402.1 GSM2843036 SRA551247 SRX3367733 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 41 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261403 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261403/SRR6261403.1 GSM2843037 SRA551247 SRX3367734 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 42 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261404 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261404/SRR6261404.1 GSM2843038 SRA551247 SRX3367735 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 43 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261405 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261405/SRR6261405.1 GSM2843039 SRA551247 SRX3367736 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 44 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261406 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261406/SRR6261406.1 GSM2843040 SRA551247 SRX3367737 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 45 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261407 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261407/SRR6261407.1 GSM2843041 SRA551247 SRX3367738 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 46 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261408 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261408/SRR6261408.1 GSM2843042 SRA551247 SRX3367739 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 47 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261409 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261409/SRR6261409.1 GSM2843043 SRA551247 SRX3367740 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 48 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261410 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261410/SRR6261410.1 GSM2843044 SRA551247 SRX3367741 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 49 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261411 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261411/SRR6261411.1 GSM2843045 SRA551247 SRX3367742 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 50 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261412 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261412/SRR6261412.1 GSM2843046 SRA551247 SRX3367743 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 51 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261413 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261413/SRR6261413.1 GSM2843047 SRA551247 SRX3367744 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 52 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261414 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261414/SRR6261414.1 GSM2843048 SRA551247 SRX3367745 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 53 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261415 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261415/SRR6261415.1 GSM2843049 SRA551247 SRX3367746 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 54 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261416 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261416/SRR6261416.1 GSM2843050 SRA551247 SRX3367747 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 55 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261417 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261417/SRR6261417.1 GSM2843051 SRA551247 SRX3367748 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 56 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261418 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261418/SRR6261418.1 GSM2843052 SRA551247 SRX3367749 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 57 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261419 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261419/SRR6261419.1 GSM2843053 SRA551247 SRX3367750 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 58 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261420 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261420/SRR6261420.1 GSM2843054 SRA551247 SRX3367751 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 59 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261421 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261421/SRR6261421.1 GSM2843055 SRA551247 SRX3367752 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 60 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261422 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261422/SRR6261422.1 GSM2843056 SRA551247 SRX3367753 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 61 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261423 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261423/SRR6261423.1 GSM2843057 SRA551247 SRX3367754 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 62 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261424 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261424/SRR6261424.1 GSM2843058 SRA551247 SRX3367755 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 63 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261425 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261425/SRR6261425.1 GSM2843059 SRA551247 SRX3367756 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 64 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261426 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261426/SRR6261426.1 GSM2843060 SRA551247 SRX3367757 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 65 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261427 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261427/SRR6261427.1 GSM2843061 SRA551247 SRX3367758 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 66 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261428 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261428/SRR6261428.1 GSM2843062 SRA551247 SRX3367759 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 67 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261429 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261429/SRR6261429.1 GSM2843063 SRA551247 SRX3367760 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 68 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261430 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261430/SRR6261430.1 GSM2843064 SRA551247 SRX3367761 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 69 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261431 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261431/SRR6261431.1 GSM2843065 SRA551247 SRX3367762 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 70 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261432 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261432/SRR6261432.1 GSM2843066 SRA551247 SRX3367763 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 71 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261433 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261433/SRR6261433.1 GSM2843067 SRA551247 SRX3367764 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 72 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261434 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261434/SRR6261434.1 GSM2843068 SRA551247 SRX3367765 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 73 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261435 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261435/SRR6261435.1 GSM2843069 SRA551247 SRX3367766 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 74 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261436 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261436/SRR6261436.1 GSM2843070 SRA551247 SRX3367767 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 75 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261437 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261437/SRR6261437.1 GSM2843071 SRA551247 SRX3367768 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 76 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261438 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261438/SRR6261438.1 GSM2843072 SRA551247 SRX3367769 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 77 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261439 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261439/SRR6261439.1 GSM2843073 SRA551247 SRX3367770 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 78 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261440 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261440/SRR6261440.1 GSM2843074 SRA551247 SRX3367771 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 79 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261441 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261441/SRR6261441.1 GSM2843075 SRA551247 SRX3367772 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 80 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261442 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261442/SRR6261442.1 GSM2843076 SRA551247 SRX3367773 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 81 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261443 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261443/SRR6261443.1 GSM2843077 SRA551247 SRX3367774 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 82 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261444 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261444/SRR6261444.1 GSM2843078 SRA551247 SRX3367775 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 83 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261445 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261445/SRR6261445.1 GSM2843079 SRA551247 SRX3367776 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 84 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6261446 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR6261446/SRR6261446.1 GSM2843080 SRA551247 SRX3367777 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 85 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337910 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337910/SRR6337910.1 GSM2871941 SRA635532 SRX3436872 OTHER PAIRED SRP102989 PRJNA381064 97367 86 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337911 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337911/SRR6337911.1 GSM2871942 SRA635532 SRX3436873 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 87 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337912 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337912/SRR6337912.1 GSM2871943 SRA635532 SRX3436874 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 88 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337913 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337913/SRR6337913.1 GSM2871944 SRA635532 SRX3436875 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 89 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337914 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337914/SRR6337914.1 GSM2871945 SRA635532 SRX3436876 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 90 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337915 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337915/SRR6337915.1 GSM2871946 SRA635532 SRX3436877 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 91 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337916 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337916/SRR6337916.1 GSM2871947 SRA635532 SRX3436878 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 92 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337917 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337917/SRR6337917.1 GSM2871948 SRA635532 SRX3436879 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 93 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337918 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337918/SRR6337918.1 GSM2871949 SRA635532 SRX3436880 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 94 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337919 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337919/SRR6337919.1 GSM2871950 SRA635532 SRX3436881 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 95 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337920 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337920/SRR6337920.1 GSM2871951 SRA635532 SRX3436882 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 96 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337921 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337921/SRR6337921.1 GSM2871952 SRA635532 SRX3436883 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 97 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337922 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337922/SRR6337922.1 GSM2871953 SRA635532 SRX3436884 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 98 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337923 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337923/SRR6337923.1 GSM2871954 SRA635532 SRX3436885 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 99 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR6337924 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-11/SRR6337924/SRR6337924.1 GSM2871955 SRA635532 SRX3436886 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 100 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5508305 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5508305/SRR5508305.1 Iguana_Male_genome SRA559581 SRX2783977 WGS PAIRED SRP102989 PRJNA381064 97367 101 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412166 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412166/SRR5412166.1 GSM2563027 SRA551247 SRX2704214 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 102 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412167 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412167/SRR5412167.1 GSM2563028 SRA551247 SRX2704215 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 103 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412168 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412168/SRR5412168.1 GSM2563029 SRA551247 SRX2704216 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 104 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412169 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412169/SRR5412169.1 GSM2563030 SRA551247 SRX2704217 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 105 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412170 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412170/SRR5412170.1 GSM2563031 SRA551247 SRX2704218 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 106 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412171 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412171/SRR5412171.1 GSM2563032 SRA551247 SRX2704219 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 107 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412172 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412172/SRR5412172.1 GSM2563033 SRA551247 SRX2704220 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 108 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412173 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412173/SRR5412173.1 GSM2563034 SRA551247 SRX2704221 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 109 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412174 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412174/SRR5412174.1 GSM2563035 SRA551247 SRX2704222 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 110 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412175 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412175/SRR5412175.1 GSM2563036 SRA551247 SRX2704223 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 111 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412176 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412176/SRR5412176.1 GSM2563037 SRA551247 SRX2704224 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 112 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412177 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412177/SRR5412177.1 GSM2563038 SRA551247 SRX2704225 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 113 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412178 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412178/SRR5412178.1 GSM2563039 SRA551247 SRX2704226 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 114 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412179 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412179/SRR5412179.1 GSM2563040 SRA551247 SRX2704227 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 115 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412180 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412180/SRR5412180.1 GSM2563041 SRA551247 SRX2704228 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 116 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412181 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412181/SRR5412181.1 GSM2563042 SRA551247 SRX2704229 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 117 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412182 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412182/SRR5412182.1 GSM2563043 SRA551247 SRX2704230 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 118 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412183 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412183/SRR5412183.1 GSM2563044 SRA551247 SRX2704231 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 119 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412184 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412184/SRR5412184.1 GSM2563045 SRA551247 SRX2704232 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 120 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412185 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412185/SRR5412185.1 GSM2563046 SRA551247 SRX2704233 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 121 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412186 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412186/SRR5412186.1 GSM2563047 SRA551247 SRX2704234 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 122 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412187 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412187/SRR5412187.1 GSM2563048 SRA551247 SRX2704235 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 123 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412188 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412188/SRR5412188.1 GSM2563049 SRA551247 SRX2704236 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 124 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412189 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412189/SRR5412189.1 GSM2563050 SRA551247 SRX2704237 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 125 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412190 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412190/SRR5412190.1 GSM2563051 SRA551247 SRX2704238 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 126 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412191 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412191/SRR5412191.1 GSM2563052 SRA551247 SRX2704239 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 127 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412192 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412192/SRR5412192.1 GSM2563053 SRA551247 SRX2704240 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 128 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412193 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412193/SRR5412193.1 GSM2563054 SRA551247 SRX2704241 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 129 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412194 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412194/SRR5412194.1 GSM2563055 SRA551247 SRX2704242 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 130 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412195 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412195/SRR5412195.1 GSM2563056 SRA551247 SRX2704243 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 131 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412196 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412196/SRR5412196.1 GSM2563057 SRA551247 SRX2704244 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 132 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412197 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412197/SRR5412197.1 GSM2563058 SRA551247 SRX2704245 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 133 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412198 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412198/SRR5412198.1 GSM2563059 SRA551247 SRX2704246 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 134 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412199 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412199/SRR5412199.1 GSM2563060 SRA551247 SRX2704247 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 135 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412200 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412200/SRR5412200.1 GSM2563061 SRA551247 SRX2704248 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 136 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412201 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412201/SRR5412201.1 GSM2563062 SRA551247 SRX2704249 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 137 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412202 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412202/SRR5412202.1 GSM2563063 SRA551247 SRX2704250 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 138 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412203 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412203/SRR5412203.1 GSM2563064 SRA551247 SRX2704251 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 139 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412204 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412204/SRR5412204.1 GSM2563065 SRA551247 SRX2704252 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 140 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412205 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412205/SRR5412205.1 GSM2563066 SRA551247 SRX2704253 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 141 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412206 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412206/SRR5412206.1 GSM2563067 SRA551247 SRX2704254 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 142 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412207 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412207/SRR5412207.1 GSM2563068 SRA551247 SRX2704255 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 143 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412208 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412208/SRR5412208.1 GSM2563069 SRA551247 SRX2704256 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 144 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412209 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412209/SRR5412209.1 GSM2563070 SRA551247 SRX2704257 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 145 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412210 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412210/SRR5412210.1 GSM2563071 SRA551247 SRX2704258 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 146 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412211 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412211/SRR5412211.1 GSM2563072 SRA551247 SRX2704259 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 147 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412212 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412212/SRR5412212.1 GSM2563073 SRA551247 SRX2704260 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 148 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412213 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412213/SRR5412213.1 GSM2563074 SRA551247 SRX2704261 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 149 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412214 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412214/SRR5412214.1 GSM2563075 SRA551247 SRX2704262 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 150 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412215 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412215/SRR5412215.1 GSM2563076 SRA551247 SRX2704263 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 151 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412216 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412216/SRR5412216.1 GSM2563077 SRA551247 SRX2704264 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 152 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412217 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412217/SRR5412217.1 GSM2563078 SRA551247 SRX2704265 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 153 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412218 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412218/SRR5412218.1 GSM2563079 SRA551247 SRX2704266 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 154 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412219 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412219/SRR5412219.1 GSM2563080 SRA551247 SRX2704267 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 155 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412220 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412220/SRR5412220.1 GSM2563081 SRA551247 SRX2704268 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 156 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412221 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412221/SRR5412221.1 GSM2563082 SRA551247 SRX2704269 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 157 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412222 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412222/SRR5412222.1 GSM2563083 SRA551247 SRX2704270 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 158 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412223 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412223/SRR5412223.1 GSM2563084 SRA551247 SRX2704271 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 159 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412224 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412224/SRR5412224.1 GSM2563085 SRA551247 SRX2704272 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 160 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412225 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412225/SRR5412225.1 GSM2563086 SRA551247 SRX2704273 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 161 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412226 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412226/SRR5412226.1 GSM2563087 SRA551247 SRX2704274 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 162 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412227 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412227/SRR5412227.1 GSM2563088 SRA551247 SRX2704275 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 163 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412228 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412228/SRR5412228.1 GSM2563089 SRA551247 SRX2704276 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 164 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412229 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412229/SRR5412229.1 GSM2563090 SRA551247 SRX2704277 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 165 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412230 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412230/SRR5412230.1 GSM2563091 SRA551247 SRX2704278 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 166 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412231 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412231/SRR5412231.1 GSM2563092 SRA551247 SRX2704279 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 167 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412232 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412232/SRR5412232.1 GSM2563093 SRA551247 SRX2704280 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 168 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412233 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412233/SRR5412233.1 GSM2563094 SRA551247 SRX2704281 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 169 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412234 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412234/SRR5412234.1 GSM2563095 SRA551247 SRX2704282 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 170 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412235 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412235/SRR5412235.1 GSM2563096 SRA551247 SRX2704283 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 171 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412236 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412236/SRR5412236.1 GSM2563097 SRA551247 SRX2704284 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 172 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412237 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412237/SRR5412237.1 GSM2563098 SRA551247 SRX2704285 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 173 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412238 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412238/SRR5412238.1 GSM2563099 SRA551247 SRX2704286 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 174 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412239 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412239/SRR5412239.1 GSM2563100 SRA551247 SRX2704287 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 175 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412240 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412240/SRR5412240.1 GSM2563101 SRA551247 SRX2704288 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 176 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412241 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412241/SRR5412241.1 GSM2563102 SRA551247 SRX2704289 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 177 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412242 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412242/SRR5412242.1 GSM2563103 SRA551247 SRX2704290 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 178 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412243 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412243/SRR5412243.1 GSM2563104 SRA551247 SRX2704291 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 179 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412244 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412244/SRR5412244.1 GSM2563105 SRA551247 SRX2704292 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 180 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412245 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412245/SRR5412245.1 GSM2563106 SRA551247 SRX2704293 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 181 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412246 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412246/SRR5412246.1 GSM2563107 SRA551247 SRX2704294 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 182 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412247 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412247/SRR5412247.1 GSM2563108 SRA551247 SRX2704295 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 183 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412248 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412248/SRR5412248.1 GSM2563109 SRA551247 SRX2704296 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 184 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412249 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412249/SRR5412249.1 GSM2563110 SRA551247 SRX2704297 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 185 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412250 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412250/SRR5412250.1 GSM2563111 SRA551247 SRX2704298 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 186 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412251 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412251/SRR5412251.1 GSM2563112 SRA551247 SRX2704299 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 187 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412252 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412252/SRR5412252.1 GSM2563113 SRA551247 SRX2704300 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 188 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412253 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412253/SRR5412253.1 GSM2563114 SRA551247 SRX2704301 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 189 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412254 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412254/SRR5412254.1 GSM2563115 SRA551247 SRX2704302 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 190 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412255 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412255/SRR5412255.1 GSM2563116 SRA551247 SRX2704303 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 191 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412256 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412256/SRR5412256.1 GSM2563117 SRA551247 SRX2704304 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 192 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412257 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412257/SRR5412257.1 GSM2563118 SRA551247 SRX2704305 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 193 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412258 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412258/SRR5412258.1 GSM2563119 SRA551247 SRX2704306 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 194 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412259 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412259/SRR5412259.1 GSM2563120 SRA551247 SRX2704307 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 195 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412260 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412260/SRR5412260.1 GSM2563121 SRA551247 SRX2704308 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 196 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412261 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412261/SRR5412261.1 GSM2563122 SRA551247 SRX2704309 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 197 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412262 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412262/SRR5412262.1 GSM2563123 SRA551247 SRX2704310 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 198 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412263 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412263/SRR5412263.1 GSM2563124 SRA551247 SRX2704311 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 199 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412264 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412264/SRR5412264.1 GSM2563125 SRA551247 SRX2704312 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 200 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412265 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412265/SRR5412265.1 GSM2563126 SRA551247 SRX2704313 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 201 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412144 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412144/SRR5412144.1 GSM2563005 SRA551247 SRX2704192 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 202 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412145 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412145/SRR5412145.1 GSM2563006 SRA551247 SRX2704193 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 203 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412146 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412146/SRR5412146.1 GSM2563007 SRA551247 SRX2704194 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 204 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412147 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412147/SRR5412147.1 GSM2563008 SRA551247 SRX2704195 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 205 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412148 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412148/SRR5412148.1 GSM2563009 SRA551247 SRX2704196 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 206 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412149 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412149/SRR5412149.1 GSM2563010 SRA551247 SRX2704197 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 207 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412150 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412150/SRR5412150.1 GSM2563011 SRA551247 SRX2704198 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 208 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412151 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412151/SRR5412151.1 GSM2563012 SRA551247 SRX2704199 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 209 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412152 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412152/SRR5412152.1 GSM2563013 SRA551247 SRX2704200 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 210 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412153 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412153/SRR5412153.1 GSM2563014 SRA551247 SRX2704201 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 211 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412154 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412154/SRR5412154.1 GSM2563015 SRA551247 SRX2704202 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 212 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412155 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412155/SRR5412155.1 GSM2563016 SRA551247 SRX2704203 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 213 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412156 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412156/SRR5412156.1 GSM2563017 SRA551247 SRX2704204 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 214 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412157 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412157/SRR5412157.1 GSM2563018 SRA551247 SRX2704205 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 215 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412158 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412158/SRR5412158.1 GSM2563019 SRA551247 SRX2704206 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 216 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412159 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412159/SRR5412159.1 GSM2563020 SRA551247 SRX2704207 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 217 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412160 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412160/SRR5412160.1 GSM2563021 SRA551247 SRX2704208 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 218 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412161 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412161/SRR5412161.1 GSM2563022 SRA551247 SRX2704209 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 219 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412162 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412162/SRR5412162.1 GSM2563023 SRA551247 SRX2704210 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 220 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412163 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412163/SRR5412163.1 GSM2563024 SRA551247 SRX2704211 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 221 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412164 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412164/SRR5412164.1 GSM2563025 SRA551247 SRX2704212 RNA-Seq SINGLE SRP102989 PRJNA381064 97367 222 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes. 0 56019 SRP102989 SRR5412165 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-7/SRR5412165/SRR5412165.1 GSM2563026 SRA551247 SRX2704213 RNA-Seq SINGLE SRP102989 PRJNA381064 100434 1 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 SRR5753209 https://sra-download.ncbi.nlm.nih.gov/traces/sra49/SRR/005618/SRR5753209 GSM2683080 SRA580653 SRX2953428 miRNA-Seq SINGLE SRP110298 PRJNA391724 100434 2 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 SRR5753210 https://sra-download.ncbi.nlm.nih.gov/traces/sra49/SRR/005618/SRR5753210 GSM2683081 SRA580653 SRX2953429 miRNA-Seq SINGLE SRP110298 PRJNA391724 100434 3 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 SRR5753211 https://sra-download.ncbi.nlm.nih.gov/traces/sra49/SRR/005618/SRR5753211 GSM2683082 SRA580653 SRX2953430 miRNA-Seq SINGLE SRP110298 PRJNA391724 102047 1 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development. 29158442 54309 SRP114372 SRR5883382 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/005745/SRR5883382 GSM2722410 SRA594757 SRX3049471 RNA-Seq PAIRED SRP114372 PRJNA396491 102047 2 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development. 29158442 54309 SRP114372 SRR5883383 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/005745/SRR5883383 GSM2722411 SRA594757 SRX3049472 RNA-Seq PAIRED SRP114372 PRJNA396491 102047 3 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development. 29158442 54309 SRP114372 SRR5883384 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/005745/SRR5883384 GSM2722412 SRA594757 SRX3049473 RNA-Seq PAIRED SRP114372 PRJNA396491 102047 4 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development. 29158442 54309 SRP114372 SRR5883385 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/005745/SRR5883385 GSM2722413 SRA594757 SRX3049474 RNA-Seq PAIRED SRP114372 PRJNA396491 102047 5 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development. 29158442 54309 SRP114372 SRR5883386 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/005745/SRR5883386 GSM2722414 SRA594757 SRX3049475 RNA-Seq PAIRED SRP114372 PRJNA396491 102047 6 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development. 29158442 54309 SRP114372 SRR5883387 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/005745/SRR5883387 GSM2722415 SRA594757 SRX3049476 RNA-Seq PAIRED SRP114372 PRJNA396491 103240 1 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988444 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988444 GSM2758809 SRA603666 SRX3144219 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 2 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988445 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988445 GSM2758810 SRA603666 SRX3144220 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 3 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988446 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988446 GSM2758811 SRA603666 SRX3144221 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 4 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988447 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988447 GSM2758812 SRA603666 SRX3144222 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 5 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988448 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988448 GSM2758813 SRA603666 SRX3144223 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 6 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988449 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988449 GSM2758814 SRA603666 SRX3144224 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 7 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988450 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988450 GSM2758815 SRA603666 SRX3144225 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 8 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988451 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988451 GSM2758816 SRA603666 SRX3144226 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 9 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988452 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988452 GSM2758817 SRA603666 SRX3144227 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 10 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988453 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988453 GSM2758818 SRA603666 SRX3144228 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 11 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988454 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988454 GSM2758819 SRA603666 SRX3144229 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 12 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988455 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988455 GSM2758820 SRA603666 SRX3144230 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 13 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988456 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988456 GSM2758821 SRA603666 SRX3144231 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 14 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988457 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988457 GSM2758822 SRA603666 SRX3144232 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 15 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988458 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988458 GSM2758823 SRA603666 SRX3144233 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 16 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988459 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988459 GSM2758824 SRA603666 SRX3144234 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 17 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988460 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988460 GSM2758825 SRA603666 SRX3144235 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 18 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988461 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988461 GSM2758826 SRA603666 SRX3144236 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 19 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988462 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988462 GSM2758827 SRA603666 SRX3144237 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 20 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988463 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988463 GSM2758828 SRA603666 SRX3144238 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 21 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988464 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988464 GSM2758829 SRA603666 SRX3144239 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 22 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988465 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988465 GSM2758830 SRA603666 SRX3144240 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 23 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988466 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988466 GSM2758831 SRA603666 SRX3144241 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 24 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988467 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988467 GSM2758832 SRA603666 SRX3144242 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 25 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988468 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988468 GSM2758833 SRA603666 SRX3144243 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 26 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988469 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988469 GSM2758834 SRA603666 SRX3144244 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 27 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988470 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988470 GSM2758835 SRA603666 SRX3144245 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 28 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988471 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988471 GSM2758836 SRA603666 SRX3144246 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 29 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988472 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988472 GSM2758837 SRA603666 SRX3144247 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 30 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988473 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988473 GSM2758838 SRA603666 SRX3144248 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 31 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988474 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988474 GSM2758839 SRA603666 SRX3144249 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 32 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988475 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988475 GSM2758840 SRA603666 SRX3144250 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 33 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988476 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988476 GSM2758841 SRA603666 SRX3144251 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 34 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988477 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988477 GSM2758842 SRA603666 SRX3144252 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 35 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988478 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988478 GSM2758843 SRA603666 SRX3144253 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 36 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988479 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988479 GSM2758844 SRA603666 SRX3144254 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 37 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988480 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988480 GSM2758845 SRA603666 SRX3144255 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 38 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988481 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988481 GSM2758846 SRA603666 SRX3144256 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 39 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988482 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988482 GSM2758847 SRA603666 SRX3144257 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 40 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988483 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988483 GSM2758848 SRA603666 SRX3144258 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 41 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988484 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988484 GSM2758849 SRA603666 SRX3144259 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 42 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988485 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988485 GSM2758850 SRA603666 SRX3144260 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 43 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988486 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988486 GSM2758851 SRA603666 SRX3144261 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 44 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988487 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988487 GSM2758852 SRA603666 SRX3144262 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 45 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988488 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988488 GSM2758853 SRA603666 SRX3144263 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 46 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988489 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988489 GSM2758854 SRA603666 SRX3144264 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 47 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988490 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988490 GSM2758855 SRA603666 SRX3144265 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 48 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988491 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988491 GSM2758856 SRA603666 SRX3144266 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 49 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988492 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988492 GSM2758857 SRA603666 SRX3144267 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 50 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988493 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988493 GSM2758858 SRA603666 SRX3144268 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 51 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988494 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988494 GSM2758859 SRA603666 SRX3144269 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 52 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988495 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988495 GSM2758860 SRA603666 SRX3144270 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 53 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988496 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988496 GSM2758861 SRA603666 SRX3144271 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 54 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988497 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988497 GSM2758862 SRA603666 SRX3144272 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 55 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988498 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988498 GSM2758863 SRA603666 SRX3144273 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 56 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988499 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988499 GSM2758864 SRA603666 SRX3144274 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 57 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988500 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988500 GSM2758865 SRA603666 SRX3144275 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 58 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988501 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988501 GSM2758866 SRA603666 SRX3144276 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 59 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988502 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988502 GSM2758867 SRA603666 SRX3144277 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 60 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988503 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988503 GSM2758868 SRA603666 SRX3144278 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 61 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988504 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988504 GSM2758869 SRA603666 SRX3144279 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 62 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988505 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988505 GSM2758870 SRA603666 SRX3144280 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 63 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988506 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988506 GSM2758871 SRA603666 SRX3144281 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 64 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988507 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988507 GSM2758872 SRA603666 SRX3144282 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 65 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988508 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988508 GSM2758873 SRA603666 SRX3144283 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 66 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988509 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988509 GSM2758874 SRA603666 SRX3144284 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 67 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988510 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988510 GSM2758875 SRA603666 SRX3144285 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 68 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988511 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988511 GSM2758876 SRA603666 SRX3144286 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 69 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988512 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988512 GSM2758877 SRA603666 SRX3144287 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 70 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988513 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988513 GSM2758878 SRA603666 SRX3144288 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 71 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988514 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988514 GSM2758879 SRA603666 SRX3144289 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 72 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988515 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988515 GSM2758880 SRA603666 SRX3144290 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 73 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988516 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988516 GSM2758881 SRA603666 SRX3144291 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 74 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988517 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988517 GSM2758882 SRA603666 SRX3144292 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 75 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988518 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988518 GSM2758883 SRA603666 SRX3144293 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 76 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988519 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988519 GSM2758884 SRA603666 SRX3144294 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 77 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988520 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988520 GSM2758885 SRA603666 SRX3144295 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 78 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988521 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988521 GSM2758886 SRA603666 SRX3144296 RNA-Seq PAIRED SRP116397 PRJNA400602 103240 79 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000 29049289 54144 SRP116397 SRR5988522 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/005848/SRR5988522 GSM2758887 SRA603666 SRX3144297 RNA-Seq PAIRED SRP116397 PRJNA400602 104848 1 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160922 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160922 GSM2808768 SRA618931 SRX3272460 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 2 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160923 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160923 GSM2808769 SRA618931 SRX3272461 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 3 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160924 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160924 GSM2808770 SRA618931 SRX3272462 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 4 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160925 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160925 GSM2808771 SRA618931 SRX3272463 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 5 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160926 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160926 GSM2808772 SRA618931 SRX3272464 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 6 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160927 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160927 GSM2808773 SRA618931 SRX3272465 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 7 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160928 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160928 GSM2808774 SRA618931 SRX3272466 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 8 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160929 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160929 GSM2808775 SRA618931 SRX3272467 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 9 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160930 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160930 GSM2808776 SRA618931 SRX3272468 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 10 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160931 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160931 GSM2808777 SRA618931 SRX3272469 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 11 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160932 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160932 GSM2808778 SRA618931 SRX3272470 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 12 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160933 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160933 GSM2808779 SRA618931 SRX3272471 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 13 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160934 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160934 GSM2808780 SRA618931 SRX3272472 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 14 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160935 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160935 GSM2808781 SRA618931 SRX3272473 RNA-Seq PAIRED SRP119791 PRJNA413987 104848 15 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq. 29844480 54969 SRP119791 SRR6160936 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006016/SRR6160936 GSM2808782 SRA618931 SRX3272474 RNA-Seq PAIRED SRP119791 PRJNA413987 106157 1 Taejoon Kwon Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus Hybridization of eggs and sperm from closely related species can give rise to genetic diversity, or can lead to embryo inviability due to incompatibil Taejoon Kwon, Romain Gibeaux, Rachael Acker, Maiko Kitaoka, Georgios Georgiou, Ilavan Kruijsbergen, Breanna Ford, Edward Marcotte, Daniel Nomura, GertJan Veenstra, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 29320479 54448 SRP121460 SRR6216948 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006071/SRR6216948 GSM2830578 SRA624598 SRX3325611 RNA-Seq PAIRED SRP121460 PRJNA415788 106157 2 Taejoon Kwon Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus Hybridization of eggs and sperm from closely related species can give rise to genetic diversity, or can lead to embryo inviability due to incompatibil Taejoon Kwon, Romain Gibeaux, Rachael Acker, Maiko Kitaoka, Georgios Georgiou, Ilavan Kruijsbergen, Breanna Ford, Edward Marcotte, Daniel Nomura, GertJan Veenstra, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 29320479 54448 SRP121460 SRR6216949 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006071/SRR6216949 GSM2830579 SRA624598 SRX3325612 RNA-Seq PAIRED SRP121460 PRJNA415788 106157 3 Taejoon Kwon Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus Hybridization of eggs and sperm from closely related species can give rise to genetic diversity, or can lead to embryo inviability due to incompatibil Taejoon Kwon, Romain Gibeaux, Rachael Acker, Maiko Kitaoka, Georgios Georgiou, Ilavan Kruijsbergen, Breanna Ford, Edward Marcotte, Daniel Nomura, GertJan Veenstra, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 29320479 54448 SRP121460 SRR6216950 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006071/SRR6216950 GSM2830580 SRA624598 SRX3325613 RNA-Seq PAIRED SRP121460 PRJNA415788 106157 4 Taejoon Kwon Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus Hybridization of eggs and sperm from closely related species can give rise to genetic diversity, or can lead to embryo inviability due to incompatibil Taejoon Kwon, Romain Gibeaux, Rachael Acker, Maiko Kitaoka, Georgios Georgiou, Ilavan Kruijsbergen, Breanna Ford, Edward Marcotte, Daniel Nomura, GertJan Veenstra, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 29320479 54448 SRP121460 SRR6216951 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006071/SRR6216951 GSM2830581 SRA624598 SRX3325614 RNA-Seq PAIRED SRP121460 PRJNA415788 106157 5 Taejoon Kwon Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus Hybridization of eggs and sperm from closely related species can give rise to genetic diversity, or can lead to embryo inviability due to incompatibil Taejoon Kwon, Romain Gibeaux, Rachael Acker, Maiko Kitaoka, Georgios Georgiou, Ilavan Kruijsbergen, Breanna Ford, Edward Marcotte, Daniel Nomura, GertJan Veenstra, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 29320479 54448 SRP121460 SRR6216952 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006071/SRR6216952 GSM2830582 SRA624598 SRX3325615 RNA-Seq PAIRED SRP121460 PRJNA415788 106157 6 Taejoon Kwon Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus Hybridization of eggs and sperm from closely related species can give rise to genetic diversity, or can lead to embryo inviability due to incompatibil Taejoon Kwon, Romain Gibeaux, Rachael Acker, Maiko Kitaoka, Georgios Georgiou, Ilavan Kruijsbergen, Breanna Ford, Edward Marcotte, Daniel Nomura, GertJan Veenstra, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 29320479 54448 SRP121460 SRR6216953 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006071/SRR6216953 GSM2830583 SRA624598 SRX3325616 RNA-Seq PAIRED SRP121460 PRJNA415788 106320 1 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234315 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234315 GSM2835917 SRA626226 SRX3342727 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 2 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234316 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234316 GSM2835918 SRA626226 SRX3342728 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 3 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234317 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234317 GSM2835919 SRA626226 SRX3342729 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 4 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234318 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234318 GSM2835920 SRA626226 SRX3342730 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 5 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234319 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234319 GSM2835921 SRA626226 SRX3342731 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 6 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234320 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234320 GSM2835922 SRA626226 SRX3342732 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 7 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234321 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234321 GSM2835923 SRA626226 SRX3342733 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 8 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234322 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234322 GSM2835924 SRA626226 SRX3342734 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 9 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234323 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234323 GSM2835925 SRA626226 SRX3342735 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 10 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234324 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234324 GSM2835926 SRA626226 SRX3342736 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 11 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234325 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234325 GSM2835927 SRA626226 SRX3342737 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 12 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234326 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234326 GSM2835928 SRA626226 SRX3342738 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 13 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234327 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234327 GSM2835929 SRA626226 SRX3342739 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 14 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234328 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234328 GSM2835930 SRA626226 SRX3342740 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 15 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234329 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234329 GSM2835931 SRA626226 SRX3342741 RNA-Seq SINGLE SRP122914 PRJNA416291 106320 16 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 SRR6234330 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/006088/SRR6234330 GSM2835932 SRA626226 SRX3342742 RNA-Seq SINGLE SRP122914 PRJNA416291 106877 1 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289332 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289332 GSM2856492 SRA630478 SRX3390648 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 2 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289333 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289333 GSM2856493 SRA630478 SRX3390649 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 3 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289334 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289334 GSM2856494 SRA630478 SRX3390650 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 4 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289335 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289335 GSM2856495 SRA630478 SRX3390651 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 5 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289336 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289336 GSM2856496 SRA630478 SRX3390652 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 6 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289337 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289337 GSM2856497 SRA630478 SRX3390653 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 7 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289338 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289338 GSM2856498 SRA630478 SRX3390654 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 8 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289339 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289339 GSM2856499 SRA630478 SRX3390655 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 9 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289340 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289340 GSM2856500 SRA630478 SRX3390656 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 10 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289341 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289341 GSM2856501 SRA630478 SRX3390657 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 11 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289342 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289342 GSM2856502 SRA630478 SRX3390658 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 12 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289343 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289343 GSM2856503 SRA630478 SRX3390659 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 13 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289344 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289344 GSM2856504 SRA630478 SRX3390660 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 14 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289345 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289345 GSM2856505 SRA630478 SRX3390661 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 15 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289346 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289346 GSM2856506 SRA630478 SRX3390662 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 16 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289347 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289347 GSM2856507 SRA630478 SRX3390663 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 17 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289348 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289348 GSM2856508 SRA630478 SRX3390664 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 18 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289349 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289349 GSM2856509 SRA630478 SRX3390665 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 19 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289350 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289350 GSM2856510 SRA630478 SRX3390666 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 20 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289351 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289351 GSM2856511 SRA630478 SRX3390667 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 21 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289352 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289352 GSM2856512 SRA630478 SRX3390668 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 22 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289353 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289353 GSM2856513 SRA630478 SRX3390669 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 23 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289354 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289354 GSM2856514 SRA630478 SRX3390670 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 24 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289355 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289355 GSM2856515 SRA630478 SRX3390671 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 25 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289356 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289356 GSM2856516 SRA630478 SRX3390672 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 26 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289357 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289357 GSM2856517 SRA630478 SRX3390673 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 27 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289358 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289358 GSM2856518 SRA630478 SRX3390674 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 28 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289359 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289359 GSM2856519 SRA630478 SRX3390675 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 29 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289360 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289360 GSM2856520 SRA630478 SRX3390676 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 30 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289361 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289361 GSM2856521 SRA630478 SRX3390677 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 31 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289362 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289362 GSM2856522 SRA630478 SRX3390678 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 32 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289363 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289363 GSM2856523 SRA630478 SRX3390679 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 33 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289364 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289364 GSM2856524 SRA630478 SRX3390680 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 34 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289365 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289365 GSM2856525 SRA630478 SRX3390681 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 35 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289366 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289366 GSM2856526 SRA630478 SRX3390682 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 36 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289367 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289367 GSM2856527 SRA630478 SRX3390683 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 37 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289368 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289368 GSM2856528 SRA630478 SRX3390684 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 38 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289369 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289369 GSM2856529 SRA630478 SRX3390685 RNA-Seq PAIRED SRP124956 PRJNA418305 106877 39 Carsten Lueder Changes in the gene expression in the olfactory organ of Xenopus laevis We report changes of the olfactory receptor gene expression and other important gene over the timecourse of metamorphosis Carsten Lueder, Katarina Dittrich Comparison of larval and adult stages under normal conditions and after an injury 0 57683 SRP124956 SRR6289370 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006141/SRR6289370 GSM2856530 SRA630478 SRX3390686 RNA-Seq PAIRED SRP124956 PRJNA418305 107424 1 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326658 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006178/SRR6326658 GSM2866830 SRA634412 SRX3426351 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 2 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326659 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006178/SRR6326659 GSM2866831 SRA634412 SRX3426352 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 3 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326660 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326660 GSM2866832 SRA634412 SRX3426353 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 4 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326661 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326661 GSM2866833 SRA634412 SRX3426354 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 5 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326662 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326662 GSM2866834 SRA634412 SRX3426355 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 6 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326663 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326663 GSM2866835 SRA634412 SRX3426356 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 7 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326664 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326664 GSM2866836 SRA634412 SRX3426357 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 8 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326665 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326665 GSM2866837 SRA634412 SRX3426358 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 9 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326666 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326666 GSM2866838 SRA634412 SRX3426359 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 10 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326667 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326667 GSM2866839 SRA634412 SRX3426360 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 11 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326668 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326668 GSM2866840 SRA634412 SRX3426361 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 12 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326669 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326669 GSM2866841 SRA634412 SRX3426362 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 13 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326670 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/006178/SRR6326670 GSM2866842 SRA634412 SRX3426363 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 14 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326671 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326671 GSM2866843 SRA634412 SRX3426364 RNA-Seq PAIRED SRP125755 PRJNA420057 107424 15 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses. 29709598 54855 SRP125755 SRR6326672 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/006178/SRR6326672 GSM2866844 SRA634412 SRX3426365 RNA-Seq PAIRED SRP125755 PRJNA420057 110063 1 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666795 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666795/SRR6666795.1 GSM2977205 SRA655102 SRX3643656 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 2 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666796 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666796/SRR6666796.1 GSM2977206 SRA655102 SRX3643657 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 3 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666797 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666797/SRR6666797.1 GSM2977207 SRA655102 SRX3643658 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 4 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666798 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666798/SRR6666798.1 GSM2977208 SRA655102 SRX3643659 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 5 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666799 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666799/SRR6666799.1 GSM2977209 SRA655102 SRX3643660 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 6 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666800 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666800/SRR6666800.1 GSM2977210 SRA655102 SRX3643661 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 7 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666801 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666801/SRR6666801.1 GSM2977211 SRA655102 SRX3643662 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 8 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666802 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666802/SRR6666802.1 GSM2977212 SRA655102 SRX3643663 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 9 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666803 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666803/SRR6666803.1 GSM2977213 SRA655102 SRX3643664 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 10 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666804 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666804/SRR6666804.1 GSM2977214 SRA655102 SRX3643665 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 11 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666805 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666805/SRR6666805.1 GSM2977215 SRA655102 SRX3643666 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 12 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666806 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666806/SRR6666806.1 GSM2977216 SRA655102 SRX3643667 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 13 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666807 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666807/SRR6666807.1 GSM2977217 SRA655102 SRX3643668 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 14 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666808 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666808/SRR6666808.1 GSM2977218 SRA655102 SRX3643669 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 15 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666809 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666809/SRR6666809.1 GSM2977219 SRA655102 SRX3643670 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 16 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666810 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666810/SRR6666810.1 GSM2977220 SRA655102 SRX3643671 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 17 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666811 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666811/SRR6666811.1 GSM2977221 SRA655102 SRX3643672 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 18 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666812 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666812/SRR6666812.1 GSM2977222 SRA655102 SRX3643673 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 19 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666813 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666813/SRR6666813.1 GSM2977223 SRA655102 SRX3643674 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 20 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666814 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666814/SRR6666814.1 GSM2977224 SRA655102 SRX3643675 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 21 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666815 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666815/SRR6666815.1 GSM2977225 SRA655102 SRX3643676 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 22 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666816 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666816/SRR6666816.1 GSM2977226 SRA655102 SRX3643677 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 23 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666817 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666817/SRR6666817.1 GSM2977227 SRA655102 SRX3643678 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 24 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666818 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666818/SRR6666818.1 GSM2977228 SRA655102 SRX3643679 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 25 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666819 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666819/SRR6666819.1 GSM2977229 SRA655102 SRX3643680 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 26 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666820 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666820/SRR6666820.1 GSM2977230 SRA655102 SRX3643681 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 27 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666821 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666821/SRR6666821.1 GSM2977231 SRA655102 SRX3643682 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 28 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666822 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666822/SRR6666822.1 GSM2977232 SRA655102 SRX3643683 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 29 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666823 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666823/SRR6666823.1 GSM2977233 SRA655102 SRX3643684 RNA-Seq SINGLE SRP132061 PRJNA432702 110063 30 Zhihua Jiang Profiling of alternative transcription start sites and alternative polyadenylation sites in Xenopus tropicalis We have developed both WTSS-seq (whole transcriptome start site sequencing) and WTTS-seq (whole transcriptome termini site sequencing) methods to capt Zhihua Jiang, Xiang Zhou, Yangzi Zhang, Jennifer Michal, Lujiang Qu A total of 14 WTSS-seq libraries were constructed using six individual adult males, six individual adult females and an RNA pool with three adult females (repeated twice). One CAGE-seq library was prepared with the three adult female pool using service provided by DNAFORM Precision Gene Technologies, Yokohama, Japan. The same three-female pool was used to develop one HATT-seq library. The same six individual males and six individual females were also used to profile 3’-ends of transcripts using WTTS-seq for a total of 12 libraries. One embryo pool was formed using total RNA collected from two families at stage 6, 8, 11, 15 and 28. As well, an adult pool was prepared from three male and three female adults. The embryo and adult pools were used to construct a total of one Iso-seq libraries. In brief, this submission involved 30 libraries in total. 0 57141 SRP132061 SRR6666824 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR6666824/SRR6666824.1 GSM2977234 SRA655102 SRX3643685 RNA-Seq SINGLE SRP132061 PRJNA432702 111171 1 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786715 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786715 GSM3024606 SRA662540 SRX3746139 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 2 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786716 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786716 GSM3024606 SRA662540 SRX3746139 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 3 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786717 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786717 GSM3024606 SRA662540 SRX3746139 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 4 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786718 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786718 GSM3024607 SRA662540 SRX3746140 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 5 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786719 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786719 GSM3024607 SRA662540 SRX3746140 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 6 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786720 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786720 GSM3024607 SRA662540 SRX3746140 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 7 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786721 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786721 GSM3024608 SRA662540 SRX3746141 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 8 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786722 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786722 GSM3024608 SRA662540 SRX3746141 RNA-Seq PAIRED SRP133568 PRJNA436118 111171 9 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression 30165493 55254 SRP133568 SRR6786723 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006627/SRR6786723 GSM3024608 SRA662540 SRX3746141 RNA-Seq PAIRED SRP133568 PRJNA436118 111454 1 Ye Jin RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes Ye Jin, Daniel Weinstein mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz. 29530451 54672 SRP134011 SRR6809320 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006649/SRR6809320 GSM3031399 SRA664463 SRX3767534 RNA-Seq PAIRED SRP134011 PRJNA437084 111454 2 Ye Jin RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes Ye Jin, Daniel Weinstein mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz. 29530451 54672 SRP134011 SRR6809321 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006649/SRR6809321 GSM3031400 SRA664463 SRX3767535 RNA-Seq PAIRED SRP134011 PRJNA437084 111454 3 Ye Jin RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes Ye Jin, Daniel Weinstein mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz. 29530451 54672 SRP134011 SRR6809322 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006649/SRR6809322 GSM3031401 SRA664463 SRX3767536 RNA-Seq PAIRED SRP134011 PRJNA437084 111454 4 Ye Jin RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes Ye Jin, Daniel Weinstein mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz. 29530451 54672 SRP134011 SRR6809323 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006649/SRR6809323 GSM3031402 SRA664463 SRX3767537 RNA-Seq PAIRED SRP134011 PRJNA437084 111639 1 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821881 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006661/SRR6821881 GSM3036206 SRA665478 SRX3778722 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 2 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821882 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006661/SRR6821882 GSM3036207 SRA665478 SRX3778723 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 3 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821883 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006661/SRR6821883 GSM3036208 SRA665478 SRX3778724 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 4 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821884 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006661/SRR6821884 GSM3036209 SRA665478 SRX3778725 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 5 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821885 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006661/SRR6821885 GSM3036210 SRA665478 SRX3778726 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 6 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821886 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006661/SRR6821886 GSM3036211 SRA665478 SRX3778727 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 7 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821887 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006661/SRR6821887 GSM3036212 SRA665478 SRX3778728 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 8 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821888 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006662/SRR6821888 GSM3036213 SRA665478 SRX3778729 RNA-Seq PAIRED SRP134281 PRJNA437641 111639 9 Margaret Saha Xenopus andrei RNA-Seq The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcri Margaret Saha, Mark Pownall, Ronald Cutler, Margaret Saha Embryos were obtained from one mating of two adult X. andrei frogs. Nine samples are analyzed, each from a different developmental stage. 29900348 55017 SRP134281 SRR6821889 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/006662/SRR6821889 GSM3036214 SRA665478 SRX3778730 RNA-Seq PAIRED SRP134281 PRJNA437641 112249 1 Richard Harland Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway. Richard Harland, Rachel Kjolby Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos 31285353 56112 SRP136318 SRR6884606 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006723/SRR6884606 GSM3062917 SRA672001 SRX3836834 ChIP-Seq SINGLE SRP136318 PRJNA445381 112249 2 Richard Harland Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway. Richard Harland, Rachel Kjolby Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos 31285353 56112 SRP136318 SRR6884607 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006723/SRR6884607 GSM3062918 SRA672001 SRX3836835 ChIP-Seq SINGLE SRP136318 PRJNA445381 112249 3 Richard Harland Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway. Richard Harland, Rachel Kjolby Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos 31285353 56112 SRP136318 SRR6884608 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006723/SRR6884608 GSM3062919 SRA672001 SRX3836836 ChIP-Seq SINGLE SRP136318 PRJNA445381 112249 4 Richard Harland Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway. Richard Harland, Rachel Kjolby Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos 31285353 56112 SRP136318 SRR6884609 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006723/SRR6884609 GSM3062920 SRA672001 SRX3836837 ChIP-Seq SINGLE SRP136318 PRJNA445381 112364 1 Chris Kintner RNAseq profiliing of Xenopus laevis animal caps expressing Xnr2 at st14 To determine if Xnr2 induces mesodermal genes expression in ectodermal tissues Chris Kintner, Yuan-Hung Chien We force the ectodermal tissues to express xnr2 by injecting xnr2 RNA at the 2-4cell stage. The animal caps were excised at st10, the blastula stage. Tissues are cultured at DFA and harvested at stage 14 for RNA extraction. 29738711 54874 SRP136530 SRR6902663 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006740/SRR6902663 GSM3068398 SRA675067 SRX3851506 RNA-Seq SINGLE SRP136530 PRJNA445807 112364 2 Chris Kintner RNAseq profiliing of Xenopus laevis animal caps expressing Xnr2 at st14 To determine if Xnr2 induces mesodermal genes expression in ectodermal tissues Chris Kintner, Yuan-Hung Chien We force the ectodermal tissues to express xnr2 by injecting xnr2 RNA at the 2-4cell stage. The animal caps were excised at st10, the blastula stage. Tissues are cultured at DFA and harvested at stage 14 for RNA extraction. 29738711 54874 SRP136530 SRR6902664 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006740/SRR6902664 GSM3068399 SRA675067 SRX3851507 RNA-Seq SINGLE SRP136530 PRJNA445807 112718 1 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941643 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941643 GSM3082043 SRA681856 SRX3885766 RNA-Seq SINGLE SRP137258 PRJNA448780 112718 2 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941644 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941644 GSM3082044 SRA681856 SRX3885767 RNA-Seq SINGLE SRP137258 PRJNA448780 112718 3 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941645 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941645 GSM3082045 SRA681856 SRX3885768 RNA-Seq SINGLE SRP137258 PRJNA448780 112718 4 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941646 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941646 GSM3082046 SRA681856 SRX3885769 RNA-Seq SINGLE SRP137258 PRJNA448780 112718 5 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941647 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941647 GSM3082047 SRA681856 SRX3885770 RNA-Seq SINGLE SRP137258 PRJNA448780 112718 6 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941648 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941648 GSM3082048 SRA681856 SRX3885771 RNA-Seq SINGLE SRP137258 PRJNA448780 112718 7 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941649 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941649 GSM3082049 SRA681856 SRX3885772 RNA-Seq SINGLE SRP137258 PRJNA448780 112718 8 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition 29769220 54918 SRP137258 SRR6941650 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/006778/SRR6941650 GSM3082050 SRA681856 SRX3885773 RNA-Seq SINGLE SRP137258 PRJNA448780 113074 1 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061415 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061415 GSM3095780 SRA694978 SRX3992347 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 2 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061416 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061416 GSM3095781 SRA694978 SRX3992348 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 3 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061417 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061417 GSM3095782 SRA694978 SRX3992349 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 4 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061418 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061418 GSM3095783 SRA694978 SRX3992350 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 5 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061419 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061419 GSM3095784 SRA694978 SRX3992351 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 6 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061420 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061420 GSM3095785 SRA694978 SRX3992352 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 7 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061421 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061421 GSM3095786 SRA694978 SRX3992353 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 8 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061422 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061422 GSM3095787 SRA694978 SRX3992354 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 9 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061423 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061423 GSM3095788 SRA694978 SRX3992355 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 10 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061424 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061424 GSM3095789 SRA694978 SRX3992356 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 11 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061425 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061425 GSM3095790 SRA694978 SRX3992357 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 12 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061426 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061426 GSM3095791 SRA694978 SRX3992358 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 13 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061427 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061427 GSM3095792 SRA694978 SRX3992359 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 14 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061428 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061428 GSM3095793 SRA694978 SRX3992360 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 15 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061429 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061429 GSM3095794 SRA694978 SRX3992361 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 16 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061430 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061430 GSM3095795 SRA694978 SRX3992362 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 17 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061431 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061431 GSM3095796 SRA694978 SRX3992363 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 18 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061432 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061432 GSM3095797 SRA694978 SRX3992364 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 19 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061433 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061433 GSM3095798 SRA694978 SRX3992365 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 20 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061434 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061434 GSM3095799 SRA694978 SRX3992366 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 21 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061435 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061435 GSM3095800 SRA694978 SRX3992367 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 22 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061437 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061437 GSM3095802 SRA694978 SRX3992369 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 23 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061438 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061438 GSM3095803 SRA694978 SRX3992370 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 24 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061439 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061439 GSM3095804 SRA694978 SRX3992371 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 25 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061440 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061440 GSM3095805 SRA694978 SRX3992372 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 26 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061441 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061441 GSM3095806 SRA694978 SRX3992373 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 27 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061442 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061442 GSM3095807 SRA694978 SRX3992374 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 28 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061443 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061443 GSM3095808 SRA694978 SRX3992375 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 29 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061444 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061444 GSM3095809 SRA694978 SRX3992376 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 30 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061445 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061445 GSM3095810 SRA694978 SRX3992377 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 31 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061446 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061446 GSM3095811 SRA694978 SRX3992378 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 32 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061447 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061447 GSM3095812 SRA694978 SRX3992379 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 33 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061448 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061448 GSM3095813 SRA694978 SRX3992380 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 34 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061449 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061449 GSM3095814 SRA694978 SRX3992381 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 35 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061450 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061450 GSM3095815 SRA694978 SRX3992382 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 36 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061451 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061451 GSM3095816 SRA694978 SRX3992383 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 37 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061452 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061452 GSM3095817 SRA694978 SRX3992384 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 38 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061453 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061453 GSM3095818 SRA694978 SRX3992385 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 39 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061454 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061454 GSM3095819 SRA694978 SRX3992386 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 40 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061455 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061455 GSM3095820 SRA694978 SRX3992387 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 41 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061456 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061456 GSM3095821 SRA694978 SRX3992388 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 42 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061457 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061457 GSM3095822 SRA694978 SRX3992389 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 43 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061458 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061458 GSM3095823 SRA694978 SRX3992390 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 44 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061459 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061459 GSM3095824 SRA694978 SRX3992391 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 45 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061460 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061460 GSM3095825 SRA694978 SRX3992392 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 46 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061461 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061461 GSM3095826 SRA694978 SRX3992393 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 47 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061462 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061462 GSM3095827 SRA694978 SRX3992394 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 48 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061463 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061463 GSM3095828 SRA694978 SRX3992395 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 49 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061464 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061464 GSM3095829 SRA694978 SRX3992396 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 50 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061465 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061465 GSM3095830 SRA694978 SRX3992397 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 51 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061466 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061466 GSM3095831 SRA694978 SRX3992398 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 52 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061467 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061467 GSM3095832 SRA694978 SRX3992399 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 53 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061468 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061468 GSM3095833 SRA694978 SRX3992400 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 54 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061469 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061469 GSM3095834 SRA694978 SRX3992401 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 55 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061470 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061470 GSM3095835 SRA694978 SRX3992402 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 56 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061471 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061471 GSM3095836 SRA694978 SRX3992403 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 57 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061472 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061472 GSM3095837 SRA694978 SRX3992404 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 58 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061473 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061473 GSM3095838 SRA694978 SRX3992405 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 59 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061474 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061474 GSM3095839 SRA694978 SRX3992406 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 60 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061475 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061475 GSM3095840 SRA694978 SRX3992407 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 61 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061476 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061476 GSM3095841 SRA694978 SRX3992408 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 62 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061477 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061477 GSM3095842 SRA694978 SRX3992409 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 63 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061478 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061478 GSM3095843 SRA694978 SRX3992410 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 64 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061479 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061479 GSM3095844 SRA694978 SRX3992411 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 65 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061480 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061480 GSM3095845 SRA694978 SRX3992412 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 66 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061481 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061481 GSM3095846 SRA694978 SRX3992413 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 67 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061482 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061482 GSM3095847 SRA694978 SRX3992414 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 68 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061483 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061483 GSM3095848 SRA694978 SRX3992415 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 69 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061484 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061484 GSM3095849 SRA694978 SRX3992416 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 70 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061485 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061485 GSM3095850 SRA694978 SRX3992417 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 71 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061486 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061486 GSM3095851 SRA694978 SRX3992418 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 72 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061487 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061487 GSM3095852 SRA694978 SRX3992419 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 73 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061488 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061488 GSM3095853 SRA694978 SRX3992420 RNA-Seq PAIRED SRP142544 PRJNA449931 113074 74 James Briggs The dynamics of gene expression in vertebrate embryogenesis at single cell resolution Time series of single cell transcriptome measurements can reveal dynamic features of cell differentiation pathways. From measurements of whole frog em James Briggs, James Briggs, Caleb Weinreb, Daniel Wagner, Sean Megason, Leonid Peshkin, Marc Kirschner, Allon Klein 136,966 single cell transcriptomes were profiled from whole Xenopus tropicalis embryos at ten timepoints during the first 24 hours of its embryonic development. The data includes 75 total single cell RNA sequencing libraries, collected in 2 replicate timeseries. 4 of the 75 libraries focussed on dissected neural plate border tissue. The counts data for all pass filter cells are available in a single matrix (see "Corrected_combined.annotated_counts.tsv.gz" and "Raw_combined.annotated_counts.tsv.gz"). Alternatively, raw FASTQ or unfiltered counts files are also available for each individual library. 29700227 54862 SRP142544 SRR7061489 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006895/SRR7061489 GSM3095854 SRA694978 SRX3992421 RNA-Seq PAIRED SRP142544 PRJNA449931 113186 1 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010183 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010183 GSM3099554 SRA691345 SRX3942662 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 2 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010184 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010184 GSM3099555 SRA691345 SRX3942663 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 3 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010185 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010185 GSM3099556 SRA691345 SRX3942664 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 4 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010186 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010186 GSM3099557 SRA691345 SRX3942665 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 5 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010187 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010187 GSM3099558 SRA691345 SRX3942666 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 6 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010188 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010188 GSM3099559 SRA691345 SRX3942667 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 7 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010189 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010189 GSM3099560 SRA691345 SRX3942668 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 8 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010190 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010190 GSM3099561 SRA691345 SRX3942669 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 9 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010191 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010191 GSM3099562 SRA691345 SRX3942670 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 10 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010192 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010192 GSM3099563 SRA691345 SRX3942671 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 11 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010193 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010193 GSM3099564 SRA691345 SRX3942672 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 12 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010194 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010194 GSM3099565 SRA691345 SRX3942673 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 13 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010195 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010195 GSM3099566 SRA691345 SRX3942674 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 14 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010196 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010196 GSM3099567 SRA691345 SRX3942675 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 15 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010197 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010197 GSM3099568 SRA691345 SRX3942676 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 16 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010198 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010198 GSM3099569 SRA691345 SRX3942677 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 17 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010199 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010199 GSM3099570 SRA691345 SRX3942678 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 18 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010200 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010200 GSM3099571 SRA691345 SRX3942679 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 19 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010201 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010201 GSM3099572 SRA691345 SRX3942680 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 20 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010202 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010202 GSM3099573 SRA691345 SRX3942681 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 21 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010203 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010203 GSM3099574 SRA691345 SRX3942682 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 22 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010204 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010204 GSM3099575 SRA691345 SRX3942683 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 23 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010205 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010205 GSM3099576 SRA691345 SRX3942684 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 24 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010206 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010206 GSM3099577 SRA691345 SRX3942685 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 25 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010207 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010207 GSM3099578 SRA691345 SRX3942686 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 26 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010208 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010208 GSM3099579 SRA691345 SRX3942687 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 27 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010209 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010209 GSM3099580 SRA691345 SRX3942688 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 28 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010210 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010210 GSM3099581 SRA691345 SRX3942689 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 29 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010211 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010211 GSM3099582 SRA691345 SRX3942690 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 30 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010212 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010212 GSM3099583 SRA691345 SRX3942691 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 31 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010213 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010213 GSM3099584 SRA691345 SRX3942692 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 32 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010214 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010214 GSM3099585 SRA691345 SRX3942693 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 33 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010215 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010215 GSM3099586 SRA691345 SRX3942694 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 34 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010216 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010216 GSM3099587 SRA691345 SRX3942695 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 35 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010217 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010217 GSM3099588 SRA691345 SRX3942696 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 36 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010218 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010218 GSM3099589 SRA691345 SRX3942697 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 37 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010219 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010219 GSM3099590 SRA691345 SRX3942698 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 38 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010220 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010220 GSM3099591 SRA691345 SRX3942699 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 39 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010221 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010221 GSM3099592 SRA691345 SRX3942700 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 40 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010222 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010222 GSM3099593 SRA691345 SRX3942701 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 41 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010223 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010223 GSM3099594 SRA691345 SRX3942702 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 42 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010224 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010224 GSM3099595 SRA691345 SRX3942703 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 43 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010225 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010225 GSM3099596 SRA691345 SRX3942704 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 44 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010226 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010226 GSM3099597 SRA691345 SRX3942705 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 45 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010227 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010227 GSM3099598 SRA691345 SRX3942706 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 46 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010228 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010228 GSM3099599 SRA691345 SRX3942707 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 47 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010229 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010229 GSM3099600 SRA691345 SRX3942708 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 48 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010230 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010230 GSM3099601 SRA691345 SRX3942709 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 49 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010231 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010231 GSM3099602 SRA691345 SRX3942710 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 50 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010232 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010232 GSM3099603 SRA691345 SRX3942711 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 51 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010233 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010233 GSM3099604 SRA691345 SRX3942712 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 52 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010234 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010234 GSM3099605 SRA691345 SRX3942713 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 53 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010235 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010235 GSM3099606 SRA691345 SRX3942714 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 54 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010236 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010236 GSM3099607 SRA691345 SRX3942715 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 55 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010237 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010237 GSM3099608 SRA691345 SRX3942716 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 56 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010238 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010238 GSM3099609 SRA691345 SRX3942717 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 57 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010239 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010239 GSM3099610 SRA691345 SRX3942718 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 58 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010240 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010240 GSM3099611 SRA691345 SRX3942719 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 59 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010241 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010241 GSM3099612 SRA691345 SRX3942720 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 60 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010242 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010242 GSM3099613 SRA691345 SRX3942721 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 61 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010243 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010243 GSM3099614 SRA691345 SRX3942722 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 62 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010244 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010244 GSM3099615 SRA691345 SRX3942723 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 63 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010245 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010245 GSM3099616 SRA691345 SRX3942724 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 64 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010246 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010246 GSM3099617 SRA691345 SRX3942725 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 65 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010247 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010247 GSM3099618 SRA691345 SRX3942726 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 66 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010248 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010248 GSM3099619 SRA691345 SRX3942727 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 67 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010249 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010249 GSM3099620 SRA691345 SRX3942728 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 68 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010250 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010250 GSM3099621 SRA691345 SRX3942729 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 69 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010251 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010251 GSM3099622 SRA691345 SRX3942730 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 70 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010252 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010252 GSM3099623 SRA691345 SRX3942731 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 71 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010253 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010253 GSM3099624 SRA691345 SRX3942732 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 72 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010254 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010254 GSM3099625 SRA691345 SRX3942733 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 73 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010255 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010255 GSM3099626 SRA691345 SRX3942734 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 74 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010256 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010256 GSM3099627 SRA691345 SRX3942735 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 75 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010257 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010257 GSM3099628 SRA691345 SRX3942736 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 76 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010258 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010258 GSM3099629 SRA691345 SRX3942737 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 77 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010259 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010259 GSM3099630 SRA691345 SRX3942738 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 78 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010260 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010260 GSM3099631 SRA691345 SRX3942739 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 79 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010261 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010261 GSM3099632 SRA691345 SRX3942740 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 80 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010262 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010262 GSM3099633 SRA691345 SRX3942741 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 81 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010263 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010263 GSM3099634 SRA691345 SRX3942742 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 82 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010264 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010264 GSM3099635 SRA691345 SRX3942743 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 83 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010265 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010265 GSM3099636 SRA691345 SRX3942744 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 84 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010266 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010266 GSM3099637 SRA691345 SRX3942745 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 85 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010267 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010267 GSM3099638 SRA691345 SRX3942746 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 86 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010268 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010268 GSM3099639 SRA691345 SRX3942747 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 87 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010269 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010269 GSM3099640 SRA691345 SRX3942748 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 88 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010270 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010270 GSM3099641 SRA691345 SRX3942749 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 89 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010271 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010271 GSM3099642 SRA691345 SRX3942750 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 90 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010272 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010272 GSM3099643 SRA691345 SRX3942751 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 91 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010273 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010273 GSM3099644 SRA691345 SRX3942752 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 92 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010274 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010274 GSM3099645 SRA691345 SRX3942753 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 93 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010275 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010275 GSM3099646 SRA691345 SRX3942754 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 94 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010276 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010276 GSM3099647 SRA691345 SRX3942755 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 95 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010277 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010277 GSM3099648 SRA691345 SRX3942756 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 96 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010278 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010278 GSM3099649 SRA691345 SRX3942757 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 97 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010279 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010279 GSM3099650 SRA691345 SRX3942758 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 98 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010280 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010280 GSM3099651 SRA691345 SRX3942759 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 99 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010281 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010281 GSM3099652 SRA691345 SRX3942760 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 100 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010282 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010282 GSM3099653 SRA691345 SRX3942761 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 101 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010083 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010083 GSM3099454 SRA691345 SRX3942562 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 102 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010084 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010084 GSM3099455 SRA691345 SRX3942563 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 103 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010085 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010085 GSM3099456 SRA691345 SRX3942564 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 104 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010086 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010086 GSM3099457 SRA691345 SRX3942565 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 105 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010087 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010087 GSM3099458 SRA691345 SRX3942566 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 106 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010088 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010088 GSM3099459 SRA691345 SRX3942567 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 107 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010089 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010089 GSM3099460 SRA691345 SRX3942568 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 108 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010090 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010090 GSM3099461 SRA691345 SRX3942569 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 109 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010091 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010091 GSM3099462 SRA691345 SRX3942570 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 110 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010092 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010092 GSM3099463 SRA691345 SRX3942571 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 111 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010093 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010093 GSM3099464 SRA691345 SRX3942572 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 112 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010094 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010094 GSM3099465 SRA691345 SRX3942573 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 113 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010095 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010095 GSM3099466 SRA691345 SRX3942574 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 114 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010096 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010096 GSM3099467 SRA691345 SRX3942575 ChIP-Seq PAIRED SRP140517 PRJNA450396 113186 115 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010097 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010097 GSM3099468 SRA691345 SRX3942576 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 116 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010098 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010098 GSM3099469 SRA691345 SRX3942577 ChIP-Seq PAIRED SRP140517 PRJNA450396 113186 117 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010099 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010099 GSM3099470 SRA691345 SRX3942578 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 118 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010100 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010100 GSM3099471 SRA691345 SRX3942579 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 119 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010101 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010101 GSM3099472 SRA691345 SRX3942580 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 120 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010102 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010102 GSM3099473 SRA691345 SRX3942581 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 121 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010103 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010103 GSM3099474 SRA691345 SRX3942582 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 122 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010104 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010104 GSM3099475 SRA691345 SRX3942583 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 123 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010105 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010105 GSM3099476 SRA691345 SRX3942584 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 124 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010106 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010106 GSM3099477 SRA691345 SRX3942585 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 125 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010107 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010107 GSM3099478 SRA691345 SRX3942586 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 126 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010108 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010108 GSM3099479 SRA691345 SRX3942587 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 127 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010109 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010109 GSM3099480 SRA691345 SRX3942588 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 128 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010110 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010110 GSM3099481 SRA691345 SRX3942589 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 129 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010111 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010111 GSM3099482 SRA691345 SRX3942590 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 130 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010112 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010112 GSM3099483 SRA691345 SRX3942591 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 131 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010113 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010113 GSM3099484 SRA691345 SRX3942592 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 132 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010114 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010114 GSM3099485 SRA691345 SRX3942593 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 133 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010115 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010115 GSM3099486 SRA691345 SRX3942594 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 134 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010116 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010116 GSM3099487 SRA691345 SRX3942595 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 135 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010117 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010117 GSM3099488 SRA691345 SRX3942596 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 136 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010118 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010118 GSM3099489 SRA691345 SRX3942597 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 137 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010119 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010119 GSM3099490 SRA691345 SRX3942598 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 138 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010120 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010120 GSM3099491 SRA691345 SRX3942599 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 139 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010121 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010121 GSM3099492 SRA691345 SRX3942600 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 140 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010122 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010122 GSM3099493 SRA691345 SRX3942601 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 141 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010123 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010123 GSM3099494 SRA691345 SRX3942602 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 142 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010124 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010124 GSM3099495 SRA691345 SRX3942603 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 143 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010125 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010125 GSM3099496 SRA691345 SRX3942604 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 144 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010126 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010126 GSM3099497 SRA691345 SRX3942605 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 145 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010127 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010127 GSM3099498 SRA691345 SRX3942606 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 146 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010128 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010128 GSM3099499 SRA691345 SRX3942607 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 147 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010129 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010129 GSM3099500 SRA691345 SRX3942608 ChIP-Seq PAIRED SRP140517 PRJNA450396 113186 148 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010130 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010130 GSM3099501 SRA691345 SRX3942609 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 149 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010131 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010131 GSM3099502 SRA691345 SRX3942610 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 150 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010132 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010132 GSM3099503 SRA691345 SRX3942611 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 151 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010133 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010133 GSM3099504 SRA691345 SRX3942612 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 152 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010134 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010134 GSM3099505 SRA691345 SRX3942613 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 153 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010135 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010135 GSM3099506 SRA691345 SRX3942614 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 154 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010136 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010136 GSM3099507 SRA691345 SRX3942615 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 155 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010137 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010137 GSM3099508 SRA691345 SRX3942616 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 156 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010138 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010138 GSM3099509 SRA691345 SRX3942617 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 157 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010139 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010139 GSM3099510 SRA691345 SRX3942618 ChIP-Seq PAIRED SRP140517 PRJNA450396 113186 158 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010140 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010140 GSM3099511 SRA691345 SRX3942619 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 159 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010141 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010141 GSM3099512 SRA691345 SRX3942620 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 160 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010142 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010142 GSM3099513 SRA691345 SRX3942621 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 161 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010143 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010143 GSM3099514 SRA691345 SRX3942622 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 162 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010144 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010144 GSM3099515 SRA691345 SRX3942623 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 163 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010145 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010145 GSM3099516 SRA691345 SRX3942624 DNase-Hypersensitivity SINGLE SRP140517 PRJNA450396 113186 164 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010146 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010146 GSM3099517 SRA691345 SRX3942625 DNase-Hypersensitivity PAIRED SRP140517 PRJNA450396 113186 165 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010147 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010147 GSM3099518 SRA691345 SRX3942626 DNase-Hypersensitivity SINGLE SRP140517 PRJNA450396 113186 166 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010148 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010148 GSM3099519 SRA691345 SRX3942627 DNase-Hypersensitivity PAIRED SRP140517 PRJNA450396 113186 167 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010149 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010149 GSM3099520 SRA691345 SRX3942628 DNase-Hypersensitivity SINGLE SRP140517 PRJNA450396 113186 168 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010150 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010150 GSM3099521 SRA691345 SRX3942629 DNase-Hypersensitivity PAIRED SRP140517 PRJNA450396 113186 169 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010151 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010151 GSM3099522 SRA691345 SRX3942630 OTHER PAIRED SRP140517 PRJNA450396 113186 170 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010152 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010152 GSM3099523 SRA691345 SRX3942631 OTHER PAIRED SRP140517 PRJNA450396 113186 171 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010153 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010153 GSM3099524 SRA691345 SRX3942632 OTHER PAIRED SRP140517 PRJNA450396 113186 172 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010154 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010154 GSM3099525 SRA691345 SRX3942633 OTHER PAIRED SRP140517 PRJNA450396 113186 173 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010155 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010155 GSM3099526 SRA691345 SRX3942634 OTHER PAIRED SRP140517 PRJNA450396 113186 174 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010156 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010156 GSM3099527 SRA691345 SRX3942635 OTHER PAIRED SRP140517 PRJNA450396 113186 175 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010157 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010157 GSM3099528 SRA691345 SRX3942636 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 176 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010158 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010158 GSM3099529 SRA691345 SRX3942637 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 177 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010159 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010159 GSM3099530 SRA691345 SRX3942638 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 178 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010160 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010160 GSM3099531 SRA691345 SRX3942639 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 179 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010161 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010161 GSM3099532 SRA691345 SRX3942640 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 180 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010162 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010162 GSM3099533 SRA691345 SRX3942641 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 181 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010163 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010163 GSM3099534 SRA691345 SRX3942642 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 182 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010164 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010164 GSM3099535 SRA691345 SRX3942643 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 183 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010165 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010165 GSM3099536 SRA691345 SRX3942644 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 184 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010166 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010166 GSM3099537 SRA691345 SRX3942645 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 185 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010167 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010167 GSM3099538 SRA691345 SRX3942646 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010168 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010168 GSM3099539 SRA691345 SRX3942647 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 187 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010169 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010169 GSM3099540 SRA691345 SRX3942648 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 188 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010170 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010170 GSM3099541 SRA691345 SRX3942649 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 189 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010171 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010171 GSM3099542 SRA691345 SRX3942650 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 190 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010172 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010172 GSM3099543 SRA691345 SRX3942651 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 191 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010173 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010173 GSM3099544 SRA691345 SRX3942652 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 192 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010174 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010174 GSM3099545 SRA691345 SRX3942653 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 193 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010175 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010175 GSM3099546 SRA691345 SRX3942654 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 194 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010176 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010176 GSM3099547 SRA691345 SRX3942655 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 195 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010177 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010177 GSM3099548 SRA691345 SRX3942656 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 196 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010178 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010178 GSM3099549 SRA691345 SRX3942657 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 197 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010179 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010179 GSM3099550 SRA691345 SRX3942658 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 198 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010180 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010180 GSM3099551 SRA691345 SRX3942659 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 199 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010181 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010181 GSM3099552 SRA691345 SRX3942660 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 200 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010182 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010182 GSM3099553 SRA691345 SRX3942661 RNA-Seq PAIRED SRP140517 PRJNA450396 113186 201 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010081 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010081 GSM3099452 SRA691345 SRX3942560 ChIP-Seq SINGLE SRP140517 PRJNA450396 113186 202 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq. 31537794 56302 SRP140517 SRR7010082 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/006845/SRR7010082 GSM3099453 SRA691345 SRX3942561 ChIP-Seq SINGLE SRP140517 PRJNA450396 115220 1 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248465 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248465 GSM3171642 SRA713922 SRX4153291 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 2 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248466 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248466 GSM3171642 SRA713922 SRX4153291 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 3 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248467 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248467 GSM3171642 SRA713922 SRX4153291 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 4 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248468 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248468 GSM3171642 SRA713922 SRX4153291 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 5 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248469 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248469 GSM3171643 SRA713922 SRX4153292 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 6 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248470 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248470 GSM3171643 SRA713922 SRX4153292 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 7 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248471 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248471 GSM3171643 SRA713922 SRX4153292 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 8 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248472 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248472 GSM3171643 SRA713922 SRX4153292 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 9 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248473 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248473 GSM3171644 SRA713922 SRX4153293 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 10 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248474 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248474 GSM3171644 SRA713922 SRX4153293 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 11 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248475 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248475 GSM3171644 SRA713922 SRX4153293 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 12 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248476 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248476 GSM3171644 SRA713922 SRX4153293 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 13 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248477 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248477 GSM3171645 SRA713922 SRX4153294 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 14 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248478 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248478 GSM3171645 SRA713922 SRX4153294 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 15 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248479 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248479 GSM3171645 SRA713922 SRX4153294 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 16 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248480 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248480 GSM3171645 SRA713922 SRX4153294 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 17 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248481 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248481 GSM3171646 SRA713922 SRX4153295 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 18 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248482 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248482 GSM3171646 SRA713922 SRX4153295 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 19 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248483 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248483 GSM3171646 SRA713922 SRX4153295 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 20 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248484 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248484 GSM3171646 SRA713922 SRX4153295 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 21 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248485 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248485 GSM3171647 SRA713922 SRX4153296 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 22 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248486 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248486 GSM3171647 SRA713922 SRX4153296 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 23 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248487 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248487 GSM3171647 SRA713922 SRX4153296 RNA-Seq PAIRED SRP149548 PRJNA474192 115220 24 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149548 SRR7248488 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248488 GSM3171647 SRA713922 SRX4153296 RNA-Seq PAIRED SRP149548 PRJNA474192 115224 1 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248713 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248713 GSM3171680 SRA713924 SRX4153521 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 2 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248714 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248714 GSM3171680 SRA713924 SRX4153521 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 3 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248715 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248715 GSM3171680 SRA713924 SRX4153521 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 4 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248716 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248716 GSM3171680 SRA713924 SRX4153521 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 5 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248717 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248717 GSM3171681 SRA713924 SRX4153522 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 6 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248718 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248718 GSM3171681 SRA713924 SRX4153522 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 7 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248719 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248719 GSM3171681 SRA713924 SRX4153522 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 8 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248720 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248720 GSM3171681 SRA713924 SRX4153522 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 9 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248721 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248721 GSM3171682 SRA713924 SRX4153523 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 10 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248722 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248722 GSM3171682 SRA713924 SRX4153523 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 11 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248723 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248723 GSM3171682 SRA713924 SRX4153523 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 12 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248724 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248724 GSM3171682 SRA713924 SRX4153523 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 13 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248725 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248725 GSM3171683 SRA713924 SRX4153524 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 14 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248726 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248726 GSM3171683 SRA713924 SRX4153524 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 15 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248727 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248727 GSM3171683 SRA713924 SRX4153524 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 16 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248728 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248728 GSM3171683 SRA713924 SRX4153524 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 17 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248729 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248729 GSM3171684 SRA713924 SRX4153525 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 18 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248730 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248730 GSM3171684 SRA713924 SRX4153525 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 19 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248731 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248731 GSM3171684 SRA713924 SRX4153525 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 20 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248732 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248732 GSM3171684 SRA713924 SRX4153525 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 21 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248733 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248733 GSM3171685 SRA713924 SRX4153526 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 22 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248734 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248734 GSM3171685 SRA713924 SRX4153526 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 23 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248735 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248735 GSM3171685 SRA713924 SRX4153526 ChIP-Seq PAIRED SRP149552 PRJNA474199 115224 24 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer. 30842454 55761 SRP149552 SRR7248736 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/007078/SRR7248736 GSM3171685 SRA713924 SRX4153526 ChIP-Seq PAIRED SRP149552 PRJNA474199 116819 1 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500842 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/007325/SRR7500842 GSM3262255 SRA736036 SRX4370238 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 2 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500843 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500843 GSM3262255 SRA736036 SRX4370238 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 3 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500844 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500844 GSM3262256 SRA736036 SRX4370239 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 4 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500845 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500845 GSM3262256 SRA736036 SRX4370239 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 5 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500846 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500846 GSM3262257 SRA736036 SRX4370240 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 6 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500847 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500847 GSM3262257 SRA736036 SRX4370240 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 7 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500848 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500848 GSM3262258 SRA736036 SRX4370241 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 8 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500849 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/007325/SRR7500849 GSM3262258 SRA736036 SRX4370241 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 9 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500850 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/007325/SRR7500850 GSM3262259 SRA736036 SRX4370242 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 10 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500851 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500851 GSM3262259 SRA736036 SRX4370242 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 11 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500852 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/007325/SRR7500852 GSM3262260 SRA736036 SRX4370243 RNA-Seq SINGLE SRP152872 PRJNA480292 116819 12 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed. 30390632 55440 SRP152872 SRR7500853 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/007325/SRR7500853 GSM3262260 SRA736036 SRX4370243 RNA-Seq SINGLE SRP152872 PRJNA480292 117754 1 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 SRR7609575 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007431/SRR7609575 GSM3308290 SRA745502 SRX4474418 RNA-Seq PAIRED SRP155436 PRJNA483070 117754 2 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 SRR7609576 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007431/SRR7609576 GSM3308291 SRA745502 SRX4474419 RNA-Seq PAIRED SRP155436 PRJNA483070 117754 3 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 SRR7609577 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007431/SRR7609577 GSM3308292 SRA745502 SRX4474420 RNA-Seq PAIRED SRP155436 PRJNA483070 117754 4 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 SRR7609578 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007431/SRR7609578 GSM3308293 SRA745502 SRX4474421 RNA-Seq PAIRED SRP155436 PRJNA483070 117754 5 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 SRR7609579 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007431/SRR7609579 GSM3308294 SRA745502 SRX4474422 RNA-Seq PAIRED SRP155436 PRJNA483070 117754 6 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 SRR7609580 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007431/SRR7609580 GSM3308295 SRA745502 SRX4474423 RNA-Seq PAIRED SRP155436 PRJNA483070 118024 1 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637649 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637649 GSM3317414 SRA750217 SRX4501193 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 2 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637650 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637650 GSM3317415 SRA750217 SRX4501194 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 3 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637651 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637651 GSM3317416 SRA750217 SRX4501195 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 4 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637652 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637652 GSM3317417 SRA750217 SRX4501196 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 5 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637653 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637653 GSM3317418 SRA750217 SRX4501197 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 6 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637654 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637654 GSM3317419 SRA750217 SRX4501198 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 7 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637655 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637655 GSM3317420 SRA750217 SRX4501199 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 8 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637656 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007458/SRR7637656 GSM3317421 SRA750217 SRX4501200 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 9 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637657 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637657 GSM3317422 SRA750217 SRX4501201 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 10 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637658 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637658 GSM3317423 SRA750217 SRX4501202 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 11 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637659 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637659 GSM3317424 SRA750217 SRX4501203 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 12 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637660 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637660 GSM3317425 SRA750217 SRX4501204 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 13 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637661 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637661 GSM3317426 SRA750217 SRX4501205 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 14 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637662 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637662 GSM3317427 SRA750217 SRX4501206 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 15 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637663 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637663 GSM3317428 SRA750217 SRX4501207 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 16 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637664 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637664 GSM3317429 SRA750217 SRX4501208 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 17 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637665 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637665 GSM3317430 SRA750217 SRX4501209 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 18 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637666 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637666 GSM3317431 SRA750217 SRX4501210 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 19 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637667 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637667 GSM3317432 SRA750217 SRX4501211 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 20 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637668 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637668 GSM3317433 SRA750217 SRX4501212 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 21 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637669 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007458/SRR7637669 GSM3317434 SRA750217 SRX4501213 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 22 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637670 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637670 GSM3317435 SRA750217 SRX4501214 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 23 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637671 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637671 GSM3317436 SRA750217 SRX4501215 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 24 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637672 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637672 GSM3317437 SRA750217 SRX4501216 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 25 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637673 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637673 GSM3317438 SRA750217 SRX4501217 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 26 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637674 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007458/SRR7637674 GSM3317439 SRA750217 SRX4501218 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 27 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637675 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637675 GSM3317440 SRA750217 SRX4501219 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 28 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637676 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637676 GSM3317441 SRA750217 SRX4501220 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 29 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637677 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007458/SRR7637677 GSM3317442 SRA750217 SRX4501221 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 30 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637678 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637678 GSM3317443 SRA750217 SRX4501222 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 31 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637679 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637679 GSM3317444 SRA750217 SRX4501223 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 32 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637680 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637680 GSM3317445 SRA750217 SRX4501224 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 33 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637681 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637681 GSM3317446 SRA750217 SRX4501225 RNA-Seq SINGLE SRP156130 PRJNA484112 118024 34 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637682 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637682 GSM3317447 SRA750217 SRX4501226 ChIP-Seq SINGLE SRP156130 PRJNA484112 118024 35 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637683 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007458/SRR7637683 GSM3317448 SRA750217 SRX4501227 ChIP-Seq SINGLE SRP156130 PRJNA484112 118024 36 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637684 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/007458/SRR7637684 GSM3317449 SRA750217 SRX4501228 ChIP-Seq SINGLE SRP156130 PRJNA484112 118024 37 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR7637685 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007458/SRR7637685 GSM3317450 SRA750217 SRX4501229 ChIP-Seq SINGLE SRP156130 PRJNA484112 118024 38 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR8661030 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/008458/SRR8661030 GSM3638163 SRA750217 SRX5458167 ChIP-Seq PAIRED SRP156130 PRJNA484112 118024 39 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody. Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study. GSM2263590 and GSM2263598 used to generate: GSE118024_foxh1_IDR_optimal_peaks.bed.gz GSM2263598 used to generate: GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz 31167141 55999 SRP156130 SRR8661031 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/008458/SRR8661031 GSM3638164 SRA750217 SRX5458168 ChIP-Seq PAIRED SRP156130 PRJNA484112 118382 1 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665341 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665341 GSM3326039 SRA756671 SRX4525909 RNA-Seq PAIRED SRP156967 PRJNA485371 118382 2 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665342 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665342 GSM3326040 SRA756671 SRX4525910 RNA-Seq PAIRED SRP156967 PRJNA485371 118382 3 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665343 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665343 GSM3326041 SRA756671 SRX4525911 RNA-Seq PAIRED SRP156967 PRJNA485371 118382 4 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665344 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665344 GSM3326042 SRA756671 SRX4525912 RNA-Seq PAIRED SRP156967 PRJNA485371 118382 5 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665345 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665345 GSM3326043 SRA756671 SRX4525913 RNA-Seq PAIRED SRP156967 PRJNA485371 118382 6 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665346 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665346 GSM3326044 SRA756671 SRX4525914 RNA-Seq PAIRED SRP156967 PRJNA485371 118382 7 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665347 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665347 GSM3326045 SRA756671 SRX4525915 RNA-Seq PAIRED SRP156967 PRJNA485371 118382 8 Taejoon Kwon Xenopus hybrids provide insight into cell and organism size control Determining how size is controlled is a fundamental question in biology that is poorly understood at the organismal, cellular and subcellular levels. Taejoon Kwon, Romain Gibeaux, Kelly Miller, Rachael Acker, Rebecca Heald Collect mRNA from whole embryos; three biological replicates were analyzed 30564147 55549 SRP156967 SRR7665348 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007485/SRR7665348 GSM3326046 SRA756671 SRX4525916 RNA-Seq PAIRED SRP156967 PRJNA485371 118454 1 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687956 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687956 GSM3330437 SRA757532 SRX4548331 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 2 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687957 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687957 GSM3330438 SRA757532 SRX4548332 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 3 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687958 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687958 GSM3330439 SRA757532 SRX4548333 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 4 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687959 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687959 GSM3330440 SRA757532 SRX4548334 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 5 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687960 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687960 GSM3330441 SRA757532 SRX4548335 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 6 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687961 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687961 GSM3330442 SRA757532 SRX4548336 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 7 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687962 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687962 GSM3330443 SRA757532 SRX4548337 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 8 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687963 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687963 GSM3330444 SRA757532 SRX4548338 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 9 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687964 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687964 GSM3330445 SRA757532 SRX4548339 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 10 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687965 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687965 GSM3330446 SRA757532 SRX4548340 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 11 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687966 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687966 GSM3330447 SRA757532 SRX4548341 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 12 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687967 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687967 GSM3330448 SRA757532 SRX4548342 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 13 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687968 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687968 GSM3330449 SRA757532 SRX4548343 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 14 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687969 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687969 GSM3330450 SRA757532 SRX4548344 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 15 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687970 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687970 GSM3330451 SRA757532 SRX4548345 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 16 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687971 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687971 GSM3330452 SRA757532 SRX4548346 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 17 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687972 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687972 GSM3330453 SRA757532 SRX4548347 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 18 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687973 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687973 GSM3330454 SRA757532 SRX4548348 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 19 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687974 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687974 GSM3330455 SRA757532 SRX4548349 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 20 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687975 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687975 GSM3330456 SRA757532 SRX4548350 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 21 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687976 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687976 GSM3330457 SRA757532 SRX4548351 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 22 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687977 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687977 GSM3330458 SRA757532 SRX4548352 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 23 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687978 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687978 GSM3330459 SRA757532 SRX4548353 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 24 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687979 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687979 GSM3330461 SRA757532 SRX4548354 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 25 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687980 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687980 GSM3330462 SRA757532 SRX4548355 RNA-Seq SINGLE SRP157614 PRJNA485703 118454 26 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema) 30404012 55432 SRP157614 SRR7687981 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/007507/SRR7687981 GSM3330463 SRA757532 SRX4548356 RNA-Seq SINGLE SRP157614 PRJNA485703 119124 1 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761189 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761189 GSM3358737 SRA763838 SRX4616812 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 2 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761190 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761190 GSM3358738 SRA763838 SRX4616813 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 3 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761191 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761191 GSM3358739 SRA763838 SRX4616814 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 4 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761192 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761192 GSM3358740 SRA763838 SRX4616815 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 5 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761193 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761193 GSM3358741 SRA763838 SRX4616816 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 6 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761194 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761194 GSM3358742 SRA763838 SRX4616817 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 7 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761195 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761195 GSM3358743 SRA763838 SRX4616818 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 8 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761196 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761196 GSM3358744 SRA763838 SRX4616819 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 9 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761197 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761197 GSM3358745 SRA763838 SRX4616820 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 10 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761198 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761198 GSM3358746 SRA763838 SRX4616821 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 11 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761199 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761199 GSM3358747 SRA763838 SRX4616822 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 12 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761200 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761200 GSM3358748 SRA763838 SRX4616823 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 13 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761201 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761201 GSM3358749 SRA763838 SRX4616824 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 14 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761202 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761202 GSM3358750 SRA763838 SRX4616825 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 15 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761203 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761203 GSM3358751 SRA763838 SRX4616826 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 16 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761204 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761204 GSM3358752 SRA763838 SRX4616827 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 17 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761205 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761205 GSM3358753 SRA763838 SRX4616828 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 18 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761206 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761206 GSM3358754 SRA763838 SRX4616829 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 19 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761207 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761207 GSM3358755 SRA763838 SRX4616830 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 20 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761208 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761208 GSM3358756 SRA763838 SRX4616831 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 21 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761209 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761209 GSM3358757 SRA763838 SRX4616832 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 22 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761210 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761210 GSM3358758 SRA763838 SRX4616833 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 23 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761211 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761211 GSM3358759 SRA763838 SRX4616834 RNA-Seq SINGLE SRP159000 PRJNA488225 119124 24 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 SRR7761212 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/007579/SRR7761212 GSM3358760 SRA763838 SRX4616835 RNA-Seq SINGLE SRP159000 PRJNA488225 122551 1 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189090 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189090 GSM3473720 SRA809630 SRX5008749 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 2 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189091 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189091 GSM3473721 SRA809630 SRX5008750 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 3 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189092 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189092 GSM3473722 SRA809630 SRX5008751 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 4 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189093 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189093 GSM3473723 SRA809630 SRX5008752 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 5 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189094 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189094 GSM3473724 SRA809630 SRX5008753 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 6 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189095 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189095 GSM3473725 SRA809630 SRX5008754 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 7 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189096 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189096 GSM3473726 SRA809630 SRX5008755 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 8 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189097 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189097 GSM3473727 SRA809630 SRX5008756 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 9 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189098 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189098 GSM3473728 SRA809630 SRX5008757 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 10 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189099 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189099 GSM3473729 SRA809630 SRX5008758 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 11 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189100 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189100 GSM3473730 SRA809630 SRX5008759 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 12 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189101 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189101 GSM3473731 SRA809630 SRX5008760 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 13 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189102 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189102 GSM3473732 SRA809630 SRX5008761 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 14 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189103 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189103 GSM3473733 SRA809630 SRX5008762 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 15 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189104 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189104 GSM3473734 SRA809630 SRX5008763 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 16 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189105 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189105 GSM3473735 SRA809630 SRX5008764 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 17 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189106 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189106 GSM3473736 SRA809630 SRX5008765 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 18 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189107 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189107 GSM3473737 SRA809630 SRX5008766 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 19 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189108 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189108 GSM3473738 SRA809630 SRX5008767 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 20 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189109 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189109 GSM3473739 SRA809630 SRX5008768 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 21 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189110 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189110 GSM3473740 SRA809630 SRX5008769 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 22 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189111 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189111 GSM3473741 SRA809630 SRX5008770 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 23 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189112 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189112 GSM3473742 SRA809630 SRX5008771 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 24 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189113 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189113 GSM3473743 SRA809630 SRX5008772 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 25 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189114 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189114 GSM3473744 SRA809630 SRX5008773 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 26 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189115 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189115 GSM3473745 SRA809630 SRX5008774 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 27 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189116 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189116 GSM3473746 SRA809630 SRX5008775 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 28 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189117 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189117 GSM3473747 SRA809630 SRX5008776 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 29 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189118 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189118 GSM3473748 SRA809630 SRX5008777 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 30 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189119 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189119 GSM3473749 SRA809630 SRX5008778 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 31 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189120 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189120 GSM3473750 SRA809630 SRX5008779 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 32 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189121 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189121 GSM3473751 SRA809630 SRX5008780 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 33 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189122 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189122 GSM3473752 SRA809630 SRX5008781 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 34 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189123 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189123 GSM3473753 SRA809630 SRX5008782 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 35 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189124 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189124 GSM3473754 SRA809630 SRX5008783 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 36 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189125 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189125 GSM3473755 SRA809630 SRX5008784 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 37 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189126 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189126 GSM3473756 SRA809630 SRX5008785 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 38 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189127 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189127 GSM3473757 SRA809630 SRX5008786 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 39 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189128 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189128 GSM3473758 SRA809630 SRX5008787 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 40 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189129 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189129 GSM3473759 SRA809630 SRX5008788 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 41 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189130 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189130 GSM3473760 SRA809630 SRX5008789 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 42 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189131 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189131 GSM3473761 SRA809630 SRX5008790 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 43 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189132 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189132 GSM3473762 SRA809630 SRX5008791 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 44 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189133 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189133 GSM3473763 SRA809630 SRX5008792 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 45 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189134 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189134 GSM3473764 SRA809630 SRX5008793 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 46 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189135 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189135 GSM3473765 SRA809630 SRX5008794 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 47 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189136 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189136 GSM3473766 SRA809630 SRX5008795 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 48 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189137 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189137 GSM3473767 SRA809630 SRX5008796 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 49 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189138 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189138 GSM3473768 SRA809630 SRX5008797 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 50 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189139 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189139 GSM3473769 SRA809630 SRX5008798 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 51 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189140 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189140 GSM3473770 SRA809630 SRX5008799 RNA-Seq PAIRED SRP168643 PRJNA505537 122551 52 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 SRR8189141 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/007997/SRR8189141 GSM3473771 SRA809630 SRX5008800 RNA-Seq PAIRED SRP168643 PRJNA505537 124168 1 Cei Abreu-Goodger Axonal precursor miRNAs hitchhike on endosomes and locally regulate the development of neural circuits Various species of non-coding RNAs (ncRNAs) are enriched in subcellular compartments but the mechanisms orchestrating their localization and their loc Cei Abreu-Goodger, Eloina Corradi, Irene Dalla Costa, Antoneta Gavoci, Archana Iyer, Michela Roccuzzo, Tegan Otto, Eleonora Oliani, Simone Bridi, Stephanie Strohbuecker, Gabriela Santos-Rodriguez, Donatella Valdembri, Guido Serini, Marie-Laure Baudet Total RNA profile were obtained from isolated retinal ganglion cell axons from Xenopus laevis retinal eye cultures using RNA-sequencing 32073171 57123 SRP174009 SRR8358349 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008162/SRR8358349 GSM3523319 SRA825551 SRX5169111 RNA-Seq PAIRED SRP174009 PRJNA510932 124563 1 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384741 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008188/SRR8384741 GSM3536579 SRA829329 SRX5194600 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 2 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384742 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384742/SRR8384742.1 GSM3536580 SRA829329 SRX5194601 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 3 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384743 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008188/SRR8384743 GSM3536581 SRA829329 SRX5194602 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 4 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384744 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008188/SRR8384744 GSM3536582 SRA829329 SRX5194603 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 5 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384745 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384745/SRR8384745.1 GSM3536583 SRA829329 SRX5194604 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 6 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384746 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384746/SRR8384746.1 GSM3536584 SRA829329 SRX5194605 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 7 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384747 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384747/SRR8384747.1 GSM3536585 SRA829329 SRX5194606 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 8 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384748 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384748/SRR8384748.1 GSM3536586 SRA829329 SRX5194607 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 9 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384749 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384749/SRR8384749.1 GSM3536587 SRA829329 SRX5194608 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 10 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384750 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384750/SRR8384750.1 GSM3536588 SRA829329 SRX5194609 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 11 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384751 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384751/SRR8384751.1 GSM3536589 SRA829329 SRX5194610 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 12 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384752 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008188/SRR8384752 GSM3536590 SRA829329 SRX5194611 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 13 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384753 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384753/SRR8384753.1 GSM3536591 SRA829329 SRX5194612 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 14 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384754 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384754/SRR8384754.1 GSM3536592 SRA829329 SRX5194613 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 15 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384755 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384755/SRR8384755.1 GSM3536593 SRA829329 SRX5194614 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 16 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384756 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008188/SRR8384756 GSM3536594 SRA829329 SRX5194615 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 17 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384757 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384757/SRR8384757.1 GSM3536595 SRA829329 SRX5194616 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 18 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384758 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384758/SRR8384758.1 GSM3536596 SRA829329 SRX5194617 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 19 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384759 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384759/SRR8384759.1 GSM3536597 SRA829329 SRX5194618 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 20 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384760 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008188/SRR8384760 GSM3536598 SRA829329 SRX5194619 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 21 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384761 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384761/SRR8384761.1 GSM3536599 SRA829329 SRX5194620 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 22 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384762 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008188/SRR8384762 GSM3536600 SRA829329 SRX5194621 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 23 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384763 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384763/SRR8384763.1 GSM3536601 SRA829329 SRX5194622 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 24 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384764 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384764/SRR8384764.1 GSM3536602 SRA829329 SRX5194623 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 25 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384765 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384765/SRR8384765.1 GSM3536603 SRA829329 SRX5194624 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 26 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384766 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384766/SRR8384766.1 GSM3536604 SRA829329 SRX5194625 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 27 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384767 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384767/SRR8384767.1 GSM3536605 SRA829329 SRX5194627 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 28 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384768 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384768/SRR8384768.1 GSM3536606 SRA829329 SRX5194628 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 29 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384769 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384769/SRR8384769.1 GSM3536607 SRA829329 SRX5194629 RNA-Seq SINGLE SRP175030 PRJNA512511 124563 30 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 SRR8384770 https://sra-download.ncbi.nlm.nih.gov/sos/sra-pub-run-2/SRR8384770/SRR8384770.1 GSM3536608 SRA829329 SRX5194630 RNA-Seq SINGLE SRP175030 PRJNA512511 125982 1 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515029 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515029 GSM3587279 SRA842485 SRX5318616 ChIP-Seq PAIRED SRP183098 PRJNA518148 125982 2 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515030 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515030 GSM3587280 SRA842485 SRX5318617 ChIP-Seq PAIRED SRP183098 PRJNA518148 125982 3 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515031 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515031 GSM3587281 SRA842485 SRX5318618 ChIP-Seq PAIRED SRP183098 PRJNA518148 125982 4 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515032 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515032 GSM3587282 SRA842485 SRX5318619 ChIP-Seq PAIRED SRP183098 PRJNA518148 125982 5 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515033 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515033 GSM3587283 SRA842485 SRX5318620 ChIP-Seq PAIRED SRP183098 PRJNA518148 125982 6 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515034 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515034 GSM3587284 SRA842485 SRX5318621 ChIP-Seq PAIRED SRP183098 PRJNA518148 125982 7 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515035 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515035 GSM3587285 SRA842485 SRX5318622 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 8 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515036 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515036 GSM3587286 SRA842485 SRX5318623 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 9 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515037 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515037 GSM3587287 SRA842485 SRX5318624 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 10 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515038 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515038 GSM3587288 SRA842485 SRX5318625 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 11 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515039 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515039 GSM3587289 SRA842485 SRX5318626 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 12 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515040 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515040 GSM3587290 SRA842485 SRX5318627 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 13 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515041 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515041 GSM3587291 SRA842485 SRX5318628 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 14 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515042 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515042 GSM3587292 SRA842485 SRX5318629 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 15 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515043 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515043 GSM3587293 SRA842485 SRX5318630 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 16 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515044 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515044 GSM3587294 SRA842485 SRX5318631 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 17 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515045 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515045 GSM3587295 SRA842485 SRX5318632 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 18 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515046 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515046 GSM3587296 SRA842485 SRX5318633 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 19 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515047 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515047 GSM3587297 SRA842485 SRX5318634 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 20 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515048 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515048 GSM3587298 SRA842485 SRX5318635 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 21 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515049 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515049 GSM3587299 SRA842485 SRX5318636 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 22 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515050 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515050 GSM3587300 SRA842485 SRX5318637 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 23 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515051 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515051 GSM3587301 SRA842485 SRX5318638 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 24 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515052 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515052 GSM3587302 SRA842485 SRX5318639 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 25 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515053 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515053 GSM3587303 SRA842485 SRX5318640 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 26 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515054 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515054 GSM3587304 SRA842485 SRX5318641 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 27 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515055 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515055 GSM3587305 SRA842485 SRX5318642 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 28 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515056 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515056 GSM3587306 SRA842485 SRX5318643 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 29 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515057 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515057 GSM3587307 SRA842485 SRX5318644 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 30 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8515058 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008315/SRR8515058 GSM3587308 SRA842485 SRX5318645 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 31 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8730286 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/008525/SRR8730286 GSM3671366 SRA842485 SRX5523278 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 32 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8730287 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/008525/SRR8730287 GSM3671367 SRA842485 SRX5523279 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 33 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8730288 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008525/SRR8730288 GSM3671368 SRA842485 SRX5523280 ChIP-Seq SINGLE SRP183098 PRJNA518148 125982 34 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down. ------------------------------------------------- *The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them". Thus, this submission is incomplete. 0 57326 SRP183098 SRR8730289 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008525/SRR8730289 GSM3671369 SRA842485 SRX5523281 ChIP-Seq SINGLE SRP183098 PRJNA518148 126058 1 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527274 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527274 GSM3589901 SRA843840 SRX5330019 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 2 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527275 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527275 GSM3589902 SRA843840 SRX5330020 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 3 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527276 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527276 GSM3589903 SRA843840 SRX5330021 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 4 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527277 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527277 GSM3589904 SRA843840 SRX5330022 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 5 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527278 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527278 GSM3589905 SRA843840 SRX5330023 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 6 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527279 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527279 GSM3589906 SRA843840 SRX5330024 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 7 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527280 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527280 GSM3589907 SRA843840 SRX5330025 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 8 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527281 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527281 GSM3589908 SRA843840 SRX5330026 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 9 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527282 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527282 GSM3589909 SRA843840 SRX5330027 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 10 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527283 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527283 GSM3589910 SRA843840 SRX5330028 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 11 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527284 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527284 GSM3589911 SRA843840 SRX5330029 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 12 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527285 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527285 GSM3589912 SRA843840 SRX5330030 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 13 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527286 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527286 GSM3589913 SRA843840 SRX5330031 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 14 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527287 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527287 GSM3589914 SRA843840 SRX5330032 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 15 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527288 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527288 GSM3589915 SRA843840 SRX5330033 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 16 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527289 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527289 GSM3589916 SRA843840 SRX5330034 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 17 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527290 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527290 GSM3589917 SRA843840 SRX5330035 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 18 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527291 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527291 GSM3589918 SRA843840 SRX5330036 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 19 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527292 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527292 GSM3589919 SRA843840 SRX5330037 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 20 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527293 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527293 GSM3589920 SRA843840 SRX5330038 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 21 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527294 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527294 GSM3589921 SRA843840 SRX5330039 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 22 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527295 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527295 GSM3589922 SRA843840 SRX5330040 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 23 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527296 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527296 GSM3589923 SRA843840 SRX5330041 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 24 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527297 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527297 GSM3589924 SRA843840 SRX5330042 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 25 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527298 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527298 GSM3589925 SRA843840 SRX5330043 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 26 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527299 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527299 GSM3589926 SRA843840 SRX5330044 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 27 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527300 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527300 GSM3589927 SRA843840 SRX5330045 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 28 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527301 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527301 GSM3589928 SRA843840 SRX5330046 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 29 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527302 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527302 GSM3589929 SRA843840 SRX5330047 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 30 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527303 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527303 GSM3589930 SRA843840 SRX5330048 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 31 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527304 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527304 GSM3589931 SRA843840 SRX5330049 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 32 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527305 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527305 GSM3589932 SRA843840 SRX5330050 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 33 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527306 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527306 GSM3589933 SRA843840 SRX5330051 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 34 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527307 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527307 GSM3589934 SRA843840 SRX5330052 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 35 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527308 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527308 GSM3589935 SRA843840 SRX5330053 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 36 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527309 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527309 GSM3589936 SRA843840 SRX5330054 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 37 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527310 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527310 GSM3589937 SRA843840 SRX5330055 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 38 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527311 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527311 GSM3589938 SRA843840 SRX5330056 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 39 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527312 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527312 GSM3589939 SRA843840 SRX5330057 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 40 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527313 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527313 GSM3589940 SRA843840 SRX5330058 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 41 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527314 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527314 GSM3589941 SRA843840 SRX5330059 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 42 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527315 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527315 GSM3589942 SRA843840 SRX5330060 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 43 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527316 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527316 GSM3589943 SRA843840 SRX5330061 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 44 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527317 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527317 GSM3589944 SRA843840 SRX5330062 RNA-Seq SINGLE SRP183483 PRJNA520892 126058 45 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41. Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls. 31846624 56559 SRP183483 SRR8527318 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/008327/SRR8527318 GSM3589945 SRA843840 SRX5330063 RNA-Seq SINGLE SRP183483 PRJNA520892 130448 1 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986263 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008775/SRR8986263 GSM3738794 SRA880624 SRX5765493 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 2 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986264 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008775/SRR8986264 GSM3738794 SRA880624 SRX5765493 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 3 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986265 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008775/SRR8986265 GSM3738795 SRA880624 SRX5765494 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 4 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986266 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/008775/SRR8986266 GSM3738795 SRA880624 SRX5765494 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 5 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986267 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008775/SRR8986267 GSM3738796 SRA880624 SRX5765495 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 6 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986268 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008775/SRR8986268 GSM3738796 SRA880624 SRX5765495 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 7 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986269 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/008775/SRR8986269 GSM3738797 SRA880624 SRX5765496 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 8 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986270 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/008775/SRR8986270 GSM3738797 SRA880624 SRX5765496 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 9 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986271 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008775/SRR8986271 GSM3738798 SRA880624 SRX5765497 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 10 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986272 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008775/SRR8986272 GSM3738798 SRA880624 SRX5765497 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 11 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986273 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/008775/SRR8986273 GSM3738799 SRA880624 SRX5765498 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 12 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986274 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008775/SRR8986274 GSM3738799 SRA880624 SRX5765498 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 13 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986275 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008775/SRR8986275 GSM3738800 SRA880624 SRX5765499 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 14 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986276 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008775/SRR8986276 GSM3738800 SRA880624 SRX5765499 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 15 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986277 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/008775/SRR8986277 GSM3738801 SRA880624 SRX5765500 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 16 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986278 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008775/SRR8986278 GSM3738801 SRA880624 SRX5765500 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 17 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986279 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/008775/SRR8986279 GSM3738802 SRA880624 SRX5765501 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 18 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986280 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008775/SRR8986280 GSM3738802 SRA880624 SRX5765501 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 19 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986281 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/008775/SRR8986281 GSM3738803 SRA880624 SRX5765502 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 20 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986282 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/008775/SRR8986282 GSM3738803 SRA880624 SRX5765502 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 21 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986283 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/008775/SRR8986283 GSM3738804 SRA880624 SRX5765503 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 22 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986284 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008775/SRR8986284 GSM3738804 SRA880624 SRX5765503 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 23 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986285 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008775/SRR8986285 GSM3738805 SRA880624 SRX5765504 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 24 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986286 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/008775/SRR8986286 GSM3738805 SRA880624 SRX5765504 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 25 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986287 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/008775/SRR8986287 GSM3738806 SRA880624 SRX5765505 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 26 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986288 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008775/SRR8986288 GSM3738806 SRA880624 SRX5765505 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 27 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986289 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/008775/SRR8986289 GSM3738807 SRA880624 SRX5765506 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 28 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986290 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/008775/SRR8986290 GSM3738807 SRA880624 SRX5765506 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 29 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986291 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008775/SRR8986291 GSM3738808 SRA880624 SRX5765507 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 30 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986292 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/008775/SRR8986292 GSM3738808 SRA880624 SRX5765507 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 31 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986293 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/008775/SRR8986293 GSM3738809 SRA880624 SRX5765508 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 32 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986294 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/008775/SRR8986294 GSM3738809 SRA880624 SRX5765508 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 33 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986295 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008775/SRR8986295 GSM3738810 SRA880624 SRX5765509 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 34 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986296 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008775/SRR8986296 GSM3738810 SRA880624 SRX5765509 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 35 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986297 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/008775/SRR8986297 GSM3738811 SRA880624 SRX5765510 RNA-Seq PAIRED SRP194164 PRJNA540273 130448 36 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples. 31553905 56304 SRP194164 SRR8986298 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/008775/SRR8986298 GSM3738811 SRA880624 SRX5765510 RNA-Seq PAIRED SRP194164 PRJNA540273 130816 1 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046652 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/008834/SRR9046652 GSM3754697 SRA885609 SRX5823191 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 2 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046653 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008834/SRR9046653 GSM3754698 SRA885609 SRX5823192 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 3 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046654 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/008834/SRR9046654 GSM3754699 SRA885609 SRX5823193 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 4 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046655 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008834/SRR9046655 GSM3754700 SRA885609 SRX5823194 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 5 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046656 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008834/SRR9046656 GSM3754701 SRA885609 SRX5823195 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 6 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046657 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008834/SRR9046657 GSM3754702 SRA885609 SRX5823196 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 7 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046658 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008834/SRR9046658 GSM3754703 SRA885609 SRX5823197 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 8 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046659 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008834/SRR9046659 GSM3754704 SRA885609 SRX5823198 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 9 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046660 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008834/SRR9046660 GSM3754705 SRA885609 SRX5823199 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 10 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046661 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008834/SRR9046661 GSM3754706 SRA885609 SRX5823200 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 11 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046662 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008834/SRR9046662 GSM3754707 SRA885609 SRX5823201 RNA-Seq SINGLE SRP198181 PRJNA542536 130816 12 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted. 31316462 56139 SRP198181 SRR9046663 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008834/SRR9046663 GSM3754708 SRA885609 SRX5823202 RNA-Seq SINGLE SRP198181 PRJNA542536 131962 1 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160380 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008945/SRR9160380 GSM3832849 SRA892086 SRX5933458 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 2 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160381 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008945/SRR9160381 GSM3832849 SRA892086 SRX5933458 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 3 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160382 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008945/SRR9160382 GSM3832849 SRA892086 SRX5933458 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 4 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160383 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008945/SRR9160383 GSM3832849 SRA892086 SRX5933458 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 5 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160384 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008945/SRR9160384 GSM3832850 SRA892086 SRX5933459 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 6 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160385 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/008945/SRR9160385 GSM3832850 SRA892086 SRX5933459 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 7 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160386 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008945/SRR9160386 GSM3832850 SRA892086 SRX5933459 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 8 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160387 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008945/SRR9160387 GSM3832850 SRA892086 SRX5933459 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 9 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160388 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008945/SRR9160388 GSM3832851 SRA892086 SRX5933460 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 10 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160389 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008945/SRR9160389 GSM3832851 SRA892086 SRX5933460 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 11 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160390 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008945/SRR9160390 GSM3832851 SRA892086 SRX5933460 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 12 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160391 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008945/SRR9160391 GSM3832851 SRA892086 SRX5933460 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 13 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160392 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008945/SRR9160392 GSM3832852 SRA892086 SRX5933461 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 14 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160393 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008945/SRR9160393 GSM3832852 SRA892086 SRX5933461 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 15 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160394 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008945/SRR9160394 GSM3832852 SRA892086 SRX5933461 RNA-Seq PAIRED SRP199866 PRJNA545469 131962 16 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 SRR9160395 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008945/SRR9160395 GSM3832852 SRA892086 SRX5933461 RNA-Seq PAIRED SRP199866 PRJNA545469 132116 1 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186334 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/008971/SRR9186334 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 2 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186335 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/008971/SRR9186335 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 3 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186336 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/008971/SRR9186336 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 4 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186337 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/008971/SRR9186337 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 5 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186338 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/008971/SRR9186338 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 6 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186339 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/008971/SRR9186339 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 7 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186340 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/008971/SRR9186340 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 8 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186341 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186341 GSM3844820 SRA893482 SRX5958820 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 9 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186342 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186342 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 10 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186343 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/008971/SRR9186343 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 11 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186344 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008971/SRR9186344 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 12 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186345 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186345 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 13 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186346 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/008971/SRR9186346 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 14 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186347 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/008971/SRR9186347 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 15 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186348 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008971/SRR9186348 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 16 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186349 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008971/SRR9186349 GSM3844821 SRA893482 SRX5958821 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 17 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186350 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/008971/SRR9186350 GSM3844822 SRA893482 SRX5958822 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 18 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186351 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/008971/SRR9186351 GSM3844822 SRA893482 SRX5958822 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 19 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186352 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/008971/SRR9186352 GSM3844822 SRA893482 SRX5958822 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 20 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186353 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186353 GSM3844822 SRA893482 SRX5958822 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 21 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186354 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/008971/SRR9186354 GSM3844822 SRA893482 SRX5958822 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 22 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186355 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/008971/SRR9186355 GSM3844822 SRA893482 SRX5958822 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 23 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186356 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/008971/SRR9186356 GSM3844823 SRA893482 SRX5958823 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 24 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186357 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/008971/SRR9186357 GSM3844823 SRA893482 SRX5958823 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 25 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186358 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/008971/SRR9186358 GSM3844823 SRA893482 SRX5958823 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 26 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186359 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/008971/SRR9186359 GSM3844823 SRA893482 SRX5958823 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 27 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186360 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/008971/SRR9186360 GSM3844823 SRA893482 SRX5958823 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 28 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186361 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008971/SRR9186361 GSM3844823 SRA893482 SRX5958823 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 29 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186362 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008971/SRR9186362 GSM3844824 SRA893482 SRX5958824 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 30 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186363 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186363 GSM3844824 SRA893482 SRX5958824 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 31 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186364 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/008971/SRR9186364 GSM3844824 SRA893482 SRX5958824 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 32 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186365 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186365 GSM3844824 SRA893482 SRX5958824 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 33 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186366 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186366 GSM3844824 SRA893482 SRX5958824 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 34 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186367 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186367 GSM3844824 SRA893482 SRX5958824 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 35 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186368 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186368 GSM3844824 SRA893482 SRX5958824 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 36 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186369 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186369 GSM3844825 SRA893482 SRX5958825 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 37 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186370 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008971/SRR9186370 GSM3844825 SRA893482 SRX5958825 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 38 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186371 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186371 GSM3844825 SRA893482 SRX5958825 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 39 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186372 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/008971/SRR9186372 GSM3844825 SRA893482 SRX5958825 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 40 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186373 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186373 GSM3844825 SRA893482 SRX5958825 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 41 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186374 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/008971/SRR9186374 GSM3844825 SRA893482 SRX5958825 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 42 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186375 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/008971/SRR9186375 GSM3844825 SRA893482 SRX5958825 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 43 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186376 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008971/SRR9186376 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 44 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186377 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186377 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 45 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186378 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/008971/SRR9186378 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 46 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186379 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/008971/SRR9186379 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 47 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186380 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/008971/SRR9186380 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 48 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186381 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008971/SRR9186381 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 49 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186382 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/008971/SRR9186382 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 50 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186383 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186383 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 51 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186384 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/008971/SRR9186384 GSM3844826 SRA893482 SRX5958826 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 52 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186385 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/008971/SRR9186385 GSM3844827 SRA893482 SRX5958827 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 53 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186386 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/008971/SRR9186386 GSM3844827 SRA893482 SRX5958827 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 54 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186387 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008971/SRR9186387 GSM3844827 SRA893482 SRX5958827 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 55 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186388 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/008971/SRR9186388 GSM3844827 SRA893482 SRX5958827 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 56 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186389 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/008971/SRR9186389 GSM3844827 SRA893482 SRX5958827 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 57 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186390 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186390 GSM3844827 SRA893482 SRX5958827 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 58 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186391 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/008971/SRR9186391 GSM3844827 SRA893482 SRX5958827 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 59 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186392 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008971/SRR9186392 GSM3844828 SRA893482 SRX5958828 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 60 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186393 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186393 GSM3844828 SRA893482 SRX5958828 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 61 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186394 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/008971/SRR9186394 GSM3844828 SRA893482 SRX5958828 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 62 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186395 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/008971/SRR9186395 GSM3844828 SRA893482 SRX5958828 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 63 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186396 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008971/SRR9186396 GSM3844828 SRA893482 SRX5958828 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 64 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186397 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008971/SRR9186397 GSM3844828 SRA893482 SRX5958828 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 65 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186398 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186398 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 66 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186399 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008971/SRR9186399 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 67 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186400 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/008971/SRR9186400 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 68 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186401 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008971/SRR9186401 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 69 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186402 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008971/SRR9186402 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 70 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186403 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008971/SRR9186403 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 71 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186404 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008971/SRR9186404 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 72 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186405 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/008971/SRR9186405 GSM3844829 SRA893482 SRX5958829 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 73 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186406 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/008971/SRR9186406 GSM3844830 SRA893482 SRX5958830 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 74 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186407 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186407 GSM3844830 SRA893482 SRX5958830 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 75 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186408 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008971/SRR9186408 GSM3844830 SRA893482 SRX5958830 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 76 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186409 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008971/SRR9186409 GSM3844830 SRA893482 SRX5958830 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 77 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186410 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/008971/SRR9186410 GSM3844830 SRA893482 SRX5958830 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 78 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186411 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/008971/SRR9186411 GSM3844831 SRA893482 SRX5958831 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 79 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186412 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/008971/SRR9186412 GSM3844831 SRA893482 SRX5958831 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 80 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186413 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/008971/SRR9186413 GSM3844831 SRA893482 SRX5958831 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 81 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186414 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186414 GSM3844831 SRA893482 SRX5958831 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 82 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186415 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/008971/SRR9186415 GSM3844831 SRA893482 SRX5958831 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 83 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186416 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008971/SRR9186416 GSM3844831 SRA893482 SRX5958831 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 84 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186417 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/008971/SRR9186417 GSM3844831 SRA893482 SRX5958831 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 85 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186418 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008971/SRR9186418 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 86 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186419 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186419 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 87 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186420 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/008971/SRR9186420 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 88 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186421 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/008971/SRR9186421 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 89 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186422 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/008971/SRR9186422 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 90 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186423 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186423 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 91 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186424 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008971/SRR9186424 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 92 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186425 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/008971/SRR9186425 GSM3844832 SRA893482 SRX5958832 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 93 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186426 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186426 GSM3844833 SRA893482 SRX5958833 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 94 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186427 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/008971/SRR9186427 GSM3844833 SRA893482 SRX5958833 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 95 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186428 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186428 GSM3844833 SRA893482 SRX5958833 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 96 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186429 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186429 GSM3844833 SRA893482 SRX5958833 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 97 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186430 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186430 GSM3844833 SRA893482 SRX5958833 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 98 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186431 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008971/SRR9186431 GSM3844833 SRA893482 SRX5958833 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 99 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186432 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008971/SRR9186432 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 100 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186433 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186433 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 101 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186434 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186434 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 102 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186435 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/008971/SRR9186435 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 103 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186436 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/008971/SRR9186436 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 104 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186437 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008971/SRR9186437 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 105 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186438 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186438 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 106 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186439 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008971/SRR9186439 GSM3844834 SRA893482 SRX5958834 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 107 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186440 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008971/SRR9186440 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 108 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186441 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008971/SRR9186441 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 109 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186442 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186442 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 110 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186443 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186443 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 111 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186444 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008971/SRR9186444 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 112 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186445 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/008971/SRR9186445 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 113 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186446 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186446 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 114 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186447 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186447 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 115 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186448 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008971/SRR9186448 GSM3844835 SRA893482 SRX5958835 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186449 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186449 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 117 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186450 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/008971/SRR9186450 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 118 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186451 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186451 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 119 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186452 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186452 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 120 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186453 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008971/SRR9186453 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 121 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186454 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/008971/SRR9186454 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 122 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186455 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186455 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 123 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186456 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/008971/SRR9186456 GSM3844836 SRA893482 SRX5958836 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 124 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186457 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/008971/SRR9186457 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 125 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186458 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/008971/SRR9186458 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 126 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186459 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/008971/SRR9186459 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 127 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186460 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/008971/SRR9186460 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 128 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186461 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/008971/SRR9186461 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 129 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186462 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/008971/SRR9186462 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 130 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186463 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186463 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 131 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186464 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/008971/SRR9186464 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 132 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186465 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008971/SRR9186465 GSM3844837 SRA893482 SRX5958837 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 133 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186466 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186466 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 134 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186467 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/008971/SRR9186467 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 135 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186468 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/008971/SRR9186468 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 136 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186469 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/008971/SRR9186469 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 137 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186470 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008971/SRR9186470 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 138 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186471 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/008971/SRR9186471 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 139 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186472 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/008971/SRR9186472 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 140 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186473 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/008971/SRR9186473 GSM3844838 SRA893482 SRX5958838 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 141 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186474 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/008971/SRR9186474 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 142 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186475 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/008971/SRR9186475 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 143 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186476 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/008971/SRR9186476 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 144 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186477 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/008971/SRR9186477 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 145 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186478 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/008971/SRR9186478 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 146 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186479 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008971/SRR9186479 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 147 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186480 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/008971/SRR9186480 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 148 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186481 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/008971/SRR9186481 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 149 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186482 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/008971/SRR9186482 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 150 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186483 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186483 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 151 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186484 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/008971/SRR9186484 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 152 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186485 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/008971/SRR9186485 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 153 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186486 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/008971/SRR9186486 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 154 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186487 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186487 GSM3844839 SRA893482 SRX5958839 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 155 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186488 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008971/SRR9186488 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 156 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186489 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/008971/SRR9186489 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 157 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186490 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/008971/SRR9186490 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 158 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186491 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186491 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 159 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186492 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/008971/SRR9186492 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 160 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186493 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/008971/SRR9186493 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 161 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186494 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/008971/SRR9186494 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 162 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186495 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/008971/SRR9186495 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 163 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186496 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/008971/SRR9186496 GSM3844840 SRA893482 SRX5958840 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 164 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186497 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/008971/SRR9186497 GSM3844841 SRA893482 SRX5958841 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 165 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186498 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/008971/SRR9186498 GSM3844841 SRA893482 SRX5958841 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 166 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186499 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/008971/SRR9186499 GSM3844841 SRA893482 SRX5958841 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 167 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186500 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/008971/SRR9186500 GSM3844841 SRA893482 SRX5958841 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 168 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186501 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/008971/SRR9186501 GSM3844841 SRA893482 SRX5958841 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 169 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186502 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/008971/SRR9186502 GSM3844841 SRA893482 SRX5958841 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 170 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186503 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/008971/SRR9186503 GSM3844841 SRA893482 SRX5958841 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 171 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186504 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/008971/SRR9186504 GSM3844842 SRA893482 SRX5958842 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 172 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186505 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/008971/SRR9186505 GSM3844842 SRA893482 SRX5958842 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 173 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186506 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/008971/SRR9186506 GSM3844842 SRA893482 SRX5958842 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 174 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186507 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/008971/SRR9186507 GSM3844842 SRA893482 SRX5958842 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 175 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186508 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/008971/SRR9186508 GSM3844842 SRA893482 SRX5958842 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 176 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186509 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/008971/SRR9186509 GSM3844842 SRA893482 SRX5958842 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 177 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186510 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/008971/SRR9186510 GSM3844842 SRA893482 SRX5958842 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 178 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186511 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186511 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 179 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186512 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008971/SRR9186512 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 180 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186513 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/008971/SRR9186513 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 181 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186514 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/008971/SRR9186514 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 182 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186515 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/008971/SRR9186515 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 183 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186516 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186516 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 184 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186517 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/008971/SRR9186517 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 185 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186518 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/008971/SRR9186518 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 186 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186519 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/008971/SRR9186519 GSM3844843 SRA893482 SRX5958843 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 187 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186520 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/008971/SRR9186520 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 188 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186521 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/008971/SRR9186521 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 189 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186522 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/008971/SRR9186522 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 190 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186523 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/008971/SRR9186523 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 191 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186524 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/008971/SRR9186524 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 192 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186525 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/008971/SRR9186525 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 193 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186526 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/008971/SRR9186526 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 132116 194 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 SRR9186527 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/008971/SRR9186527 GSM3844844 SRA893482 SRX5958844 RNA-Seq SINGLE SRP200236 PRJNA545973 134537 1 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715854 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/009488/SRR9715854 GSM3955306 SRA923235 SRX6473708 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 2 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715855 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/009488/SRR9715855 GSM3955307 SRA923235 SRX6473709 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 3 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715856 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/009488/SRR9715856 GSM3955308 SRA923235 SRX6473710 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 4 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715857 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/009488/SRR9715857 GSM3955309 SRA923235 SRX6473711 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 5 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715858 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/009488/SRR9715858 GSM3955310 SRA923235 SRX6473712 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 6 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715859 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/009488/SRR9715859 GSM3955311 SRA923235 SRX6473713 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 7 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715860 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/009488/SRR9715860 GSM3955312 SRA923235 SRX6473714 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 8 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715861 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/009488/SRR9715861 GSM3955313 SRA923235 SRX6473715 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 9 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715862 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/009488/SRR9715862 GSM3955314 SRA923235 SRX6473716 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 10 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715863 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/009488/SRR9715863 GSM3955315 SRA923235 SRX6473717 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 11 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715864 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/009488/SRR9715864 GSM3955316 SRA923235 SRX6473718 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 12 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715865 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/009488/SRR9715865 GSM3955317 SRA923235 SRX6473719 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 13 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715866 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/009488/SRR9715866 GSM3955318 SRA923235 SRX6473720 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 14 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715867 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/009488/SRR9715867 GSM3955319 SRA923235 SRX6473721 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 15 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715868 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/009488/SRR9715868 GSM3955320 SRA923235 SRX6473722 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 16 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715869 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/009488/SRR9715869 GSM3955321 SRA923235 SRX6473723 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 17 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715870 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/009488/SRR9715870 GSM3955322 SRA923235 SRX6473724 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 18 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715871 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/009488/SRR9715871 GSM3955323 SRA923235 SRX6473725 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 19 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715872 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/009488/SRR9715872 GSM3955324 SRA923235 SRX6473726 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 20 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715873 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/009488/SRR9715873 GSM3955325 SRA923235 SRX6473727 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 21 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715874 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/009488/SRR9715874 GSM3955326 SRA923235 SRX6473728 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 22 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715875 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/009488/SRR9715875 GSM3955327 SRA923235 SRX6473729 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 23 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715876 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/009488/SRR9715876 GSM3955328 SRA923235 SRX6473730 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 24 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715877 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/009488/SRR9715877 GSM3955329 SRA923235 SRX6473731 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 25 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715878 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/009488/SRR9715878 GSM3955330 SRA923235 SRX6473732 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 26 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715879 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/009488/SRR9715879 GSM3955331 SRA923235 SRX6473733 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 27 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715880 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/009488/SRR9715880 GSM3955332 SRA923235 SRX6473734 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 28 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715881 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/009488/SRR9715881 GSM3955333 SRA923235 SRX6473735 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 29 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715882 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/009488/SRR9715882 GSM3955334 SRA923235 SRX6473736 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 30 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715883 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/009488/SRR9715883 GSM3955335 SRA923235 SRX6473737 RNA-Seq SINGLE SRP215429 PRJNA555524 134537 31 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715884 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/009488/SRR9715884 GSM3955336 SRA923235 SRX6473738 OTHER SINGLE SRP215429 PRJNA555524 134537 32 Michael Blower Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation Changes in gene expression are required to orchestrate changes in cell state during development. Most cells change patterns of gene expression through Michael Blower, Michael Blower poly-A tail lengths and polysome fractions were measured for genome-wide during oocyte maturation in Xenopus laevis 31896558 56611 SRP215429 SRR9715885 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/009488/SRR9715885 GSM3955337 SRA923235 SRX6473739 OTHER SINGLE SRP215429 PRJNA555524 137844 1 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163172 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/009924/SRR10163172 GSM4089657 SRA966374 SRX6888561 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 2 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163173 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/009924/SRR10163173 GSM4089658 SRA966374 SRX6888562 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 3 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163174 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/009924/SRR10163174 GSM4089659 SRA966374 SRX6888563 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 4 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163175 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/009924/SRR10163175 GSM4089660 SRA966374 SRX6888564 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 5 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163176 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/009924/SRR10163176 GSM4089661 SRA966374 SRX6888565 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 6 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163177 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/009924/SRR10163177 GSM4089662 SRA966374 SRX6888566 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 7 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163178 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/009924/SRR10163178 GSM4089663 SRA966374 SRX6888567 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 8 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163179 https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/009924/SRR10163179 GSM4089664 SRA966374 SRX6888568 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 9 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163180 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/009924/SRR10163180 GSM4089665 SRA966374 SRX6888569 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 10 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163181 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/009924/SRR10163181 GSM4089666 SRA966374 SRX6888570 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 11 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163182 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/009924/SRR10163182 GSM4089667 SRA966374 SRX6888571 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 12 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163183 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/009924/SRR10163183 GSM4089668 SRA966374 SRX6888572 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 13 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163184 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/009924/SRR10163184 GSM4089669 SRA966374 SRX6888573 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 14 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163185 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/009924/SRR10163185 GSM4089670 SRA966374 SRX6888574 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 15 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163186 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/009924/SRR10163186 GSM4089671 SRA966374 SRX6888575 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 16 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163187 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/009924/SRR10163187 GSM4089672 SRA966374 SRX6888576 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 17 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163188 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/009924/SRR10163188 GSM4089673 SRA966374 SRX6888577 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 18 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163189 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/009924/SRR10163189 GSM4089674 SRA966374 SRX6888578 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 19 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163190 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/009924/SRR10163190 GSM4089675 SRA966374 SRX6888579 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 20 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163191 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/009924/SRR10163191 GSM4089676 SRA966374 SRX6888580 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 21 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163192 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/009924/SRR10163192 GSM4089677 SRA966374 SRX6888581 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 22 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163193 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/009924/SRR10163193 GSM4089678 SRA966374 SRX6888582 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 23 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163194 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/009924/SRR10163194 GSM4089679 SRA966374 SRX6888583 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 24 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163195 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/009924/SRR10163195 GSM4089680 SRA966374 SRX6888584 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 25 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163196 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/009924/SRR10163196 GSM4089681 SRA966374 SRX6888585 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 26 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163197 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/009924/SRR10163197 GSM4089682 SRA966374 SRX6888586 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 27 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163198 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/009924/SRR10163198 GSM4089683 SRA966374 SRX6888587 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 28 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163199 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/009924/SRR10163199 GSM4089684 SRA966374 SRX6888588 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 29 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163200 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/009925/SRR10163200 GSM4089685 SRA966374 SRX6888589 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 30 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163201 https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/009925/SRR10163201 GSM4089686 SRA966374 SRX6888590 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 31 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163202 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/009925/SRR10163202 GSM4089687 SRA966374 SRX6888591 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 32 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163203 https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/009925/SRR10163203 GSM4089688 SRA966374 SRX6888592 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 33 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163204 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/009925/SRR10163204 GSM4089689 SRA966374 SRX6888593 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 34 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163205 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/009925/SRR10163205 GSM4089690 SRA966374 SRX6888594 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 35 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163206 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/009925/SRR10163206 GSM4089691 SRA966374 SRX6888595 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 36 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163207 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/009925/SRR10163207 GSM4089692 SRA966374 SRX6888596 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 37 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163208 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/009925/SRR10163208 GSM4089693 SRA966374 SRX6888597 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 38 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163209 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/009925/SRR10163209 GSM4089694 SRA966374 SRX6888598 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 39 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163210 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/009925/SRR10163210 GSM4089695 SRA966374 SRX6888599 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 40 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163211 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/009925/SRR10163211 GSM4089696 SRA966374 SRX6888600 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 41 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163212 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/009925/SRR10163212 GSM4089697 SRA966374 SRX6888601 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 42 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163213 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/009925/SRR10163213 GSM4089698 SRA966374 SRX6888602 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 43 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163214 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/009925/SRR10163214 GSM4089699 SRA966374 SRX6888603 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 44 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163215 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/009925/SRR10163215 GSM4089700 SRA966374 SRX6888604 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 45 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163216 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/009925/SRR10163216 GSM4089701 SRA966374 SRX6888605 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 46 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163217 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/009925/SRR10163217 GSM4089702 SRA966374 SRX6888606 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 47 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163218 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/009925/SRR10163218 GSM4089703 SRA966374 SRX6888607 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 48 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163219 https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/009925/SRR10163219 GSM4089704 SRA966374 SRX6888608 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 49 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163220 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/009925/SRR10163220 GSM4089705 SRA966374 SRX6888609 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 50 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163221 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/009925/SRR10163221 GSM4089706 SRA966374 SRX6888610 RNA-Seq SINGLE SRP222957 PRJNA573657 137844 51 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 32758133 57252 SRP222957 SRR10163222 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/009925/SRR10163222 GSM4089707 SRA966374 SRX6888611 RNA-Seq SINGLE SRP222957 PRJNA573657 138303 1 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215912 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/009976/SRR10215912 GSM4105018 SRA971336 SRX6935589 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 2 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215913 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/009976/SRR10215913 GSM4105019 SRA971336 SRX6935590 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 3 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215914 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/009976/SRR10215914 GSM4105020 SRA971336 SRX6935573 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 4 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215915 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/009976/SRR10215915 GSM4105021 SRA971336 SRX6935574 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 5 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215916 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/009976/SRR10215916 GSM4105022 SRA971336 SRX6935575 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 6 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215917 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/009976/SRR10215917 GSM4105023 SRA971336 SRX6935576 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 7 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215918 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/009976/SRR10215918 GSM4105024 SRA971336 SRX6935577 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 8 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215919 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/009976/SRR10215919 GSM4105025 SRA971336 SRX6935578 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 9 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215920 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/009976/SRR10215920 GSM4105026 SRA971336 SRX6935579 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 10 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215921 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/009976/SRR10215921 GSM4105027 SRA971336 SRX6935580 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 11 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215922 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/009976/SRR10215922 GSM4105028 SRA971336 SRX6935581 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 12 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215923 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/009976/SRR10215923 GSM4105029 SRA971336 SRX6935582 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 13 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215924 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/009976/SRR10215924 GSM4105030 SRA971336 SRX6935583 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 14 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215925 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/009976/SRR10215925 GSM4105031 SRA971336 SRX6935584 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 15 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215926 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/009976/SRR10215926 GSM4105032 SRA971336 SRX6935585 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 16 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215927 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/009976/SRR10215927 GSM4105033 SRA971336 SRX6935586 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 17 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215928 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/009976/SRR10215928 GSM4105034 SRA971336 SRX6935587 ATAC-seq PAIRED SRP223949 PRJNA575367 138303 18 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq. Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records. 0 57142 SRP223949 SRR10215929 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/009976/SRR10215929 GSM4105035 SRA971336 SRX6935588 ATAC-seq PAIRED SRP223949 PRJNA575367 138905 1 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 SRR10285468 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/010044/SRR10285468 GSM4121478 SRA979583 SRX6998460 ATAC-seq PAIRED SRP225796 PRJNA577715 138905 2 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 SRR10285469 https://sra-download.ncbi.nlm.nih.gov/traces/sra30/SRR/010044/SRR10285469 GSM4121479 SRA979583 SRX6998461 ATAC-seq PAIRED SRP225796 PRJNA577715 138905 3 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 SRR10285470 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/010044/SRR10285470 GSM4121480 SRA979583 SRX6998462 ATAC-seq PAIRED SRP225796 PRJNA577715 138905 4 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 SRR10285471 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/010044/SRR10285471 GSM4121481 SRA979583 SRX6998463 ATAC-seq PAIRED SRP225796 PRJNA577715 138905 5 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 SRR10285472 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/010044/SRR10285472 GSM4121482 SRA979583 SRX6998464 ATAC-seq PAIRED SRP225796 PRJNA577715 138905 6 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 SRR10285473 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/010044/SRR10285473 GSM4121483 SRA979583 SRX6998465 ATAC-seq PAIRED SRP225796 PRJNA577715 139267 1 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327373 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/010085/SRR10327373 GSM4135833 SRA983503 SRX7037557 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 2 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327374 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/010085/SRR10327374 GSM4135834 SRA983503 SRX7037558 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 3 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327375 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/010085/SRR10327375 GSM4135835 SRA983503 SRX7037559 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 4 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327376 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/010085/SRR10327376 GSM4135836 SRA983503 SRX7037560 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 5 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327377 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/010085/SRR10327377 GSM4135837 SRA983503 SRX7037561 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 6 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327378 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/010085/SRR10327378 GSM4135838 SRA983503 SRX7037562 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 7 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327379 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/010085/SRR10327379 GSM4135839 SRA983503 SRX7037563 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 8 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327380 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/010085/SRR10327380 GSM4135840 SRA983503 SRX7037564 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 9 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327381 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/010085/SRR10327381 GSM4135841 SRA983503 SRX7037565 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 10 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327382 https://sra-download.ncbi.nlm.nih.gov/traces/sra30/SRR/010085/SRR10327382 GSM4135842 SRA983503 SRX7037566 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 11 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327383 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/010085/SRR10327383 GSM4135843 SRA983503 SRX7037567 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 12 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327384 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/010085/SRR10327384 GSM4135844 SRA983503 SRX7037568 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 13 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327385 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/010085/SRR10327385 GSM4135845 SRA983503 SRX7037569 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 14 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327386 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/010085/SRR10327386 GSM4135846 SRA983503 SRX7037570 MBD-Seq SINGLE SRP226648 PRJNA578937 139267 15 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing. 32240642 56853 SRP226648 SRR10327387 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/010085/SRR10327387 GSM4135847 SRA983503 SRX7037571 MBD-Seq SINGLE SRP226648 PRJNA578937 140120 1 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417502 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/010173/SRR10417502 GSM4154616 SRA992784 SRX7115530 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 2 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417503 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/010173/SRR10417503 GSM4154617 SRA992784 SRX7115531 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 3 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417504 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/010173/SRR10417504 GSM4154618 SRA992784 SRX7115532 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 4 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417505 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/010173/SRR10417505 GSM4154619 SRA992784 SRX7115533 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 5 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417506 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/010173/SRR10417506 GSM4154620 SRA992784 SRX7115534 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 6 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417507 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/010173/SRR10417507 GSM4154621 SRA992784 SRX7115535 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 7 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417508 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/010173/SRR10417508 GSM4154622 SRA992784 SRX7115536 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 8 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417509 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/010173/SRR10417509 GSM4154623 SRA992784 SRX7115537 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 9 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417510 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/010173/SRR10417510 GSM4154624 SRA992784 SRX7115538 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 10 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417511 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/010173/SRR10417511 GSM4154625 SRA992784 SRX7115539 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 11 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417512 https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010173/SRR10417512 GSM4154626 SRA992784 SRX7115540 RNA-Seq SINGLE SRP229123 PRJNA588299 140120 12 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing. 32240642 56853 SRP229123 SRR10417513 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/010173/SRR10417513 GSM4154627 SRA992784 SRX7115541 RNA-Seq SINGLE SRP229123 PRJNA588299 143395 1 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859344 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/010604/SRR10859344 GSM4258351 SRA1023079 SRX7529421 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 2 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859345 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/010604/SRR10859345 GSM4258352 SRA1023079 SRX7529422 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 3 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859346 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/010604/SRR10859346 GSM4258353 SRA1023079 SRX7529423 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 4 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859347 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/010604/SRR10859347 GSM4258354 SRA1023079 SRX7529424 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 5 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859348 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010604/SRR10859348 GSM4258355 SRA1023079 SRX7529425 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 6 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859349 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/010604/SRR10859349 GSM4258356 SRA1023079 SRX7529426 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 7 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859350 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010604/SRR10859350 GSM4258357 SRA1023079 SRX7529427 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 8 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859351 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010604/SRR10859351 GSM4258358 SRA1023079 SRX7529428 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 9 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859352 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/010604/SRR10859352 GSM4258359 SRA1023079 SRX7529429 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 10 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859353 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/010604/SRR10859353 GSM4258360 SRA1023079 SRX7529430 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 11 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859354 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/010604/SRR10859354 GSM4258361 SRA1023079 SRX7529431 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 12 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859355 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/010604/SRR10859355 GSM4258362 SRA1023079 SRX7529432 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 13 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859356 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010604/SRR10859356 GSM4258363 SRA1023079 SRX7529433 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 14 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859357 https://sra-download.ncbi.nlm.nih.gov/traces/sra40/SRR/010604/SRR10859357 GSM4258364 SRA1023079 SRX7529434 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 15 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859358 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/010604/SRR10859358 GSM4258365 SRA1023079 SRX7529435 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 16 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859359 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010604/SRR10859359 GSM4258366 SRA1023079 SRX7529436 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 17 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859360 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/010604/SRR10859360 GSM4258367 SRA1023079 SRX7529437 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 18 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859361 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/010604/SRR10859361 GSM4258368 SRA1023079 SRX7529438 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 19 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859362 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/010604/SRR10859362 GSM4258369 SRA1023079 SRX7529439 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 20 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859363 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/010604/SRR10859363 GSM4258370 SRA1023079 SRX7529440 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 21 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859364 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/010604/SRR10859364 GSM4258371 SRA1023079 SRX7529441 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 22 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859365 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/010604/SRR10859365 GSM4258372 SRA1023079 SRX7529442 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 23 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859366 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/010604/SRR10859366 GSM4258373 SRA1023079 SRX7529443 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 24 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859367 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/010604/SRR10859367 GSM4258374 SRA1023079 SRX7529444 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 25 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859368 https://sra-download.ncbi.nlm.nih.gov/traces/sra14/SRR/010604/SRR10859368 GSM4258375 SRA1023079 SRX7529445 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 26 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859369 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/010604/SRR10859369 GSM4258376 SRA1023079 SRX7529446 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 27 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859370 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/010604/SRR10859370 GSM4258377 SRA1023079 SRX7529447 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 28 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859371 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/010604/SRR10859371 GSM4258378 SRA1023079 SRX7529448 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 29 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859372 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/010604/SRR10859372 GSM4258379 SRA1023079 SRX7529449 RNA-Seq PAIRED SRP240958 PRJNA600273 143395 30 Varshini Vasudevaraja Targets of Sf3b4 during neural crest development Mutations in Sf3b4, a component of the spliceosome, have been linked to craniofacial dismorphology known as Nager syndrome. To understand the role Sf3 Varshini Vasudevaraja, Jean-Pierre Saint-Jeannet, Santosh Maharana Xenopus laevis embryos were injected at the 2-cell stage with mRNAs encoding noggin and wnt8 to induce neural crest progenitors. A subset of these embryos were co-injected with Sf3b4MO antisense oligonucleotides to interfere with Sf3b4 fonction during neural crest forrmation. At the blastula stage (stage 8/9), animal cap explants were dissected and cultured for 8 hours in a defined medium. Either two or three biological replicates were performed for each condition. 0 57146 SRP240958 SRR10859373 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/010604/SRR10859373 GSM4258380 SRA1023079 SRX7529450 RNA-Seq PAIRED SRP240958 PRJNA600273 143795 1 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903013 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/010647/SRR10903013 GSM4274726 SRA1027270 SRX7571183 RNA-Seq PAIRED SRP242211 PRJNA601731 143795 2 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903014 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/010647/SRR10903014 GSM4274727 SRA1027270 SRX7571184 RNA-Seq PAIRED SRP242211 PRJNA601731 143795 3 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903015 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/010647/SRR10903015 GSM4274728 SRA1027270 SRX7571185 RNA-Seq PAIRED SRP242211 PRJNA601731 143795 4 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903016 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/010647/SRR10903016 GSM4274729 SRA1027270 SRX7571186 RNA-Seq PAIRED SRP242211 PRJNA601731 143795 5 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903017 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/010647/SRR10903017 GSM4274730 SRA1027270 SRX7571187 RNA-Seq PAIRED SRP242211 PRJNA601731 143795 6 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903018 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/010647/SRR10903018 GSM4274731 SRA1027270 SRX7571188 RNA-Seq PAIRED SRP242211 PRJNA601731 143795 7 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903019 https://sra-download.ncbi.nlm.nih.gov/traces/sra5/SRR/010647/SRR10903019 GSM4274732 SRA1027270 SRX7571189 RNA-Seq PAIRED SRP242211 PRJNA601731 143795 8 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq. 32859582 57304 SRP242211 SRR10903020 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/010647/SRR10903020 GSM4274733 SRA1027270 SRX7571190 RNA-Seq PAIRED SRP242211 PRJNA601731 145619 1 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122354 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122354 GSM4322303 SRA1045163 SRX7759414 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 2 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122355 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122355 GSM4322304 SRA1045163 SRX7759415 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 3 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122356 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122356 GSM4322305 SRA1045163 SRX7759416 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 4 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122357 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/010861/SRR11122357 GSM4322306 SRA1045163 SRX7759417 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 5 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122358 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122358 GSM4322307 SRA1045163 SRX7759418 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 6 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122359 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122359 GSM4322308 SRA1045163 SRX7759419 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 7 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122360 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122360 GSM4322309 SRA1045163 SRX7759420 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 8 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122361 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122361 GSM4322310 SRA1045163 SRX7759421 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 9 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122362 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122362 GSM4322311 SRA1045163 SRX7759422 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 10 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122363 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122363 GSM4322312 SRA1045163 SRX7759423 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 11 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122364 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122364 GSM4322313 SRA1045163 SRX7759424 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 12 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122365 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122365 GSM4322314 SRA1045163 SRX7759425 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 13 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122366 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122366 GSM4322315 SRA1045163 SRX7759426 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 14 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122367 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122367 GSM4322316 SRA1045163 SRX7759427 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 15 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122368 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122368 GSM4322317 SRA1045163 SRX7759428 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 16 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122369 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122369 GSM4322318 SRA1045163 SRX7759429 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 17 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122370 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/010861/SRR11122370 GSM4322319 SRA1045163 SRX7759430 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 18 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122371 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122371 GSM4322320 SRA1045163 SRX7759431 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 19 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122372 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122372 GSM4322321 SRA1045163 SRX7759432 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 20 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122373 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122373 GSM4322322 SRA1045163 SRX7759433 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 21 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122374 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122374 GSM4322323 SRA1045163 SRX7759434 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 22 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122375 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122375 GSM4322324 SRA1045163 SRX7759435 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 23 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122376 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122376 GSM4322325 SRA1045163 SRX7759436 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 24 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122377 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122377 GSM4322326 SRA1045163 SRX7759437 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 25 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122378 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122378 GSM4322327 SRA1045163 SRX7759438 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 26 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122380 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122380 GSM4322328 SRA1045163 SRX7759439 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 27 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122381 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122381 GSM4322329 SRA1045163 SRX7759440 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 28 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122382 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122382 GSM4322330 SRA1045163 SRX7759441 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 29 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122383 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122383 GSM4322331 SRA1045163 SRX7759442 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 30 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122384 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122384 GSM4322332 SRA1045163 SRX7759443 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 31 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122385 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122385 GSM4322333 SRA1045163 SRX7759444 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 32 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122386 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122386 GSM4322334 SRA1045163 SRX7759445 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 33 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122387 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122387 GSM4322335 SRA1045163 SRX7759446 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 34 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122388 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122388 GSM4322336 SRA1045163 SRX7759447 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 35 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122389 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122389 GSM4322337 SRA1045163 SRX7759448 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 36 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122390 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122390 GSM4322338 SRA1045163 SRX7759449 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 37 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122391 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122391 GSM4322339 SRA1045163 SRX7759450 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 38 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122392 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122392 GSM4322340 SRA1045163 SRX7759451 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 39 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122393 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122393 GSM4322341 SRA1045163 SRX7759452 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 40 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122394 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122394 GSM4322342 SRA1045163 SRX7759453 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 41 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122395 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122395 GSM4322343 SRA1045163 SRX7759454 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 42 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122396 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122396 GSM4322344 SRA1045163 SRX7759455 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 43 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122397 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122397 GSM4322345 SRA1045163 SRX7759456 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 44 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122398 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122398 GSM4322346 SRA1045163 SRX7759457 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 45 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122399 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122399 GSM4322347 SRA1045163 SRX7759458 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 46 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122400 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122400 GSM4322348 SRA1045163 SRX7759459 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 47 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122401 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122401 GSM4322349 SRA1045163 SRX7759460 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 48 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122402 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122402 GSM4322350 SRA1045163 SRX7759461 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 49 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122411 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122411 GSM4322359 SRA1045163 SRX7759361 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 50 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122412 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122412 GSM4322360 SRA1045163 SRX7759362 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 51 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122413 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122413 GSM4322361 SRA1045163 SRX7759363 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 52 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122414 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122414 GSM4322362 SRA1045163 SRX7759364 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 53 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122415 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122415 GSM4322363 SRA1045163 SRX7759365 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 54 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122416 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122416 GSM4322364 SRA1045163 SRX7759366 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 55 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122417 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122417 GSM4322365 SRA1045163 SRX7759367 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 56 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122418 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122418 GSM4322366 SRA1045163 SRX7759368 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 57 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122419 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122419 GSM4322367 SRA1045163 SRX7759369 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 58 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122420 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122420 GSM4322368 SRA1045163 SRX7759370 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 59 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122421 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122421 GSM4322369 SRA1045163 SRX7759371 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 60 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122422 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122422 GSM4322370 SRA1045163 SRX7759372 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 61 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122423 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122423 GSM4322371 SRA1045163 SRX7759373 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 62 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122424 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122424 GSM4322372 SRA1045163 SRX7759374 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 63 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122425 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122425 GSM4322373 SRA1045163 SRX7759375 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 64 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122426 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122426 GSM4322374 SRA1045163 SRX7759376 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 65 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122427 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122427 GSM4322375 SRA1045163 SRX7759377 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 66 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122428 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122428 GSM4322376 SRA1045163 SRX7759378 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 67 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122429 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122429 GSM4322377 SRA1045163 SRX7759379 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 68 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122430 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122430 GSM4322378 SRA1045163 SRX7759380 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 69 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122431 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122431 GSM4322379 SRA1045163 SRX7759381 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 70 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122432 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122432 GSM4322380 SRA1045163 SRX7759382 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 71 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122433 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122433 GSM4322381 SRA1045163 SRX7759383 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 72 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122434 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122434 GSM4322382 SRA1045163 SRX7759384 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 73 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122435 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122435 GSM4322383 SRA1045163 SRX7759385 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 74 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122436 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122436 GSM4322384 SRA1045163 SRX7759386 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 75 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122437 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122437 GSM4322385 SRA1045163 SRX7759387 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 76 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122438 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122438 GSM4322386 SRA1045163 SRX7759388 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 77 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122439 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122439 GSM4322387 SRA1045163 SRX7759389 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 78 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122440 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122440 GSM4322388 SRA1045163 SRX7759390 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 79 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122441 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122441 GSM4322389 SRA1045163 SRX7759391 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 80 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122442 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122442 GSM4322390 SRA1045163 SRX7759392 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 81 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122443 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122443 GSM4322391 SRA1045163 SRX7759393 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 82 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122444 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/010861/SRR11122444 GSM4322392 SRA1045163 SRX7759394 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 83 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122445 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122445 GSM4322393 SRA1045163 SRX7759395 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 84 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122446 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/010861/SRR11122446 GSM4322394 SRA1045163 SRX7759396 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 85 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122447 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122447 GSM4322395 SRA1045163 SRX7759397 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 86 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122448 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122448 GSM4322396 SRA1045163 SRX7759398 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 87 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122449 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122449 GSM4322397 SRA1045163 SRX7759399 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 88 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122450 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122450 GSM4322398 SRA1045163 SRX7759400 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 89 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122451 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122451 GSM4322399 SRA1045163 SRX7759401 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 90 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122452 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122452 GSM4322400 SRA1045163 SRX7759402 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 91 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122453 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122453 GSM4322401 SRA1045163 SRX7759404 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 92 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122454 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122454 GSM4322402 SRA1045163 SRX7759405 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 93 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122455 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122455 GSM4322403 SRA1045163 SRX7759406 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 94 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122456 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122456 GSM4322404 SRA1045163 SRX7759407 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 95 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122457 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122457 GSM4322405 SRA1045163 SRX7759408 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 96 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122458 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122458 GSM4322406 SRA1045163 SRX7759409 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 97 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122459 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122459 GSM4322407 SRA1045163 SRX7759410 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 98 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122460 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/010861/SRR11122460 GSM4322408 SRA1045163 SRX7759411 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 99 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122461 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122461 GSM4322409 SRA1045163 SRX7759412 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 100 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122462 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122462 GSM4322410 SRA1045163 SRX7759413 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 101 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122334 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122334 GSM4322283 SRA1045163 SRX7759333 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 102 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122335 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122335 GSM4322284 SRA1045163 SRX7759334 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 103 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122336 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122336 GSM4322285 SRA1045163 SRX7759335 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 104 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122337 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122337 GSM4322286 SRA1045163 SRX7759336 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 105 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122338 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122338 GSM4322287 SRA1045163 SRX7759337 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 106 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122339 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122339 GSM4322288 SRA1045163 SRX7759338 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 107 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122340 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122340 GSM4322289 SRA1045163 SRX7759339 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 108 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122341 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122341 GSM4322290 SRA1045163 SRX7759340 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 109 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122342 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122342 GSM4322291 SRA1045163 SRX7759341 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 110 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122343 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122343 GSM4322292 SRA1045163 SRX7759342 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 111 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122344 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122344 GSM4322293 SRA1045163 SRX7759343 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 112 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122345 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122345 GSM4322294 SRA1045163 SRX7759344 ATAC-seq PAIRED SRP250335 PRJNA607864 145619 113 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122346 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122346 GSM4322295 SRA1045163 SRX7759345 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 114 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122347 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122347 GSM4322296 SRA1045163 SRX7759346 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 115 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122348 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122348 GSM4322297 SRA1045163 SRX7759347 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 116 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122349 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122349 GSM4322298 SRA1045163 SRX7759348 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 117 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122350 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010861/SRR11122350 GSM4322299 SRA1045163 SRX7759349 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 118 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122351 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122351 GSM4322300 SRA1045163 SRX7759350 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 119 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122352 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122352 GSM4322301 SRA1045163 SRX7759351 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 120 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122353 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122353 GSM4322302 SRA1045163 SRX7759352 RNA-Seq PAIRED SRP250335 PRJNA607864 145619 121 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122403 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122403 GSM4322351 SRA1045163 SRX7759353 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 122 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122404 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122404 GSM4322352 SRA1045163 SRX7759354 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 123 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122405 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122405 GSM4322353 SRA1045163 SRX7759355 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 124 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122406 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/010861/SRR11122406 GSM4322354 SRA1045163 SRX7759356 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 125 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122407 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122407 GSM4322355 SRA1045163 SRX7759357 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 126 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122408 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122408 GSM4322356 SRA1045163 SRX7759358 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 127 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122409 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010861/SRR11122409 GSM4322357 SRA1045163 SRX7759359 RNA-Seq SINGLE SRP250335 PRJNA607864 145619 128 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants 33555045 57790 SRP250335 SRR11122410 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/010861/SRR11122410 GSM4322358 SRA1045163 SRX7759360 RNA-Seq SINGLE SRP250335 PRJNA607864 146830 1 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292378 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/011027/SRR11292378 GSM4407619 SRA1054068 SRX7897943 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 2 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292379 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011027/SRR11292379 GSM4407620 SRA1054068 SRX7897944 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 3 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292380 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/011027/SRR11292380 GSM4407621 SRA1054068 SRX7897945 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 4 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292381 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/011027/SRR11292381 GSM4407622 SRA1054068 SRX7897946 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 5 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292382 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011027/SRR11292382 GSM4407623 SRA1054068 SRX7897947 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 6 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292383 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/011027/SRR11292383 GSM4407624 SRA1054068 SRX7897948 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 7 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292384 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/011027/SRR11292384 GSM4407625 SRA1054068 SRX7897949 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 8 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292385 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/011027/SRR11292385 GSM4407626 SRA1054068 SRX7897950 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 9 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292386 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/011027/SRR11292386 GSM4407627 SRA1054068 SRX7897951 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 10 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292387 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011027/SRR11292387 GSM4407628 SRA1054068 SRX7897952 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 11 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292388 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/011027/SRR11292388 GSM4407629 SRA1054068 SRX7897953 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 12 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292389 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/011027/SRR11292389 GSM4407630 SRA1054068 SRX7897954 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 13 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292390 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011027/SRR11292390 GSM4407631 SRA1054068 SRX7897955 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 14 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292391 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/011027/SRR11292391 GSM4407632 SRA1054068 SRX7897956 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 15 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292392 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/011027/SRR11292392 GSM4407633 SRA1054068 SRX7897957 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 16 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292393 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/011027/SRR11292393 GSM4407634 SRA1054068 SRX7897958 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 17 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292394 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/011027/SRR11292394 GSM4407635 SRA1054068 SRX7897959 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 18 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292395 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/011027/SRR11292395 GSM4407636 SRA1054068 SRX7897960 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 19 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292396 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/011027/SRR11292396 GSM4407637 SRA1054068 SRX7897961 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 20 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292397 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/011027/SRR11292397 GSM4407638 SRA1054068 SRX7897962 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 21 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292398 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/011027/SRR11292398 GSM4407639 SRA1054068 SRX7897963 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 22 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292399 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011027/SRR11292399 GSM4407640 SRA1054068 SRX7897964 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 23 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292400 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011027/SRR11292400 GSM4407641 SRA1054068 SRX7897965 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 24 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292401 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/011027/SRR11292401 GSM4407642 SRA1054068 SRX7897966 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 25 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292402 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011027/SRR11292402 GSM4407643 SRA1054068 SRX7897967 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 26 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292403 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011027/SRR11292403 GSM4407644 SRA1054068 SRX7897968 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 27 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292404 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011027/SRR11292404 GSM4407645 SRA1054068 SRX7897969 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 28 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292405 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/011027/SRR11292405 GSM4407646 SRA1054068 SRX7897970 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 29 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292406 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/011027/SRR11292406 GSM4407647 SRA1054068 SRX7897971 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 30 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292407 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/011027/SRR11292407 GSM4407648 SRA1054068 SRX7897972 ATAC-seq PAIRED SRP252458 PRJNA612063 146830 31 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 SRR11292408 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/011027/SRR11292408 GSM4407649 SRA1054068 SRX7897973 ATAC-seq PAIRED SRP252458 PRJNA612063 146836 1 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, A Kakebeen, A Wills Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenopus tropicalis tadpoles and 24 hours post amputation regenerated tail tissue. 0 56933 SRP252466 SRR11292562 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/011027/SRR11292562 GSM4407688 SRA1054090 SRX7898127 RNA-Seq PAIRED SRP252466 PRJNA612070 146836 2 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, A Kakebeen, A Wills Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenopus tropicalis tadpoles and 24 hours post amputation regenerated tail tissue. 0 56933 SRP252466 SRR11292563 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011027/SRR11292563 GSM4407689 SRA1054090 SRX7898128 RNA-Seq PAIRED SRP252466 PRJNA612070 147621 1 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432510 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011164/SRR11432510 GSM4435518 SRA1059860 SRX8010722 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 2 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432511 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432511 GSM4435519 SRA1059860 SRX8010723 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 3 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432512 https://sra-download.ncbi.nlm.nih.gov/traces/sra79/SRR/011164/SRR11432512 GSM4435520 SRA1059860 SRX8010724 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 4 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432513 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432513 GSM4435521 SRA1059860 SRX8010725 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 5 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432514 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011164/SRR11432514 GSM4435522 SRA1059860 SRX8010726 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 6 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432515 https://sra-download.ncbi.nlm.nih.gov/traces/sra79/SRR/011164/SRR11432515 GSM4435523 SRA1059860 SRX8010727 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 7 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432516 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432516 GSM4435524 SRA1059860 SRX8010728 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 8 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432517 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432517 GSM4435525 SRA1059860 SRX8010729 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 9 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432518 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432518 GSM4435526 SRA1059860 SRX8010730 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 10 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432519 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011164/SRR11432519 GSM4435527 SRA1059860 SRX8010731 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 11 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432520 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/011164/SRR11432520 GSM4435528 SRA1059860 SRX8010732 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 12 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432521 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432521 GSM4435529 SRA1059860 SRX8010733 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 13 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432522 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432522 GSM4435530 SRA1059860 SRX8010734 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 14 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432523 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432523 GSM4435531 SRA1059860 SRX8010735 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 15 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432524 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432524 GSM4435532 SRA1059860 SRX8010736 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 16 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432525 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432525 GSM4435533 SRA1059860 SRX8010737 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 17 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432526 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432526 GSM4435534 SRA1059860 SRX8010738 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 18 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432527 https://sra-download.ncbi.nlm.nih.gov/traces/sra79/SRR/011164/SRR11432527 GSM4435535 SRA1059860 SRX8010739 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 19 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432528 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432528 GSM4435536 SRA1059860 SRX8010740 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 20 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432529 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/011164/SRR11432529 GSM4435537 SRA1059860 SRX8010741 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 21 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432530 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432530 GSM4435538 SRA1059860 SRX8010742 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 22 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432531 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432531 GSM4435539 SRA1059860 SRX8010743 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 23 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432532 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011164/SRR11432532 GSM4435540 SRA1059860 SRX8010744 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 24 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432533 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432533 GSM4435541 SRA1059860 SRX8010745 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 25 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432534 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432534 GSM4435542 SRA1059860 SRX8010746 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 26 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432535 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/011164/SRR11432535 GSM4435543 SRA1059860 SRX8010747 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 27 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432536 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432536 GSM4435544 SRA1059860 SRX8010748 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 28 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432537 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432537 GSM4435545 SRA1059860 SRX8010749 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 29 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432538 https://sra-download.ncbi.nlm.nih.gov/traces/sra30/SRR/011164/SRR11432538 GSM4435546 SRA1059860 SRX8010750 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 30 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432539 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011164/SRR11432539 GSM4435547 SRA1059860 SRX8010751 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 31 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432540 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/011164/SRR11432540 GSM4435548 SRA1059860 SRX8010752 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 32 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432541 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432541 GSM4435549 SRA1059860 SRX8010753 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 33 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432542 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432542 GSM4435550 SRA1059860 SRX8010754 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 34 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432543 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432543 GSM4435551 SRA1059860 SRX8010755 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 35 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432544 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432544 GSM4435552 SRA1059860 SRX8010756 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 36 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432545 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432545 GSM4435553 SRA1059860 SRX8010757 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 37 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432546 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432546 GSM4435554 SRA1059860 SRX8010758 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 38 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432547 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011164/SRR11432547 GSM4435555 SRA1059860 SRX8010759 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 39 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432548 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432548 GSM4435556 SRA1059860 SRX8010760 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 40 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432549 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011164/SRR11432549 GSM4435557 SRA1059860 SRX8010761 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 41 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432550 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011164/SRR11432550 GSM4435558 SRA1059860 SRX8010762 RNA-Seq PAIRED SRP254296 PRJNA615819 147621 42 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 SRR11432551 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011164/SRR11432551 GSM4435559 SRA1059860 SRX8010763 RNA-Seq PAIRED SRP254296 PRJNA615819 148726 1 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549523 https://sra-download.ncbi.nlm.nih.gov/traces/sra80/SRR/011278/SRR11549523 GSM4477737 SRA1065608 SRX8119313 ChIP-Seq SINGLE SRP256469 PRJNA625510 148726 2 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549524 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011278/SRR11549524 GSM4477738 SRA1065608 SRX8119314 ChIP-Seq SINGLE SRP256469 PRJNA625510 148726 3 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549525 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/011278/SRR11549525 GSM4477739 SRA1065608 SRX8119315 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 4 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549526 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/011278/SRR11549526 GSM4477740 SRA1065608 SRX8119316 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 5 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549527 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/011278/SRR11549527 GSM4477741 SRA1065608 SRX8119317 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 6 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549528 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/011278/SRR11549528 GSM4477742 SRA1065608 SRX8119318 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 7 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549529 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/011278/SRR11549529 GSM4477743 SRA1065608 SRX8119319 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 8 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549530 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/011278/SRR11549530 GSM4477744 SRA1065608 SRX8119320 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 9 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549531 https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/011278/SRR11549531 GSM4477745 SRA1065608 SRX8119321 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 10 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549532 https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/011278/SRR11549532 GSM4477746 SRA1065608 SRX8119322 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 11 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549533 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/011278/SRR11549533 GSM4477747 SRA1065608 SRX8119323 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 12 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549534 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/011278/SRR11549534 GSM4477748 SRA1065608 SRX8119324 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 13 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549535 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/011278/SRR11549535 GSM4477749 SRA1065608 SRX8119325 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 14 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549536 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/011278/SRR11549536 GSM4477750 SRA1065608 SRX8119326 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 15 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549537 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/011278/SRR11549537 GSM4477751 SRA1065608 SRX8119327 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 16 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549538 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011278/SRR11549538 GSM4477752 SRA1065608 SRX8119328 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 17 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549539 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/011278/SRR11549539 GSM4477753 SRA1065608 SRX8119329 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 18 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549540 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/011278/SRR11549540 GSM4477754 SRA1065608 SRX8119330 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 19 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549541 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/011278/SRR11549541 GSM4477755 SRA1065608 SRX8119331 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 20 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549542 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/011278/SRR11549542 GSM4477756 SRA1065608 SRX8119332 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 21 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549543 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/011278/SRR11549543 GSM4477757 SRA1065608 SRX8119333 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 22 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549544 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/011278/SRR11549544 GSM4477758 SRA1065608 SRX8119334 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 23 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549545 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/011278/SRR11549545 GSM4477759 SRA1065608 SRX8119335 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 24 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549546 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011278/SRR11549546 GSM4477760 SRA1065608 SRX8119336 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 25 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549547 https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/011278/SRR11549547 GSM4477761 SRA1065608 SRX8119337 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 26 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549548 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/011278/SRR11549548 GSM4477762 SRA1065608 SRX8119338 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 27 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549549 https://sra-download.ncbi.nlm.nih.gov/traces/sra61/SRR/011278/SRR11549549 GSM4477763 SRA1065608 SRX8119339 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 28 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549550 https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/011278/SRR11549550 GSM4477764 SRA1065608 SRX8119340 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 29 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549551 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/011278/SRR11549551 GSM4477765 SRA1065608 SRX8119341 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 30 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549552 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/011278/SRR11549552 GSM4477766 SRA1065608 SRX8119342 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 31 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549553 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/011278/SRR11549553 GSM4477767 SRA1065608 SRX8119343 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 32 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549554 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011278/SRR11549554 GSM4477768 SRA1065608 SRX8119344 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 33 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549555 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/011278/SRR11549555 GSM4477769 SRA1065608 SRX8119345 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 34 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549556 https://sra-download.ncbi.nlm.nih.gov/traces/sra16/SRR/011278/SRR11549556 GSM4477770 SRA1065608 SRX8119346 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 35 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549557 https://sra-download.ncbi.nlm.nih.gov/traces/sra80/SRR/011278/SRR11549557 GSM4477771 SRA1065608 SRX8119347 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 36 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549558 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/011278/SRR11549558 GSM4477772 SRA1065608 SRX8119348 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 37 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549559 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/011278/SRR11549559 GSM4477773 SRA1065608 SRX8119349 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 38 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549560 https://sra-download.ncbi.nlm.nih.gov/traces/sra80/SRR/011278/SRR11549560 GSM4477774 SRA1065608 SRX8119350 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 39 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549561 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/011278/SRR11549561 GSM4477775 SRA1065608 SRX8119351 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 40 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549562 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/011278/SRR11549562 GSM4477776 SRA1065608 SRX8119352 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 41 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549563 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/011278/SRR11549563 GSM4477777 SRA1065608 SRX8119353 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 42 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549564 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/011278/SRR11549564 GSM4477778 SRA1065608 SRX8119354 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 43 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549565 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/011278/SRR11549565 GSM4477779 SRA1065608 SRX8119355 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 44 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549566 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011278/SRR11549566 GSM4477780 SRA1065608 SRX8119356 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 45 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549567 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/011278/SRR11549567 GSM4477781 SRA1065608 SRX8119357 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 46 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549568 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/011278/SRR11549568 GSM4477782 SRA1065608 SRX8119358 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 47 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549569 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/011278/SRR11549569 GSM4477783 SRA1065608 SRX8119359 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 48 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549570 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/011278/SRR11549570 GSM4477784 SRA1065608 SRX8119360 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 49 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549571 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/011278/SRR11549571 GSM4477785 SRA1065608 SRX8119361 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 50 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549572 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/011278/SRR11549572 GSM4477786 SRA1065608 SRX8119362 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 51 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549573 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/011278/SRR11549573 GSM4477787 SRA1065608 SRX8119363 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 52 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549574 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/011278/SRR11549574 GSM4477788 SRA1065608 SRX8119364 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 53 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549575 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/011278/SRR11549575 GSM4477789 SRA1065608 SRX8119365 RNA-Seq SINGLE SRP256469 PRJNA625510 148726 54 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos 32894225 57340 SRP256469 SRR11549576 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/011278/SRR11549576 GSM4477790 SRA1065608 SRX8119366 RNA-Seq SINGLE SRP256469 PRJNA625510 149538 1 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing. 32467234 57038 SRP258988 SRR11635832 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/011363/SRR11635832 GSM4504552 SRA1070177 SRX8199916 RNA-Seq PAIRED SRP258988 PRJNA628999 149538 2 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing. 32467234 57038 SRP258988 SRR11635833 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/011363/SRR11635833 GSM4504553 SRA1070177 SRX8199917 RNA-Seq PAIRED SRP258988 PRJNA628999 149538 3 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing. 32467234 57038 SRP258988 SRR11635834 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/011363/SRR11635834 GSM4504554 SRA1070177 SRX8199918 RNA-Seq PAIRED SRP258988 PRJNA628999 149538 4 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing. 32467234 57038 SRP258988 SRR11635835 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/011363/SRR11635835 GSM4504555 SRA1070177 SRX8199919 RNA-Seq PAIRED SRP258988 PRJNA628999 149538 5 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing. 32467234 57038 SRP258988 SRR11635836 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/011363/SRR11635836 GSM4504556 SRA1070177 SRX8199914 RNA-Seq PAIRED SRP258988 PRJNA628999 149538 6 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing. 32467234 57038 SRP258988 SRR11635837 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/011363/SRR11635837 GSM4504557 SRA1070177 SRX8199915 RNA-Seq PAIRED SRP258988 PRJNA628999 150911 1 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816742 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/011539/SRR11816742 GSM4560793 SRA1077321 SRX8367761 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 2 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816743 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/011539/SRR11816743 GSM4560794 SRA1077321 SRX8367762 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 3 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816744 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/011539/SRR11816744 GSM4560795 SRA1077321 SRX8367763 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 4 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816745 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/011539/SRR11816745 GSM4560796 SRA1077321 SRX8367743 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 5 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816746 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/011539/SRR11816746 GSM4560797 SRA1077321 SRX8367744 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 6 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816747 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/011539/SRR11816747 GSM4560798 SRA1077321 SRX8367745 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 7 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816748 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/011539/SRR11816748 GSM4560799 SRA1077321 SRX8367746 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 8 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816749 https://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRR/011539/SRR11816749 GSM4560800 SRA1077321 SRX8367747 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 9 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816750 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/011539/SRR11816750 GSM4560801 SRA1077321 SRX8367748 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 10 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816751 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011539/SRR11816751 GSM4560802 SRA1077321 SRX8367749 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 11 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816752 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/011539/SRR11816752 GSM4560803 SRA1077321 SRX8367750 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 12 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816753 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011539/SRR11816753 GSM4560804 SRA1077321 SRX8367751 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 13 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816754 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/011539/SRR11816754 GSM4560805 SRA1077321 SRX8367752 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 14 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816755 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/011539/SRR11816755 GSM4560806 SRA1077321 SRX8367753 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 15 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816756 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/011539/SRR11816756 GSM4560807 SRA1077321 SRX8367754 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 16 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816757 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011539/SRR11816757 GSM4560808 SRA1077321 SRX8367755 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 17 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816758 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/011539/SRR11816758 GSM4560809 SRA1077321 SRX8367756 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 18 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816738 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/011539/SRR11816738 GSM4560810 SRA1077321 SRX8367757 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 19 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816739 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/011539/SRR11816739 GSM4560811 SRA1077321 SRX8367758 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 20 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816740 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/011539/SRR11816740 GSM4560812 SRA1077321 SRX8367759 RNA-Seq SINGLE SRP262433 PRJNA634073 150911 21 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 SRR11816741 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/011539/SRR11816741 GSM4560813 SRA1077321 SRX8367760 RNA-Seq SINGLE SRP262433 PRJNA634073 152902 1 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060513 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/011777/SRR12060513 GSM4629156 SRA1089346 SRX8588692 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 2 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060514 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/011777/SRR12060514 GSM4629157 SRA1089346 SRX8588693 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 3 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060515 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/011777/SRR12060515 GSM4629158 SRA1089346 SRX8588694 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 4 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060516 https://sra-download.ncbi.nlm.nih.gov/traces/sra56/SRR/011777/SRR12060516 GSM4629159 SRA1089346 SRX8588695 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 5 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060517 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/011777/SRR12060517 GSM4629160 SRA1089346 SRX8588696 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 6 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060518 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/011777/SRR12060518 GSM4629161 SRA1089346 SRX8588697 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 7 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060519 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/011777/SRR12060519 GSM4629162 SRA1089346 SRX8588698 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 8 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060520 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/011777/SRR12060520 GSM4629163 SRA1089346 SRX8588699 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 9 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060521 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/011777/SRR12060521 GSM4629164 SRA1089346 SRX8588700 RNA-Seq PAIRED SRP268142 PRJNA640808 152902 10 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 SRR12060522 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/011777/SRR12060522 GSM4629165 SRA1089346 SRX8588701 RNA-Seq PAIRED SRP268142 PRJNA640808 153058 1 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075263 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/011792/SRR12075263 GSM4633643 SRA1090230 SRX8602695 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 2 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075264 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/011792/SRR12075264 GSM4633644 SRA1090230 SRX8602696 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 3 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075265 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/011792/SRR12075265 GSM4633645 SRA1090230 SRX8602697 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 4 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075266 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/011792/SRR12075266 GSM4633646 SRA1090230 SRX8602698 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 5 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075267 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/011792/SRR12075267 GSM4633647 SRA1090230 SRX8602699 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 6 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075268 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/011792/SRR12075268 GSM4633648 SRA1090230 SRX8602700 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 7 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075269 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/011792/SRR12075269 GSM4633649 SRA1090230 SRX8602701 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 8 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075270 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/011792/SRR12075270 GSM4633650 SRA1090230 SRX8602702 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 9 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075271 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/011792/SRR12075271 GSM4633651 SRA1090230 SRX8602703 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 10 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075272 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/011792/SRR12075272 GSM4633652 SRA1090230 SRX8602704 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 11 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075273 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/011792/SRR12075273 GSM4633653 SRA1090230 SRX8602705 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 12 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075274 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/011792/SRR12075274 GSM4633654 SRA1090230 SRX8602706 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 13 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075275 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/011792/SRR12075275 GSM4633655 SRA1090230 SRX8602707 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 14 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075276 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/011792/SRR12075276 GSM4633656 SRA1090230 SRX8602708 ChIP-Seq SINGLE SRP268455 PRJNA641345 153058 15 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq 33875480 58022 SRP268455 SRR12075277 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/011792/SRR12075277 GSM4633657 SRA1090230 SRX8602709 ChIP-Seq SINGLE SRP268455 PRJNA641345 153925 1 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162974 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162974/SRR12162974.1 GSM4658472 SRA1095739 SRX8678465 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 2 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162975 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162975/SRR12162975.1 GSM4658473 SRA1095739 SRX8678466 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 3 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162976 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162976/SRR12162976.1 GSM4658474 SRA1095739 SRX8678467 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 4 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162977 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162977/SRR12162977.1 GSM4658475 SRA1095739 SRX8678468 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 5 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162978 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162978/SRR12162978.1 GSM4658476 SRA1095739 SRX8678469 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 6 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162979 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162979/SRR12162979.1 GSM4658477 SRA1095739 SRX8678470 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 7 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162980 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162980/SRR12162980.1 GSM4658478 SRA1095739 SRX8678471 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 8 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162981 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162981/SRR12162981.1 GSM4658479 SRA1095739 SRX8678472 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 9 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162982 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162982/SRR12162982.1 GSM4658480 SRA1095739 SRX8678473 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 10 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162983 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162983/SRR12162983.1 GSM4658481 SRA1095739 SRX8678474 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 11 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162984 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162984/SRR12162984.1 GSM4658482 SRA1095739 SRX8678475 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 12 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162985 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162985/SRR12162985.1 GSM4658483 SRA1095739 SRX8678476 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 13 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162986 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162986/SRR12162986.1 GSM4658484 SRA1095739 SRX8678477 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 14 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162987 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162987/SRR12162987.1 GSM4658485 SRA1095739 SRX8678478 RNA-Seq PAIRED SRP270638 PRJNA644555 153925 15 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina). 34267234 58287 SRP270638 SRR12162988 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR12162988/SRR12162988.1 GSM4658486 SRA1095739 SRX8678479 RNA-Seq PAIRED SRP270638 PRJNA644555 154399 1 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224382 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224382/SRR10224382.1 A_0.5%_ETOH_t_0hr SRA972085 SRX6943936 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 2 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224338 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224338/SRR10224338.1 A_0.5%_ETOH_t_1.5hr SRA972085 SRX6943980 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 3 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224402 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224402/SRR10224402.1 A_0.5%_ETOH_t_3hr SRA972085 SRX6943916 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 4 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224398 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224398/SRR10224398.1 A_0.5%_ETOH_t_4.5hr SRA972085 SRX6943920 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 5 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224404 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224404/SRR10224404.1 A_10nM_RA_t_0hr SRA972085 SRX6943914 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 6 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224360 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224360/SRR10224360.1 A_10nM_RA_t_1.5hr SRA972085 SRX6943958 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 7 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224316 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224316/SRR10224316.1 A_10nM_RA_t_3hr SRA972085 SRX6944002 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 8 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224400 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224400/SRR10224400.1 A_10nM_RA_t_4.5hr SRA972085 SRX6943918 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 9 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224393 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224393/SRR10224393.1 A_50uM_DEAB_t_0hr SRA972085 SRX6943925 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 10 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224349 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224349/SRR10224349.1 A_50uM_DEAB_t_1.5hr SRA972085 SRX6943969 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 11 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224403 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224403/SRR10224403.1 A_50uM_DEAB_t_3hr SRA972085 SRX6943915 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 12 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224399 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224399/SRR10224399.1 A_50uM_DEAB_t_4.5hr SRA972085 SRX6943919 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 13 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224405 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224405/SRR10224405.1 A_control_t_0hr SRA972085 SRX6943913 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 14 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224371 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224371/SRR10224371.1 A_control_t_1.5hr SRA972085 SRX6943947 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 15 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224327 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224327/SRR10224327.1 A_control_t_3hr SRA972085 SRX6943991 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 16 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224401 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224401/SRR10224401.1 A_control_t_4.5hr SRA972085 SRX6943917 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 17 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224394 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224394/SRR10224394.1 B_0.5%_ETOH_t_0hr SRA972085 SRX6943924 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 18 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224389 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224389/SRR10224389.1 B_0.5%_ETOH_t_1.5hr SRA972085 SRX6943929 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 19 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224385 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224385/SRR10224385.1 B_0.5%_ETOH_t_3hr SRA972085 SRX6943933 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 20 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224380 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224380/SRR10224380.1 B_0.5%_ETOH_t_4.5hr SRA972085 SRX6943938 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 21 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224396 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224396/SRR10224396.1 B_10nM_RA_t_0hr SRA972085 SRX6943922 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 22 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224391 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224391/SRR10224391.1 B_10nM_RA_t_1.5hr SRA972085 SRX6943927 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 23 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224387 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224387/SRR10224387.1 B_10nM_RA_t_3hr SRA972085 SRX6943931 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 24 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224383 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224383/SRR10224383.1 B_10nM_RA_t_4.5hr SRA972085 SRX6943935 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 25 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224395 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224395/SRR10224395.1 B_50uM_DEAB_t_0hr SRA972085 SRX6943923 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 26 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224390 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224390/SRR10224390.1 B_50uM_DEAB_t_1.5hr SRA972085 SRX6943928 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 27 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224386 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224386/SRR10224386.1 B_50uM_DEAB_t_3hr SRA972085 SRX6943932 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 28 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224381 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224381/SRR10224381.1 B_50uM_DEAB_t_4.5hr SRA972085 SRX6943937 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 29 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224397 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224397/SRR10224397.1 B_control_t_0hr SRA972085 SRX6943921 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 30 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224392 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224392/SRR10224392.1 B_control_t_1.5hr SRA972085 SRX6943926 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 31 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224388 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224388/SRR10224388.1 B_control_t_3hr SRA972085 SRX6943930 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 32 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224384 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224384/SRR10224384.1 B_control_t_4.5hr SRA972085 SRX6943934 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 33 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224376 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224376/SRR10224376.1 C_0.5%_ETOH_t_0hr SRA972085 SRX6943942 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 34 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224372 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224372/SRR10224372.1 C_0.5%_ETOH_t_1.5hr SRA972085 SRX6943946 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 35 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224367 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224367/SRR10224367.1 C_0.5%_ETOH_t_3hr SRA972085 SRX6943951 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 36 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224363 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224363/SRR10224363.1 C_0.5%_ETOH_t_4.5hr SRA972085 SRX6943955 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 37 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224378 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224378/SRR10224378.1 C_10nM_RA_t_0hr SRA972085 SRX6943940 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 38 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224374 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224374/SRR10224374.1 C_10nM_RA_t_1.5hr SRA972085 SRX6943944 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 39 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224369 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224369/SRR10224369.1 C_10nM_RA_t_3hr SRA972085 SRX6943949 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 40 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224365 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224365/SRR10224365.1 C_10nM_RA_t_4.5hr SRA972085 SRX6943953 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 41 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224377 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224377/SRR10224377.1 C_50uM_DEAB_t_0hr SRA972085 SRX6943941 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 42 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224373 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224373/SRR10224373.1 C_50uM_DEAB_t_1.5hr SRA972085 SRX6943945 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 43 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224368 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224368/SRR10224368.1 C_50uM_DEAB_t_3hr SRA972085 SRX6943950 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 44 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224364 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224364/SRR10224364.1 C_50uM_DEAB_t_4.5hr SRA972085 SRX6943954 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 45 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224379 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224379/SRR10224379.1 C_control_t_0hr SRA972085 SRX6943939 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 46 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224375 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224375/SRR10224375.1 C_control_t_1.5hr SRA972085 SRX6943943 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 47 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224370 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224370/SRR10224370.1 C_control_t_3hr SRA972085 SRX6943948 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 48 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224366 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224366/SRR10224366.1 C_control_t_4.5hr SRA972085 SRX6943952 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 49 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224358 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224358/SRR10224358.1 D_0.5%_ETOH_t_0hr SRA972085 SRX6943960 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 50 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224354 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224354/SRR10224354.1 D_0.5%_ETOH_t_1.5hr SRA972085 SRX6943964 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 51 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224350 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224350/SRR10224350.1 D_0.5%_ETOH_t_3hr SRA972085 SRX6943968 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 52 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224345 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224345/SRR10224345.1 D_0.5%_ETOH_t_4.5hr SRA972085 SRX6943973 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 53 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224361 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224361/SRR10224361.1 D_10nM_RA_t_0hr SRA972085 SRX6943957 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 54 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224356 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224356/SRR10224356.1 D_10nM_RA_t_1.5hr SRA972085 SRX6943962 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 55 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224352 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224352/SRR10224352.1 D_10nM_RA_t_3hr SRA972085 SRX6943966 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 56 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224347 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224347/SRR10224347.1 D_10nM_RA_t_4.5hr SRA972085 SRX6943971 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 57 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224359 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224359/SRR10224359.1 D_50uM_DEAB_t_0hr SRA972085 SRX6943959 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 58 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224355 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224355/SRR10224355.1 D_50uM_DEAB_t_1.5hr SRA972085 SRX6943963 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 59 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224351 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224351/SRR10224351.1 D_50uM_DEAB_t_3hr SRA972085 SRX6943967 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 60 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224346 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224346/SRR10224346.1 D_50uM_DEAB_t_4.5hr SRA972085 SRX6943972 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 61 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224362 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224362/SRR10224362.1 D_control_t_0hr SRA972085 SRX6943956 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 62 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224357 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224357/SRR10224357.1 D_control_t_1.5hr SRA972085 SRX6943961 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 63 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224353 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224353/SRR10224353.1 D_control_t_3hr SRA972085 SRX6943965 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 64 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224348 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224348/SRR10224348.1 D_control_t_4.5hr SRA972085 SRX6943970 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 65 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224341 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224341/SRR10224341.1 E_0.5%_ETOH_t_0hr SRA972085 SRX6943977 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 66 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224336 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224336/SRR10224336.1 E_0.5%_ETOH_t_1.5hr SRA972085 SRX6943982 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 67 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224332 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224332/SRR10224332.1 E_0.5%_ETOH_t_3hr SRA972085 SRX6943986 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 68 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224328 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224328/SRR10224328.1 E_0.5%_ETOH_t_4.5hr SRA972085 SRX6943990 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 69 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224343 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224343/SRR10224343.1 E_10nM_RA_t_0hr SRA972085 SRX6943975 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 70 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224339 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224339/SRR10224339.1 E_10nM_RA_t_1.5hr SRA972085 SRX6943979 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 71 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224334 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224334/SRR10224334.1 E_10nM_RA_t_3hr SRA972085 SRX6943984 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 72 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224330 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224330/SRR10224330.1 E_10nM_RA_t_4.5hr SRA972085 SRX6943988 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 73 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224342 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224342/SRR10224342.1 E_50uM_DEAB_t_0hr SRA972085 SRX6943976 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 74 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224337 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224337/SRR10224337.1 E_50uM_DEAB_t_1.5hr SRA972085 SRX6943981 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 75 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224333 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224333/SRR10224333.1 E_50uM_DEAB_t_3hr SRA972085 SRX6943985 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 76 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224329 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224329/SRR10224329.1 E_50uM_DEAB_t_4.5hr SRA972085 SRX6943989 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 77 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224344 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224344/SRR10224344.1 E_control_t_0hr SRA972085 SRX6943974 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 78 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224340 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224340/SRR10224340.1 E_control_t_1.5hr SRA972085 SRX6943978 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 79 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224335 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224335/SRR10224335.1 E_control_t_3hr SRA972085 SRX6943983 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 80 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224331 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224331/SRR10224331.1 E_control_t_4.5hr SRA972085 SRX6943987 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 81 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224323 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224323/SRR10224323.1 F_0.5%_ETOH_t_0hr SRA972085 SRX6943995 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 82 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224319 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224319/SRR10224319.1 F_0.5%_ETOH_t_1.5hr SRA972085 SRX6943999 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 83 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224314 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224314/SRR10224314.1 F_0.5%_ETOH_t_3hr SRA972085 SRX6944004 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 84 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224310 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224310/SRR10224310.1 F_0.5%_ETOH_t_4.5hr SRA972085 SRX6944008 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 85 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224325 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224325/SRR10224325.1 F_10nM_RA_t_0hr SRA972085 SRX6943993 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 86 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224321 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224321/SRR10224321.1 F_10nM_RA_t_1.5hr SRA972085 SRX6943997 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 87 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224317 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224317/SRR10224317.1 F_10nM_RA_t_3hr SRA972085 SRX6944001 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 88 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224312 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224312/SRR10224312.1 F_10nM_RA_t_4.5hr SRA972085 SRX6944006 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 89 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224324 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224324/SRR10224324.1 F_50uM_DEAB_t_0hr SRA972085 SRX6943994 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 90 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224320 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224320/SRR10224320.1 F_50uM_DEAB_t_1.5hr SRA972085 SRX6943998 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 91 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224315 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224315/SRR10224315.1 F_50uM_DEAB_t_3hr SRA972085 SRX6944003 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 92 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224311 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224311/SRR10224311.1 F_50uM_DEAB_t_4.5hr SRA972085 SRX6944007 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 93 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224326 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224326/SRR10224326.1 F_control_t_0hr SRA972085 SRX6943992 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 94 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224322 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR10224322/SRR10224322.1 F_control_t_1.5hr SRA972085 SRX6943996 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 95 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224318 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR10224318/SRR10224318.1 F_control_t_3hr SRA972085 SRX6944000 RNA-Seq PAIRED SRP224065 PRJNA575640 154399 96 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash. 34746144 58611 SRP224065 SRR10224313 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10224313/SRR10224313.1 F_control_t_4.5hr SRA972085 SRX6944005 RNA-Seq PAIRED SRP224065 PRJNA575640 154766 1 Chao Yang Detection of RNAs binding to Vg1 RNP We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA in oocyte Chao Yang, Paul Huber Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added to the oocyte extract to specificly pull down the biotin-Vg1 RNP. After extensive washes, biotin-Vg1 RNP were eluted off by incubating the beads with free biotin and the associted RNAs were extracted by phenol and precipitated by ethanol.For RNA sequencing strategy, a single RNA library was prepared and sequenced on an Illumina MiSeq nano 300 cycle reagent kit. 0 57689 SRP272643 SRR12271074 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/011983/SRR12271074 GSM4679353 SRA1100974 SRX8776133 RNA-Seq PAIRED SRP272643 PRJNA647395 154896 1 Sushant Bangru Single-cell transcriptomic analysis reveals unique cell types and patterns of gene expression in the frog corneal epithelium. Here, we use scRNA-seq to expand our understanding of the vertebrate corneal epithelium in an amphibian model, having undertaken a comprehensive chara Sushant Bangru, Surabhi Sonam, John Henry Adult Xenopus laevis were obtained from Nasco (Fort Atkinson, WI). Fertilized eggs were collected, and larvae were raised to Stage 49-51 based on developmental staging by Nieuwkoop and Faber (1956). The corneal epithelial tissue was dissected using very fine microscissors (Henry et al., 2019), taking care not to include any surrounding skin. Corneal tissue was dissociated and processed through the 10X pipeline, and we identified 5173 cells using Cellranger. 36049533 59307 SRP273066 SRR12287402 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/011999/SRR12287402 GSM4681962 SRA1102343 SRX8790735 RNA-Seq PAIRED SRP273066 PRJNA647844 155553 1 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368249 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/012078/SRR12368249 GSM4706047 SRA1106960 SRX8867433 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 2 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368250 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/012078/SRR12368250 GSM4706048 SRA1106960 SRX8867434 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 3 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368251 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/012078/SRR12368251 GSM4706049 SRA1106960 SRX8867435 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 4 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368252 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/012078/SRR12368252 GSM4706050 SRA1106960 SRX8867436 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 5 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368253 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/012078/SRR12368253 GSM4706051 SRA1106960 SRX8867437 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 6 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368254 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/012078/SRR12368254 GSM4706052 SRA1106960 SRX8867438 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 7 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368255 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/012078/SRR12368255 GSM4706053 SRA1106960 SRX8867439 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 8 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368256 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/012078/SRR12368256 GSM4706054 SRA1106960 SRX8867440 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 9 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368257 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/012078/SRR12368257 GSM4706055 SRA1106960 SRX8867441 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 10 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368258 https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/012078/SRR12368258 GSM4706056 SRA1106960 SRX8867442 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 11 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368259 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/012078/SRR12368259 GSM4706057 SRA1106960 SRX8867443 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 12 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368260 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/012078/SRR12368260 GSM4706058 SRA1106960 SRX8867444 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 13 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368261 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/012078/SRR12368261 GSM4706059 SRA1106960 SRX8867445 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 14 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368262 https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/012078/SRR12368262 GSM4706060 SRA1106960 SRX8867446 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 15 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368263 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/012078/SRR12368263 GSM4706061 SRA1106960 SRX8867447 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 16 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368264 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/012078/SRR12368264 GSM4706062 SRA1106960 SRX8867448 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 17 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368265 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/012078/SRR12368265 GSM4706063 SRA1106960 SRX8867449 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 18 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368266 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/012078/SRR12368266 GSM4706064 SRA1106960 SRX8867450 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 19 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368267 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/012078/SRR12368267 GSM4706065 SRA1106960 SRX8867451 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 20 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368268 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/012078/SRR12368268 GSM4706066 SRA1106960 SRX8867452 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 21 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368269 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/012078/SRR12368269 GSM4706067 SRA1106960 SRX8867453 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 22 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368270 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/012078/SRR12368270 GSM4706068 SRA1106960 SRX8867454 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 23 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368271 https://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRR/012078/SRR12368271 GSM4706069 SRA1106960 SRX8867455 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 24 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368272 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/012078/SRR12368272 GSM4706070 SRA1106960 SRX8867456 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 25 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368273 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/012078/SRR12368273 GSM4706071 SRA1106960 SRX8867457 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 26 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368274 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/012078/SRR12368274 GSM4706072 SRA1106960 SRX8867458 RNA-Seq PAIRED SRP275563 PRJNA650290 155553 27 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 SRR12368275 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/012078/SRR12368275 GSM4706073 SRA1106960 SRX8867459 RNA-Seq PAIRED SRP275563 PRJNA650290 157915 1 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12638133 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/012341/SRR12638133 GSM4780720 SRA1125264 SRX9120190 RNA-Seq PAIRED SRP282347 PRJNA663331 157915 2 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12638134 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/012341/SRR12638134 GSM4780721 SRA1125264 SRX9120191 RNA-Seq PAIRED SRP282347 PRJNA663331 157915 3 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12992319 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/012687/SRR12992319 GSM4780722 SRA1125264 SRX9120192 RNA-Seq PAIRED SRP282347 PRJNA663331 157915 4 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12992320 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/012687/SRR12992320 GSM4780723 SRA1125264 SRX9120193 RNA-Seq PAIRED SRP282347 PRJNA663331 157915 5 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12638137 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/012341/SRR12638137 GSM4780724 SRA1125264 SRX9120194 RNA-Seq PAIRED SRP282347 PRJNA663331 157915 6 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12638138 https://sra-download.ncbi.nlm.nih.gov/traces/sra79/SRR/012341/SRR12638138 GSM4780725 SRA1125264 SRX9120195 RNA-Seq PAIRED SRP282347 PRJNA663331 157915 7 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12638139 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/012341/SRR12638139 GSM4780726 SRA1125264 SRX9120196 RNA-Seq PAIRED SRP282347 PRJNA663331 157915 8 Valerie Ducret Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical perform Valerie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet, Anthony Herrel Differential expression analysis between four endurant and four burst-performant males 33757428 57943 SRP282347 SRR12638140 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/012341/SRR12638140 GSM4780727 SRA1125264 SRX9120197 RNA-Seq PAIRED SRP282347 PRJNA663331 158246 1 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676663 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/012379/SRR12676663 GSM4795812 SRA1128294 SRX9156828 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 2 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676664 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/012379/SRR12676664 GSM4795813 SRA1128294 SRX9156829 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 3 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676665 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/012379/SRR12676665 GSM4795814 SRA1128294 SRX9156830 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 4 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676666 https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/012379/SRR12676666 GSM4795815 SRA1128294 SRX9156831 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 5 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676667 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/012379/SRR12676667 GSM4795816 SRA1128294 SRX9156832 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 6 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676668 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/012379/SRR12676668 GSM4795817 SRA1128294 SRX9156833 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 7 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676669 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/012379/SRR12676669 GSM4795818 SRA1128294 SRX9156834 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 8 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676670 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/012379/SRR12676670 GSM4795819 SRA1128294 SRX9156835 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 9 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676671 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/012379/SRR12676671 GSM4795820 SRA1128294 SRX9156836 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 10 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676672 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/012379/SRR12676672 GSM4795821 SRA1128294 SRX9156837 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 11 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676673 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/012379/SRR12676673 GSM4795822 SRA1128294 SRX9156838 RNA-Seq PAIRED SRP284001 PRJNA664513 158246 12 Kimberly Mowry L-bodies are novel RNA-protein condensates driving RNA transport in Xenopus oocytes RNP granules are membrane-less compartments within cells, formed by phase separation, that function as regulatory hubs for diverse biological processe Kimberly Mowry, Christopher Neil, Samantha Jeschonek, Sarah Cabral, Liam O'Connell, Jessica Otis, Erin Powrie, Timothy Wood, Kimberly Mowry 4 replicates of 3 conditions were analyzed, the conditions being RNA collected after immunoprecipitating Xenopus oocyte lysates with different antibodies. The experimental conditions were precipitated with Staufen and hnRNPab antibodies and the control condition precipitated with IgG. 0 57691 SRP284001 SRR12676674 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/012379/SRR12676674 GSM4795823 SRA1128294 SRX9156839 RNA-Seq PAIRED SRP284001 PRJNA664513 158331 1 Anneke Kakebeen Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to regenerated until desired collection timepoint. The regenerated tail was isolated from the tadpole and cells were dissociated into single cell suspension using Liberase, washed in PBS and sorted for fluoresence through an Aria III cell sorter. 33137227 57511 SRP284834 SRR12691427 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/012393/SRR12691427 GSM4797960 SRA1129693 SRX9171385 ATAC-seq PAIRED SRP284834 PRJNA664919 158331 2 Anneke Kakebeen Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to regenerated until desired collection timepoint. The regenerated tail was isolated from the tadpole and cells were dissociated into single cell suspension using Liberase, washed in PBS and sorted for fluoresence through an Aria III cell sorter. 33137227 57511 SRP284834 SRR12691428 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/012393/SRR12691428 GSM4797961 SRA1129693 SRX9171386 ATAC-seq PAIRED SRP284834 PRJNA664919 158664 1 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 SRR12730396 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/012432/SRR12730396 GSM4805183 SRA1133787 SRX9203751 RNA-Seq SINGLE SRP285632 PRJNA666158 158664 2 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 SRR12730397 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/012432/SRR12730397 GSM4805184 SRA1133787 SRX9203752 RNA-Seq SINGLE SRP285632 PRJNA666158 158664 3 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 SRR12730398 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/012432/SRR12730398 GSM4805185 SRA1133787 SRX9203753 RNA-Seq SINGLE SRP285632 PRJNA666158 158664 4 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 SRR12730399 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/012432/SRR12730399 GSM4805186 SRA1133787 SRX9203754 RNA-Seq SINGLE SRP285632 PRJNA666158 158664 5 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 SRR12730400 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/012432/SRR12730400 GSM4805187 SRA1133787 SRX9203755 RNA-Seq SINGLE SRP285632 PRJNA666158 158664 6 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 SRR12730401 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/012432/SRR12730401 GSM4805188 SRA1133787 SRX9203756 RNA-Seq SINGLE SRP285632 PRJNA666158 158849 1 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749591 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/012450/SRR12749591 GSM4812175 SRA1136461 SRX9221548 RNA-Seq PAIRED SRP285948 PRJNA666689 158849 2 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749592 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/012450/SRR12749592 GSM4812176 SRA1136461 SRX9221549 RNA-Seq PAIRED SRP285948 PRJNA666689 158849 3 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749593 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/012450/SRR12749593 GSM4812177 SRA1136461 SRX9221550 RNA-Seq PAIRED SRP285948 PRJNA666689 158849 4 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749594 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/012450/SRR12749594 GSM4812178 SRA1136461 SRX9221551 RNA-Seq PAIRED SRP285948 PRJNA666689 158849 5 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749595 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/012450/SRR12749595 GSM4812179 SRA1136461 SRX9221552 RNA-Seq PAIRED SRP285948 PRJNA666689 158849 6 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749596 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/012450/SRR12749596 GSM4812180 SRA1136461 SRX9221553 RNA-Seq PAIRED SRP285948 PRJNA666689 158849 7 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749597 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/012450/SRR12749597 GSM4812181 SRA1136461 SRX9221554 RNA-Seq PAIRED SRP285948 PRJNA666689 158849 8 Jan Philipp Junker Subcellular analysis of transcriptome localization in the early zebrafish embryo We performed spatially resolved transcriptomics with sub-single-cell resolution in zebrafish embryos at the one-cell stage, which allowed us to identi Jan Philipp Junker, Karoline Holler, Anika Neuschulz, Philipp Boß, Janita Mintcheva, Roberto Arsiè, Uwe Ohler, Markus Landthaler, Jan Junker Spatial transcriptomic data (tomo-seq) from zebrafish one-cell stage embroys, mature X. laevis and X. tropicalis oocytes. Single-cell metabolic labeling (scSLAM-seq) of zebrafish embryos at 6 hpf. 0 SRP285948 SRR12749598 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/012450/SRR12749598 GSM4812182 SRA1136461 SRX9221555 RNA-Seq PAIRED SRP285948 PRJNA666689 160777 1 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975534 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/012671/SRR12975534 GSM4879075 SRA1153583 SRX9427727 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 2 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975535 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/012671/SRR12975535 GSM4879076 SRA1153583 SRX9427728 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 3 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975536 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/012671/SRR12975536 GSM4879077 SRA1153583 SRX9427729 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 4 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975537 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/012671/SRR12975537 GSM4879078 SRA1153583 SRX9427730 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 5 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975538 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/012671/SRR12975538 GSM4879079 SRA1153583 SRX9427731 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 6 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975539 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/012671/SRR12975539 GSM4879080 SRA1153583 SRX9427732 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 7 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975540 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/012671/SRR12975540 GSM4879081 SRA1153583 SRX9427733 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 8 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975541 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/012671/SRR12975541 GSM4879082 SRA1153583 SRX9427734 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 9 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975542 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/012671/SRR12975542 GSM4879083 SRA1153583 SRX9427735 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 10 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975543 https://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRR/012671/SRR12975543 GSM4879084 SRA1153583 SRX9427736 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 11 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975544 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/012671/SRR12975544 GSM4879085 SRA1153583 SRX9427737 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 12 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975545 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/012671/SRR12975545 GSM4879086 SRA1153583 SRX9427738 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 13 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975546 https://sra-download.ncbi.nlm.nih.gov/traces/sra79/SRR/012671/SRR12975546 GSM4879087 SRA1153583 SRX9427739 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 14 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975547 https://sra-download.ncbi.nlm.nih.gov/traces/sra12/SRR/012671/SRR12975547 GSM4879088 SRA1153583 SRX9427740 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 15 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975548 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/012671/SRR12975548 GSM4879089 SRA1153583 SRX9427741 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 16 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975549 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/012671/SRR12975549 GSM4879090 SRA1153583 SRX9427742 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 17 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975550 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/012671/SRR12975550 GSM4879091 SRA1153583 SRX9427743 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 18 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975551 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/012671/SRR12975551 GSM4879092 SRA1153583 SRX9427744 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 19 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975552 https://sra-download.ncbi.nlm.nih.gov/traces/sra2/SRR/012671/SRR12975552 GSM4879093 SRA1153583 SRX9427745 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 20 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975553 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/012671/SRR12975553 GSM4879094 SRA1153583 SRX9427746 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 21 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975554 https://sra-download.ncbi.nlm.nih.gov/traces/sra65/SRR/012671/SRR12975554 GSM4879095 SRA1153583 SRX9427747 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 22 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975555 https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/012671/SRR12975555 GSM4879096 SRA1153583 SRX9427748 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 23 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975556 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/012671/SRR12975556 GSM4879097 SRA1153583 SRX9427749 RNA-Seq PAIRED SRP291031 PRJNA674389 160777 24 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 SRR12975557 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/012671/SRR12975557 GSM4879098 SRA1153583 SRX9427750 RNA-Seq PAIRED SRP291031 PRJNA674389 161247 1 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 SRR13023967 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/012718/SRR13023967 GSM4903938 SRA1157610 SRX9474201 RNA-Seq PAIRED SRP292400 PRJNA677830 161249 1 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates. 37116939 59747 SRP292402 SRR13023975 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/012718/SRR13023975 GSM4903946 SRA1157612 SRX9474209 RNA-Seq SINGLE SRP292402 PRJNA677828 161250 1 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 SRR13023987 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/012718/SRR13023987 GSM4903958 SRA1157613 SRX9474221 RNA-Seq PAIRED SRP292404 PRJNA677827 161714 1 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080669 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/012774/SRR13080669 GSM4913144 SRA1160944 SRX9527433 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 2 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080670 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/012774/SRR13080670 GSM4913145 SRA1160944 SRX9527434 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 3 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080671 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/012774/SRR13080671 GSM4913146 SRA1160944 SRX9527435 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 4 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080672 https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/012774/SRR13080672 GSM4913147 SRA1160944 SRX9527437 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 5 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080673 https://sra-download.ncbi.nlm.nih.gov/traces/sra21/SRR/012774/SRR13080673 GSM4913148 SRA1160944 SRX9527438 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 6 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080674 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/012774/SRR13080674 GSM4913149 SRA1160944 SRX9527439 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 7 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080675 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/012774/SRR13080675 GSM4913150 SRA1160944 SRX9527440 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 8 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080676 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/012774/SRR13080676 GSM4913151 SRA1160944 SRX9527441 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 9 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080677 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/012774/SRR13080677 GSM4913152 SRA1160944 SRX9527442 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 10 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080678 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/012774/SRR13080678 GSM4913153 SRA1160944 SRX9527443 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 11 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080679 https://sra-download.ncbi.nlm.nih.gov/traces/sra52/SRR/012774/SRR13080679 GSM4913154 SRA1160944 SRX9527444 RNA-Seq PAIRED SRP293086 PRJNA679241 161714 12 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis 33802526 57996 SRP293086 SRR13080680 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/012774/SRR13080680 GSM4913155 SRA1160944 SRX9527445 RNA-Seq PAIRED SRP293086 PRJNA679241 163875 1 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308360 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/012996/SRR13308360 GSM4988988 SRA1177934 SRX9736366 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 2 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308361 https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/012996/SRR13308361 GSM4988989 SRA1177934 SRX9736367 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 3 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308362 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/012996/SRR13308362 GSM4988990 SRA1177934 SRX9736368 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 4 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308363 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/012996/SRR13308363 GSM4988991 SRA1177934 SRX9736353 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 5 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308364 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/012996/SRR13308364 GSM4988992 SRA1177934 SRX9736354 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 6 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308365 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/012996/SRR13308365 GSM4988993 SRA1177934 SRX9736355 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 7 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308366 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/012996/SRR13308366 GSM4988994 SRA1177934 SRX9736356 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 8 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308367 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/012996/SRR13308367 GSM4988995 SRA1177934 SRX9736357 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 9 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308368 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/012996/SRR13308368 GSM4988996 SRA1177934 SRX9736358 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 10 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308369 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/012996/SRR13308369 GSM4988997 SRA1177934 SRX9736359 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 11 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308370 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/012996/SRR13308370 GSM4988998 SRA1177934 SRX9736360 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 12 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308371 https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/012996/SRR13308371 GSM4988999 SRA1177934 SRX9736361 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 13 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308372 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/012996/SRR13308372 GSM4989000 SRA1177934 SRX9736362 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 14 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308373 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/012996/SRR13308373 GSM4989001 SRA1177934 SRX9736363 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 15 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308374 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/012996/SRR13308374 GSM4989002 SRA1177934 SRX9736364 RNA-Seq PAIRED SRP299616 PRJNA687987 163875 16 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used duplicated biological replicates. To evaluate the transcriptonal response among time, we sampled at two time points: 3 hours after PM treatment, and 9 hours after the treatment. 0 60224 SRP299616 SRR13308375 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/012996/SRR13308375 GSM4989003 SRA1177934 SRX9736365 RNA-Seq PAIRED SRP299616 PRJNA687987 164204 1 Juan Larraín Cellular response to spinal cord injury in regenerative and non-regenerative stages in Xenopus laevis. Background: The efficient regenerative abilities at larvae stages followed by a non-regenerative response after metamorphosis in froglets makes Xenopu Juan Larraín, Gabriela Edwards-Faret, Karina González-Pinto, Arantxa Cebrián-Silla, Johany Peñailillo, José García-Verdugo Characterization of cell population GFAP::EGFP from the transgenic line Xla.Tg(Dre.gfap:EGFP)Larra in regenerative stages of Xenopus laevis 33526076 57773 SRP300206 SRR13348911 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/013036/SRR13348911 GSM5003918 SRA1179899 SRX9774935 RNA-Seq PAIRED SRP300206 PRJNA689548 164204 2 Juan Larraín Cellular response to spinal cord injury in regenerative and non-regenerative stages in Xenopus laevis. Background: The efficient regenerative abilities at larvae stages followed by a non-regenerative response after metamorphosis in froglets makes Xenopu Juan Larraín, Gabriela Edwards-Faret, Karina González-Pinto, Arantxa Cebrián-Silla, Johany Peñailillo, José García-Verdugo Characterization of cell population GFAP::EGFP from the transgenic line Xla.Tg(Dre.gfap:EGFP)Larra in regenerative stages of Xenopus laevis 33526076 57773 SRP300206 SRR13348912 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/013036/SRR13348912 GSM5003919 SRA1179899 SRX9774936 RNA-Seq PAIRED SRP300206 PRJNA689548 164434 1 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386548 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386548/SRR13386548.1 GSM5009568 SRA1181562 SRX9805835 Hi-C PAIRED SRP300874 PRJNA690708 164434 2 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386549 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386549/SRR13386549.1 GSM5009569 SRA1181562 SRX9805836 Hi-C PAIRED SRP300874 PRJNA690708 164434 3 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386550 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386550/SRR13386550.1 GSM5009570 SRA1181562 SRX9805837 Hi-C PAIRED SRP300874 PRJNA690708 164434 4 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386551 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386551/SRR13386551.1 GSM5009571 SRA1181562 SRX9805838 Hi-C PAIRED SRP300874 PRJNA690708 164434 5 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386552 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386552/SRR13386552.1 GSM5009572 SRA1181562 SRX9805839 Hi-C PAIRED SRP300874 PRJNA690708 164434 6 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386553 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386553/SRR13386553.1 GSM5009573 SRA1181562 SRX9805840 Hi-C PAIRED SRP300874 PRJNA690708 164434 7 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386554 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386554/SRR13386554.1 GSM5009574 SRA1181562 SRX9805841 Hi-C PAIRED SRP300874 PRJNA690708 164434 8 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386555 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386555/SRR13386555.1 GSM5009575 SRA1181562 SRX9805842 Hi-C PAIRED SRP300874 PRJNA690708 164434 9 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386556 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386556/SRR13386556.1 GSM5009576 SRA1181562 SRX9805843 Hi-C PAIRED SRP300874 PRJNA690708 164434 10 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386557 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386557/SRR13386557.1 GSM5009577 SRA1181562 SRX9805844 Hi-C PAIRED SRP300874 PRJNA690708 164434 11 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386558 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386558/SRR13386558.1 GSM5009578 SRA1181562 SRX9805845 Hi-C PAIRED SRP300874 PRJNA690708 164434 12 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386559 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386559/SRR13386559.1 GSM5009579 SRA1181562 SRX9805846 Hi-C PAIRED SRP300874 PRJNA690708 164434 13 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386560 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386560/SRR13386560.1 GSM5009580 SRA1181562 SRX9805847 Hi-C PAIRED SRP300874 PRJNA690708 164434 14 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386561 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386561/SRR13386561.1 GSM5009581 SRA1181562 SRX9805848 Hi-C PAIRED SRP300874 PRJNA690708 164434 15 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386562 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386562/SRR13386562.1 GSM5009582 SRA1181562 SRX9805849 Hi-C PAIRED SRP300874 PRJNA690708 164434 16 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386563 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386563/SRR13386563.1 GSM5009583 SRA1181562 SRX9805850 Hi-C PAIRED SRP300874 PRJNA690708 164434 17 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386564 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386564/SRR13386564.1 GSM5009584 SRA1181562 SRX9805851 Hi-C PAIRED SRP300874 PRJNA690708 164434 18 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386565 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386565/SRR13386565.1 GSM5009585 SRA1181562 SRX9805852 Hi-C PAIRED SRP300874 PRJNA690708 164434 19 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386566 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386566/SRR13386566.1 GSM5009586 SRA1181562 SRX9805853 Hi-C PAIRED SRP300874 PRJNA690708 164434 20 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386567 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386567/SRR13386567.1 GSM5009587 SRA1181562 SRX9805854 Hi-C PAIRED SRP300874 PRJNA690708 164434 21 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR13386568 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13386568/SRR13386568.1 GSM5009588 SRA1181562 SRX9805855 Hi-C PAIRED SRP300874 PRJNA690708 164434 22 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR14135959 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR14135959/SRR14135959.1 GSM5224854 SRA1181562 SRX10505594 Hi-C PAIRED SRP300874 PRJNA690708 164434 23 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR14135960 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR14135960/SRR14135960.1 GSM5224855 SRA1181562 SRX10505595 Hi-C PAIRED SRP300874 PRJNA690708 164434 24 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR14135961 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR14135961/SRR14135961.1 GSM5224856 SRA1181562 SRX10505596 Hi-C PAIRED SRP300874 PRJNA690708 164434 25 Bastiaan Dekker Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone Bastiaan Dekker, Pavan Choppakatla, Erin  Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki Hi-C on reconstituted mitotic chromosomes in Xenopus system 34406118 58313 SRP300874 SRR14135962 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR14135962/SRR14135962.1 GSM5224857 SRA1181562 SRX10505597 Hi-C PAIRED SRP300874 PRJNA690708 165343 1 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509509 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/013192/SRR13509509 GSM5031797 SRA1186851 SRX9920972 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 2 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509510 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/013192/SRR13509510 GSM5031798 SRA1186851 SRX9920973 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 3 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509511 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/013192/SRR13509511 GSM5031799 SRA1186851 SRX9920974 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 4 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509512 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/013192/SRR13509512 GSM5031800 SRA1186851 SRX9920975 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 5 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509513 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/013192/SRR13509513 GSM5031801 SRA1186851 SRX9920976 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 6 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509514 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/013192/SRR13509514 GSM5031802 SRA1186851 SRX9920977 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 7 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509515 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/013192/SRR13509515 GSM5031803 SRA1186851 SRX9920978 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 8 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509516 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/013192/SRR13509516 GSM5031804 SRA1186851 SRX9920979 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 9 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509517 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/013192/SRR13509517 GSM5031805 SRA1186851 SRX9920980 RNA-Seq PAIRED SRP302901 PRJNA694138 165343 10 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 SRR13509518 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/013192/SRR13509518 GSM5031806 SRA1186851 SRX9920981 RNA-Seq PAIRED SRP302901 PRJNA694138 165763 1 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576990 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/013258/SRR13576990 GSM5049608 SRA1189308 SRX9975066 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 2 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576991 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/013258/SRR13576991 GSM5049609 SRA1189308 SRX9975067 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 3 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576992 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/013258/SRR13576992 GSM5049610 SRA1189308 SRX9975068 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 4 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576993 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/013258/SRR13576993 GSM5049611 SRA1189308 SRX9975069 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 5 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576994 https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/013258/SRR13576994 GSM5049612 SRA1189308 SRX9975070 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 6 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576995 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/013258/SRR13576995 GSM5049613 SRA1189308 SRX9975071 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 7 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576996 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/013258/SRR13576996 GSM5049614 SRA1189308 SRX9975072 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 8 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576997 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/013258/SRR13576997 GSM5049615 SRA1189308 SRX9975073 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 9 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576998 https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/013258/SRR13576998 GSM5049616 SRA1189308 SRX9975074 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 10 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13576999 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/013258/SRR13576999 GSM5049617 SRA1189308 SRX9975075 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 11 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577000 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/013258/SRR13577000 GSM5049618 SRA1189308 SRX9975076 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 12 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577001 https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/013258/SRR13577001 GSM5049619 SRA1189308 SRX9975077 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 13 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577002 https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/013258/SRR13577002 GSM5049620 SRA1189308 SRX9975078 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 14 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577003 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/013258/SRR13577003 GSM5049621 SRA1189308 SRX9975079 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 15 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577004 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/013258/SRR13577004 GSM5049622 SRA1189308 SRX9975080 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 16 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577005 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/013258/SRR13577005 GSM5049623 SRA1189308 SRX9975081 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 17 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577006 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/013258/SRR13577006 GSM5049624 SRA1189308 SRX9975082 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 18 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577007 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/013258/SRR13577007 GSM5049625 SRA1189308 SRX9975083 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 19 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577008 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/013258/SRR13577008 GSM5049626 SRA1189308 SRX9975084 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 20 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577009 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/013258/SRR13577009 GSM5049627 SRA1189308 SRX9975085 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 21 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577010 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/013258/SRR13577010 GSM5049628 SRA1189308 SRX9975086 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 22 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577011 https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/013258/SRR13577011 GSM5049629 SRA1189308 SRX9975087 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 23 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577012 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/013258/SRR13577012 GSM5049630 SRA1189308 SRX9975088 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 24 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577013 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/013258/SRR13577013 GSM5049631 SRA1189308 SRX9975089 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 25 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577014 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/013258/SRR13577014 GSM5049632 SRA1189308 SRX9975090 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 26 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577015 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/013258/SRR13577015 GSM5049633 SRA1189308 SRX9975091 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 27 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577016 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/013258/SRR13577016 GSM5049634 SRA1189308 SRX9975092 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 28 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577017 https://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRR/013258/SRR13577017 GSM5049635 SRA1189308 SRX9975093 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 29 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577018 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/013258/SRR13577018 GSM5049636 SRA1189308 SRX9975094 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 30 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577019 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/013258/SRR13577019 GSM5049637 SRA1189308 SRX9975095 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 31 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577020 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/013258/SRR13577020 GSM5049638 SRA1189308 SRX9975096 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 32 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577021 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/013258/SRR13577021 GSM5049639 SRA1189308 SRX9975097 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 33 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577022 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/013258/SRR13577022 GSM5049640 SRA1189308 SRX9975098 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 34 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577023 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/013258/SRR13577023 GSM5049641 SRA1189308 SRX9975099 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 35 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577024 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/013258/SRR13577024 GSM5049642 SRA1189308 SRX9975100 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 36 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577025 https://sra-download.ncbi.nlm.nih.gov/traces/sra33/SRR/013258/SRR13577025 GSM5049643 SRA1189308 SRX9975101 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 37 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577026 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/013258/SRR13577026 GSM5049644 SRA1189308 SRX9975102 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 38 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577027 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/013258/SRR13577027 GSM5049645 SRA1189308 SRX9975103 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 39 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577028 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/013258/SRR13577028 GSM5049646 SRA1189308 SRX9975104 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 40 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577029 https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRR/013258/SRR13577029 GSM5049647 SRA1189308 SRX9975105 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 41 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577030 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/013258/SRR13577030 GSM5049648 SRA1189308 SRX9975106 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 42 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577031 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/013258/SRR13577031 GSM5049649 SRA1189308 SRX9975107 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 43 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577032 https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/013258/SRR13577032 GSM5049650 SRA1189308 SRX9975108 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 44 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577033 https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/013258/SRR13577033 GSM5049651 SRA1189308 SRX9975109 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 45 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577034 https://sra-download.ncbi.nlm.nih.gov/traces/sra11/SRR/013258/SRR13577034 GSM5049652 SRA1189308 SRX9975110 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 46 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577035 https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/013258/SRR13577035 GSM5049653 SRA1189308 SRX9975111 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 47 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577036 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/013258/SRR13577036 GSM5049654 SRA1189308 SRX9975112 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 48 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577037 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/013258/SRR13577037 GSM5049655 SRA1189308 SRX9975113 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 49 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577038 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/013258/SRR13577038 GSM5049656 SRA1189308 SRX9975114 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 50 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577039 https://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRR/013258/SRR13577039 GSM5049657 SRA1189308 SRX9975115 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 51 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577040 https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/013258/SRR13577040 GSM5049658 SRA1189308 SRX9975116 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 52 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577041 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/013258/SRR13577041 GSM5049659 SRA1189308 SRX9975117 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 53 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577042 https://sra-download.ncbi.nlm.nih.gov/traces/sra30/SRR/013258/SRR13577042 GSM5049660 SRA1189308 SRX9975118 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 54 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577043 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/013258/SRR13577043 GSM5049661 SRA1189308 SRX9975119 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 55 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577044 https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/013258/SRR13577044 GSM5049662 SRA1189308 SRX9975120 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 56 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577045 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/013258/SRR13577045 GSM5049663 SRA1189308 SRX9975121 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 57 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577046 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/013258/SRR13577046 GSM5049664 SRA1189308 SRX9975122 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 58 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577047 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/013258/SRR13577047 GSM5049665 SRA1189308 SRX9975123 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 59 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577048 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/013258/SRR13577048 GSM5049666 SRA1189308 SRX9975124 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 60 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577049 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/013258/SRR13577049 GSM5049667 SRA1189308 SRX9975125 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 61 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577050 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/013258/SRR13577050 GSM5049668 SRA1189308 SRX9975126 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 62 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577051 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/013258/SRR13577051 GSM5049669 SRA1189308 SRX9975127 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 63 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577052 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/013258/SRR13577052 GSM5049670 SRA1189308 SRX9975128 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 64 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577053 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/013258/SRR13577053 GSM5049671 SRA1189308 SRX9975129 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 65 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577054 https://sra-download.ncbi.nlm.nih.gov/traces/sra68/SRR/013258/SRR13577054 GSM5049672 SRA1189308 SRX9975130 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 66 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577055 https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/013258/SRR13577055 GSM5049673 SRA1189308 SRX9975131 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 67 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577056 https://sra-download.ncbi.nlm.nih.gov/traces/sra7/SRR/013258/SRR13577056 GSM5049674 SRA1189308 SRX9975132 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 68 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577057 https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/013258/SRR13577057 GSM5049675 SRA1189308 SRX9975133 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 69 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577058 https://sra-download.ncbi.nlm.nih.gov/traces/sra35/SRR/013258/SRR13577058 GSM5049676 SRA1189308 SRX9975134 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 70 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577059 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/013258/SRR13577059 GSM5049677 SRA1189308 SRX9975135 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 71 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577060 https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/013258/SRR13577060 GSM5049678 SRA1189308 SRX9975136 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 72 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577061 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/013258/SRR13577061 GSM5049679 SRA1189308 SRX9975137 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 73 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577062 https://sra-download.ncbi.nlm.nih.gov/traces/sra4/SRR/013258/SRR13577062 GSM5049680 SRA1189308 SRX9975138 RNA-Seq PAIRED SRP303801 PRJNA697849 165763 74 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 SRR13577063 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/013258/SRR13577063 GSM5049681 SRA1189308 SRX9975139 RNA-Seq PAIRED SRP303801 PRJNA697849 165901 1 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600548 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600548/SRR13600548.1 GSM5057655 SRA1189998 SRX9994960 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 2 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600549 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600549/SRR13600549.1 GSM5057656 SRA1189998 SRX9994961 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 3 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600550 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600550/SRR13600550.1 GSM5057657 SRA1189998 SRX9994962 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 4 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600551 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600551/SRR13600551.1 GSM5057658 SRA1189998 SRX9994963 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 5 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600552 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600552/SRR13600552.1 GSM5057659 SRA1189998 SRX9994964 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 6 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600553 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600553/SRR13600553.1 GSM5057660 SRA1189998 SRX9994965 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 7 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600554 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600554/SRR13600554.1 GSM5057661 SRA1189998 SRX9994966 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 8 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600555 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600555/SRR13600555.1 GSM5057662 SRA1189998 SRX9994967 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 9 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600557 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600557/SRR13600557.1 GSM5057663 SRA1189998 SRX9994968 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 10 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600558 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600558/SRR13600558.1 GSM5057664 SRA1189998 SRX9994969 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 11 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600560 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600560/SRR13600560.1 GSM5057665 SRA1189998 SRX9994970 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 12 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600561 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600561/SRR13600561.1 GSM5057666 SRA1189998 SRX9994971 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 13 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600563 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600563/SRR13600563.1 GSM5057667 SRA1189998 SRX9994972 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 14 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600564 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600564/SRR13600564.1 GSM5057668 SRA1189998 SRX9994973 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 15 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600565 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600565/SRR13600565.1 GSM5057669 SRA1189998 SRX9994974 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 16 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600566 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600566/SRR13600566.1 GSM5057670 SRA1189998 SRX9994975 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 17 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600567 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600567/SRR13600567.1 GSM5057671 SRA1189998 SRX9994976 RNA-Seq PAIRED SRP304111 PRJNA698552 165901 18 Tobias Gerber Fibroblast Dedifferentiation as a Determinant of Successful Regeneration Limb regeneration, while observed lifelong in salamanders, is restricted to pre-metamorphic stages in Xenopus laevis frogs. After amputation, post-met Tobias Gerber, Barbara Treutlein Tissue grafting, single-cell transcriptomics, reporter lineage tracking and cell transplantions were used to deconstruct cell compositions and to reconstruct lineage relationships aiming to find determinants of the successful regeneration in axolotl compared to the incomplete regenration in frogs. 34004152 58108 SRP304111 SRR13600568 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13600568/SRR13600568.1 GSM5057672 SRA1189998 SRX9994977 RNA-Seq PAIRED SRP304111 PRJNA698552 166455 1 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13667998 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13667998/SRR13667998.1 GSM5071357 SRA1194004 SRX10059503 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 2 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13667999 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13667999/SRR13667999.1 GSM5071358 SRA1194004 SRX10059504 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 3 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668000 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-23/SRR13668000/SRR13668000.1 GSM5071359 SRA1194004 SRX10059505 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 4 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668001 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-24/SRR13668001/SRR13668001.1 GSM5071360 SRA1194004 SRX10059506 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 5 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668002 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13668002/SRR13668002.1 GSM5071361 SRA1194004 SRX10059507 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 6 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668003 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-22/SRR13668003/SRR13668003.1 GSM5071362 SRA1194004 SRX10059508 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 7 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668004 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-22/SRR13668004/SRR13668004.1 GSM5071363 SRA1194004 SRX10059509 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 8 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668005 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-23/SRR13668005/SRR13668005.1 GSM5071364 SRA1194004 SRX10059510 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 9 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668006 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-22/SRR13668006/SRR13668006.1 GSM5071365 SRA1194004 SRX10059511 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 10 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668007 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-23/SRR13668007/SRR13668007.1 GSM5071366 SRA1194004 SRX10059512 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 11 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668008 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-23/SRR13668008/SRR13668008.1 GSM5071367 SRA1194004 SRX10059513 RNA-Seq PAIRED SRP305512 PRJNA700989 166455 12 Ian Boys Poly(I:C) transfection time course in Xenopus laevis A6 cells This study was designed to identify Xenopus laevis genes that respond to stimulation with an immune agonist, poly(I:C). Ian Boys, Ian Boys, John Schoggins 12 samples in 4 groups with 3 biological replicates each. Treatment time course of 6 12 and 24 hours of poly(I:C) transfection, with a mock-transfected reference. 34014925 58124 SRP305512 SRR13668009 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos3/sra-pub-run-24/SRR13668009/SRR13668009.1 GSM5071368 SRA1194004 SRX10059514 RNA-Seq PAIRED SRP305512 PRJNA700989 166544 1 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679779 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679779/SRR13679779.1 GSM5074337 SRA1194491 SRX10069179 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 2 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679780 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679780/SRR13679780.1 GSM5074338 SRA1194491 SRX10069171 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 3 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679781 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679781/SRR13679781.1 GSM5074339 SRA1194491 SRX10069172 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 4 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679782 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679782/SRR13679782.1 GSM5074340 SRA1194491 SRX10069173 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 5 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679783 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679783/SRR13679783.1 GSM5074341 SRA1194491 SRX10069174 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 6 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679784 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679784/SRR13679784.1 GSM5074341 SRA1194491 SRX10069174 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 7 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679785 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679785/SRR13679785.1 GSM5074342 SRA1194491 SRX10069175 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 8 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679786 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679786/SRR13679786.1 GSM5074342 SRA1194491 SRX10069175 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 9 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679787 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679787/SRR13679787.1 GSM5074343 SRA1194491 SRX10069176 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 10 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679788 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679788/SRR13679788.1 GSM5074344 SRA1194491 SRX10069177 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 11 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679789 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679789/SRR13679789.1 GSM5074345 SRA1194491 SRX10069178 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 12 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679790 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679790/SRR13679790.1 GSM5074346 SRA1194491 SRX10069180 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 13 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679791 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679791/SRR13679791.1 GSM5074347 SRA1194491 SRX10069181 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 14 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679792 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679792/SRR13679792.1 GSM5074348 SRA1194491 SRX10069182 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 15 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679793 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679793/SRR13679793.1 GSM5074349 SRA1194491 SRX10069183 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 16 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679794 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679794/SRR13679794.1 GSM5074350 SRA1194491 SRX10069184 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 17 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679795 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679795/SRR13679795.1 GSM5074351 SRA1194491 SRX10069185 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 18 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679796 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679796/SRR13679796.1 GSM5074352 SRA1194491 SRX10069186 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 19 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679797 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679797/SRR13679797.1 GSM5074353 SRA1194491 SRX10069187 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 20 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679798 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679798/SRR13679798.1 GSM5074354 SRA1194491 SRX10069188 OTHER SINGLE SRP305686 PRJNA701262 166544 21 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679799 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679799/SRR13679799.1 GSM5074355 SRA1194491 SRX10069189 OTHER SINGLE SRP305686 PRJNA701262 166544 22 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679800 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679800/SRR13679800.1 GSM5074356 SRA1194491 SRX10069190 OTHER SINGLE SRP305686 PRJNA701262 166544 23 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679801 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679801/SRR13679801.1 GSM5074357 SRA1194491 SRX10069191 OTHER SINGLE SRP305686 PRJNA701262 166544 24 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679802 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679802/SRR13679802.1 GSM5074358 SRA1194491 SRX10069192 OTHER SINGLE SRP305686 PRJNA701262 166544 25 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679803 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679803/SRR13679803.1 GSM5074358 SRA1194491 SRX10069192 OTHER SINGLE SRP305686 PRJNA701262 166544 26 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679804 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679804/SRR13679804.1 GSM5074359 SRA1194491 SRX10069193 OTHER SINGLE SRP305686 PRJNA701262 166544 27 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679805 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679805/SRR13679805.1 GSM5074359 SRA1194491 SRX10069193 OTHER SINGLE SRP305686 PRJNA701262 166544 28 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679806 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679806/SRR13679806.1 GSM5074360 SRA1194491 SRX10069194 OTHER SINGLE SRP305686 PRJNA701262 166544 29 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679807 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679807/SRR13679807.1 GSM5074361 SRA1194491 SRX10069195 OTHER SINGLE SRP305686 PRJNA701262 166544 30 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679808 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679808/SRR13679808.1 GSM5074362 SRA1194491 SRX10069196 OTHER SINGLE SRP305686 PRJNA701262 166544 31 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679809 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679809/SRR13679809.1 GSM5074363 SRA1194491 SRX10069197 OTHER SINGLE SRP305686 PRJNA701262 166544 32 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679810 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679810/SRR13679810.1 GSM5074364 SRA1194491 SRX10069198 OTHER SINGLE SRP305686 PRJNA701262 166544 33 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679811 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679811/SRR13679811.1 GSM5074365 SRA1194491 SRX10069199 OTHER SINGLE SRP305686 PRJNA701262 166544 34 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679812 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679812/SRR13679812.1 GSM5074366 SRA1194491 SRX10069200 OTHER SINGLE SRP305686 PRJNA701262 166544 35 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679813 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679813/SRR13679813.1 GSM5074367 SRA1194491 SRX10069201 OTHER SINGLE SRP305686 PRJNA701262 166544 36 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679814 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679814/SRR13679814.1 GSM5074368 SRA1194491 SRX10069202 OTHER SINGLE SRP305686 PRJNA701262 166544 37 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679815 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679815/SRR13679815.1 GSM5074369 SRA1194491 SRX10069203 OTHER SINGLE SRP305686 PRJNA701262 166544 38 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679816 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679816/SRR13679816.1 GSM5074370 SRA1194491 SRX10069204 OTHER PAIRED SRP305686 PRJNA701262 166544 39 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679817 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679817/SRR13679817.1 GSM5074371 SRA1194491 SRX10069205 OTHER PAIRED SRP305686 PRJNA701262 166544 40 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679818 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679818/SRR13679818.1 GSM5074372 SRA1194491 SRX10069206 OTHER PAIRED SRP305686 PRJNA701262 166544 41 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679819 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679819/SRR13679819.1 GSM5074373 SRA1194491 SRX10069207 OTHER PAIRED SRP305686 PRJNA701262 166544 42 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679820 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679820/SRR13679820.1 GSM5074374 SRA1194491 SRX10069208 OTHER PAIRED SRP305686 PRJNA701262 166544 43 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679821 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679821/SRR13679821.1 GSM5074374 SRA1194491 SRX10069208 OTHER PAIRED SRP305686 PRJNA701262 166544 44 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679822 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679822/SRR13679822.1 GSM5074375 SRA1194491 SRX10069209 OTHER PAIRED SRP305686 PRJNA701262 166544 45 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679823 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679823/SRR13679823.1 GSM5074376 SRA1194491 SRX10069210 OTHER PAIRED SRP305686 PRJNA701262 166544 46 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679824 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679824/SRR13679824.1 GSM5074376 SRA1194491 SRX10069210 OTHER PAIRED SRP305686 PRJNA701262 166544 47 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679825 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679825/SRR13679825.1 GSM5074377 SRA1194491 SRX10069211 OTHER PAIRED SRP305686 PRJNA701262 166544 48 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679826 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679826/SRR13679826.1 GSM5074377 SRA1194491 SRX10069211 OTHER PAIRED SRP305686 PRJNA701262 166544 49 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679827 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679827/SRR13679827.1 GSM5074378 SRA1194491 SRX10069212 OTHER PAIRED SRP305686 PRJNA701262 166544 50 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679828 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679828/SRR13679828.1 GSM5074379 SRA1194491 SRX10069213 OTHER PAIRED SRP305686 PRJNA701262 166544 51 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679829 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679829/SRR13679829.1 GSM5074379 SRA1194491 SRX10069213 OTHER PAIRED SRP305686 PRJNA701262 166544 52 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679830 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679830/SRR13679830.1 GSM5074380 SRA1194491 SRX10069214 OTHER PAIRED SRP305686 PRJNA701262 166544 53 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679831 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679831/SRR13679831.1 GSM5074381 SRA1194491 SRX10069215 OTHER PAIRED SRP305686 PRJNA701262 166544 54 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679832 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679832/SRR13679832.1 GSM5074382 SRA1194491 SRX10069216 OTHER PAIRED SRP305686 PRJNA701262 166544 55 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679833 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679833/SRR13679833.1 GSM5074383 SRA1194491 SRX10069217 OTHER PAIRED SRP305686 PRJNA701262 166544 56 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679834 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679834/SRR13679834.1 GSM5074384 SRA1194491 SRX10069218 OTHER PAIRED SRP305686 PRJNA701262 166544 57 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679835 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679835/SRR13679835.1 GSM5074385 SRA1194491 SRX10069219 OTHER PAIRED SRP305686 PRJNA701262 166544 58 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679836 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679836/SRR13679836.1 GSM5074386 SRA1194491 SRX10069220 OTHER PAIRED SRP305686 PRJNA701262 166544 59 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679837 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679837/SRR13679837.1 GSM5074387 SRA1194491 SRX10069221 OTHER PAIRED SRP305686 PRJNA701262 166544 60 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679838 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679838/SRR13679838.1 GSM5074388 SRA1194491 SRX10069222 OTHER PAIRED SRP305686 PRJNA701262 166544 61 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679839 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679839/SRR13679839.1 GSM5074389 SRA1194491 SRX10069223 OTHER PAIRED SRP305686 PRJNA701262 166544 62 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679840 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679840/SRR13679840.1 GSM5074390 SRA1194491 SRX10069224 OTHER PAIRED SRP305686 PRJNA701262 166544 63 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679841 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679841/SRR13679841.1 GSM5074391 SRA1194491 SRX10069225 OTHER PAIRED SRP305686 PRJNA701262 166544 64 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679842 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679842/SRR13679842.1 GSM5074392 SRA1194491 SRX10069226 OTHER PAIRED SRP305686 PRJNA701262 166544 65 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679843 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679843/SRR13679843.1 GSM5074393 SRA1194491 SRX10069227 OTHER PAIRED SRP305686 PRJNA701262 166544 66 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679844 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679844/SRR13679844.1 GSM5074394 SRA1194491 SRX10069228 OTHER PAIRED SRP305686 PRJNA701262 166544 67 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679845 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679845/SRR13679845.1 GSM5074395 SRA1194491 SRX10069229 OTHER PAIRED SRP305686 PRJNA701262 166544 68 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679846 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679846/SRR13679846.1 GSM5074396 SRA1194491 SRX10069230 OTHER PAIRED SRP305686 PRJNA701262 166544 69 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679847 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679847/SRR13679847.1 GSM5074397 SRA1194491 SRX10069231 OTHER PAIRED SRP305686 PRJNA701262 166544 70 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679848 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679848/SRR13679848.1 GSM5074398 SRA1194491 SRX10069232 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 71 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679849 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679849/SRR13679849.1 GSM5074399 SRA1194491 SRX10069233 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 72 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679850 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679850/SRR13679850.1 GSM5074400 SRA1194491 SRX10069234 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 73 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679851 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679851/SRR13679851.1 GSM5074401 SRA1194491 SRX10069235 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 74 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679852 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679852/SRR13679852.1 GSM5074402 SRA1194491 SRX10069236 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 75 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679853 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679853/SRR13679853.1 GSM5074403 SRA1194491 SRX10069237 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 76 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679854 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679854/SRR13679854.1 GSM5074404 SRA1194491 SRX10069238 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 77 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679855 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679855/SRR13679855.1 GSM5074405 SRA1194491 SRX10069239 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 78 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679856 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679856/SRR13679856.1 GSM5074406 SRA1194491 SRX10069240 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 79 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679857 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679857/SRR13679857.1 GSM5074407 SRA1194491 SRX10069241 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 80 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679858 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679858/SRR13679858.1 GSM5074408 SRA1194491 SRX10069242 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 81 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679859 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679859/SRR13679859.1 GSM5074409 SRA1194491 SRX10069243 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 82 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679860 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679860/SRR13679860.1 GSM5074410 SRA1194491 SRX10069244 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 83 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679861 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679861/SRR13679861.1 GSM5074411 SRA1194491 SRX10069245 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 84 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679862 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679862/SRR13679862.1 GSM5074412 SRA1194491 SRX10069246 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 85 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679863 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679863/SRR13679863.1 GSM5074413 SRA1194491 SRX10069247 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 86 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679864 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679864/SRR13679864.1 GSM5074414 SRA1194491 SRX10069248 RNA-Seq SINGLE SRP305686 PRJNA701262 166544 87 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 SRR13679865 https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-run-25/SRR13679865/SRR13679865.1 GSM5074415 SRA1194491 SRX10069249 RNA-Seq SINGLE SRP305686 PRJNA701262 167139 1 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 SRR13753019 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/013430/SRR13753019 GSM5097940 SRA1198251 SRX10139790 OTHER SINGLE SRP307184 PRJNA703058 167139 2 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 SRR13753020 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/013430/SRR13753020 GSM5097941 SRA1198251 SRX10139791 OTHER SINGLE SRP307184 PRJNA703058 167139 3 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 SRR13753021 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/013430/SRR13753021 GSM5097942 SRA1198251 SRX10139792 OTHER SINGLE SRP307184 PRJNA703058 167139 4 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 SRR13753022 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/013430/SRR13753022 GSM5097943 SRA1198251 SRX10139793 OTHER SINGLE SRP307184 PRJNA703058 168370 1 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866614 https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRR/013541/SRR13866614 GSM5137445 SRA1203437 SRX10247126 RNA-Seq PAIRED SRP309498 PRJNA707043 168370 2 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866615 https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/013541/SRR13866615 GSM5137446 SRA1203437 SRX10247127 RNA-Seq PAIRED SRP309498 PRJNA707043 168370 3 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866616 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/013541/SRR13866616 GSM5137447 SRA1203437 SRX10247128 RNA-Seq PAIRED SRP309498 PRJNA707043 168370 4 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866617 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/013541/SRR13866617 GSM5137448 SRA1203437 SRX10247129 RNA-Seq PAIRED SRP309498 PRJNA707043 168370 5 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866618 https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRR/013541/SRR13866618 GSM5137449 SRA1203437 SRX10247130 RNA-Seq PAIRED SRP309498 PRJNA707043 168370 6 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866619 https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/013541/SRR13866619 GSM5137450 SRA1203437 SRX10247131 RNA-Seq PAIRED SRP309498 PRJNA707043 168370 7 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866620 https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/013541/SRR13866620 GSM5137451 SRA1203437 SRX10247132 RNA-Seq PAIRED SRP309498 PRJNA707043 168370 8 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expressing explants (Fpinh), the third is Chordin expressing explants (Chor) and the fourth is Pinhd and chordin expressing explants (Chor-Pinh). 0 58208 SRP309498 SRR13866621 https://sra-download.ncbi.nlm.nih.gov/traces/sra42/SRR/013541/SRR13866621 GSM5137452 SRA1203437 SRX10247133 RNA-Seq PAIRED SRP309498 PRJNA707043 169088 1 Olga Dudchenko 3D genomics across the tree of life reveals condensin II as a determinant of architecture type We investigated genome folding across the eukaryotic tree of life. We find four general manifestations of genome organization at chromosome-scale that Olga Dudchenko, Erez Lieberman Aiden 26 species across the tree of life were included in the analysis, representing all subphyla of chordates, all 7 extant vertebrate classes, and 7 out of 9 major animal phyla, as well as plants and fungi. 34045355 60217 SRP175152 SRR16086864 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/015709/SRR16086864 Sample0016 SRA1300830 SRX12373245 Hi-C PAIRED SRP175152 PRJNA512907 169088 2 Olga Dudchenko 3D genomics across the tree of life reveals condensin II as a determinant of architecture type We investigated genome folding across the eukaryotic tree of life. We find four general manifestations of genome organization at chromosome-scale that Olga Dudchenko, Erez Lieberman Aiden 26 species across the tree of life were included in the analysis, representing all subphyla of chordates, all 7 extant vertebrate classes, and 7 out of 9 major animal phyla, as well as plants and fungi. 34045355 60217 SRP175152 SRR16086865 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/015709/SRR16086865 Sample0016 SRA1300830 SRX12373244 Hi-C PAIRED SRP175152 PRJNA512907 169088 3 Olga Dudchenko 3D genomics across the tree of life reveals condensin II as a determinant of architecture type We investigated genome folding across the eukaryotic tree of life. We find four general manifestations of genome organization at chromosome-scale that Olga Dudchenko, Erez Lieberman Aiden 26 species across the tree of life were included in the analysis, representing all subphyla of chordates, all 7 extant vertebrate classes, and 7 out of 9 major animal phyla, as well as plants and fungi. 34045355 60217 SRP175152 SRR16086866 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/015709/SRR16086866 Sample0016 SRA1300830 SRX12373243 Hi-C PAIRED SRP175152 PRJNA512907 169088 4 Olga Dudchenko 3D genomics across the tree of life reveals condensin II as a determinant of architecture type We investigated genome folding across the eukaryotic tree of life. We find four general manifestations of genome organization at chromosome-scale that Olga Dudchenko, Erez Lieberman Aiden 26 species across the tree of life were included in the analysis, representing all subphyla of chordates, all 7 extant vertebrate classes, and 7 out of 9 major animal phyla, as well as plants and fungi. 34045355 60217 SRP175152 SRR16086867 https://sra-download.ncbi.nlm.nih.gov/traces/sra63/SRR/015709/SRR16086867 Sample0016 SRA1300830 SRX12373242 Hi-C PAIRED SRP175152 PRJNA512907 169088 5 Olga Dudchenko 3D genomics across the tree of life reveals condensin II as a determinant of architecture type We investigated genome folding across the eukaryotic tree of life. We find four general manifestations of genome organization at chromosome-scale that Olga Dudchenko, Erez Lieberman Aiden 26 species across the tree of life were included in the analysis, representing all subphyla of chordates, all 7 extant vertebrate classes, and 7 out of 9 major animal phyla, as well as plants and fungi. 34045355 60217 SRP175152 SRR16086868 https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/015709/SRR16086868 Sample0016 SRA1300830 SRX12373241 WGS PAIRED SRP175152 PRJNA512907 169088 6 Olga Dudchenko 3D genomics across the tree of life reveals condensin II as a determinant of architecture type We investigated genome folding across the eukaryotic tree of life. We find four general manifestations of genome organization at chromosome-scale that Olga Dudchenko, Erez Lieberman Aiden 26 species across the tree of life were included in the analysis, representing all subphyla of chordates, all 7 extant vertebrate classes, and 7 out of 9 major animal phyla, as well as plants and fungi. 34045355 60217 SRP175152 SRR16086824 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/015709/SRR16086824 Sample0054 SRA1300830 SRX12373284 Hi-C PAIRED SRP175152 PRJNA512907 169088 7 Olga Dudchenko 3D genomics across the tree of life reveals condensin II as a determinant of architecture type We investigated genome folding across the eukaryotic tree of life. We find four general manifestations of genome organization at chromosome-scale that Olga Dudchenko, Erez Lieberman Aiden 26 species across the tree of life were included in the analysis, representing all subphyla of chordates, all 7 extant vertebrate classes, and 7 out of 9 major animal phyla, as well as plants and fungi. 34045355 60217 SRP175152 SRR16086807 https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/015709/SRR16086807 Sample0155 SRA1300830 SRX12373301 Hi-C PAIRED SRP175152 PRJNA512907 179257 1 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014444 https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/014662/SRR15014444 GSM5412628 SRA1253486 SRX11326453 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 2 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014445 https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/014662/SRR15014445 GSM5412629 SRA1253486 SRX11326454 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 3 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014446 https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/014662/SRR15014446 GSM5412630 SRA1253486 SRX11326455 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 4 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014447 https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/014662/SRR15014447 GSM5412631 SRA1253486 SRX11326456 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 5 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014448 https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/014662/SRR15014448 GSM5412632 SRA1253486 SRX11326457 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 6 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014449 https://sra-download.ncbi.nlm.nih.gov/traces/sra62/SRR/014662/SRR15014449 GSM5412633 SRA1253486 SRX11326458 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 7 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014450 https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/014662/SRR15014450 GSM5412634 SRA1253486 SRX11326459 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 8 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014451 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/014662/SRR15014451 GSM5412635 SRA1253486 SRX11326460 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 9 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014452 https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/014662/SRR15014452 GSM5412636 SRA1253486 SRX11326461 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 10 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014453 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/014662/SRR15014453 GSM5412637 SRA1253486 SRX11326462 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 11 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014454 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/014662/SRR15014454 GSM5412638 SRA1253486 SRX11326463 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 12 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014455 https://sra-download.ncbi.nlm.nih.gov/traces/sra65/SRR/014662/SRR15014455 GSM5412639 SRA1253486 SRX11326464 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 13 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014456 https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/014662/SRR15014456 GSM5412640 SRA1253486 SRX11326465 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 14 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014457 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/014662/SRR15014457 GSM5412641 SRA1253486 SRX11326466 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 15 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014458 https://sra-download.ncbi.nlm.nih.gov/traces/sra74/SRR/014662/SRR15014458 GSM5412642 SRA1253486 SRX11326467 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 16 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014459 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/014662/SRR15014459 GSM5412643 SRA1253486 SRX11326468 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 17 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014460 https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/014662/SRR15014460 GSM5412644 SRA1253486 SRX11326469 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 18 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014461 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/014662/SRR15014461 GSM5412645 SRA1253486 SRX11326470 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 19 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014462 https://sra-download.ncbi.nlm.nih.gov/traces/sra60/SRR/014662/SRR15014462 GSM5412646 SRA1253486 SRX11326471 RNA-Seq SINGLE SRP326481 PRJNA743018 179257 20 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequence from control mRNAseq data deposited on NCBI Gene Expression Omnibus (GEO) (accession no GSE150911) 0 60225 SRP326481 SRR15014463 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/014662/SRR15014463 GSM5412647 SRA1253486 SRX11326472 RNA-Seq SINGLE SRP326481 PRJNA743018 180671 1 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217956 https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRR/014861/SRR15217956 GSM5467454 SRA1263338 SRX11523907 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 2 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217957 https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/014861/SRR15217957 GSM5467455 SRA1263338 SRX11523908 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 3 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217958 https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/014861/SRR15217958 GSM5467456 SRA1263338 SRX11523909 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 4 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217959 https://sra-download.ncbi.nlm.nih.gov/traces/sra76/SRR/014861/SRR15217959 GSM5467457 SRA1263338 SRX11523910 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 5 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217960 https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/014861/SRR15217960 GSM5467458 SRA1263338 SRX11523911 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 6 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217961 https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/014861/SRR15217961 GSM5467459 SRA1263338 SRX11523912 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 7 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217962 https://sra-download.ncbi.nlm.nih.gov/traces/sra23/SRR/014861/SRR15217962 GSM5467460 SRA1263338 SRX11523913 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 8 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217963 https://sra-download.ncbi.nlm.nih.gov/traces/sra39/SRR/014861/SRR15217963 GSM5467461 SRA1263338 SRX11523914 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 9 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217964 https://sra-download.ncbi.nlm.nih.gov/traces/sra37/SRR/014861/SRR15217964 GSM5467462 SRA1263338 SRX11523915 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 10 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217965 https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/014861/SRR15217965 GSM5467463 SRA1263338 SRX11523916 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 11 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217966 https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRR/014861/SRR15217966 GSM5467464 SRA1263338 SRX11523917 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 12 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217967 https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRR/014861/SRR15217967 GSM5467465 SRA1263338 SRX11523918 RNA-Seq PAIRED SRP329511 PRJNA749055 180671 13 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted either all mRNA by inhibiting translation with Morpholino antisense and mismatch oligonucleotides (MOs) or only zygotic function using splice-blocking MOs or CRISPR-mediated mutagenesis. 0 60230 SRP329511 SRR15217968 https://sra-download.ncbi.nlm.nih.gov/traces/sra45/SRR/014861/SRR15217968 GSM5467466 SRA1263338 SRX11523919 RNA-Seq PAIRED SRP329511 PRJNA749055 183350 1 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System assayed by 5hmC MeDIP and by ChIP-seq for Histone Markers Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Histone ChIP seq: Two biological replicates for each of the tissues and conditions used previously for WGBS (6 pooled eyes after optic nerve crush, from the operated side and contralateral unoperated side, plus 6 pooled eyes from unoperated animals; 5 pooled hindbrains from tadpoles and 5 from frogs subject to spinal cord injury (SCI) plus 5 pooled hindbrains from age-matched, uninjured tadpoles and frogs each. 5hmC DIP seq: performed on eye samples only, otherwise collected as for WGBS and histone ChIP-seq, with replicates (2) pooled for sequencing. 34979916 58796 SRP335528 SRR15712079 https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/015343/SRR15712079 GSM5555985 SRA1288414 SRX12007731 ChIP-Seq SINGLE SRP335528 PRJNA760351 183350 2 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System assayed by 5hmC MeDIP and by ChIP-seq for Histone Markers Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Histone ChIP seq: Two biological replicates for each of the tissues and conditions used previously for WGBS (6 pooled eyes after optic nerve crush, from the operated side and contralateral unoperated side, plus 6 pooled eyes from unoperated animals; 5 pooled hindbrains from tadpoles and 5 from frogs subject to spinal cord injury (SCI) plus 5 pooled hindbrains from age-matched, uninjured tadpoles and frogs each. 5hmC DIP seq: performed on eye samples only, otherwise collected as for WGBS and histone ChIP-seq, with replicates (2) pooled for sequencing. 34979916 58796 SRP335528 SRR15712080 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/015343/SRR15712080 GSM5555986 SRA1288414 SRX12007732 ChIP-Seq SINGLE SRP335528 PRJNA760351 183350 3 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System assayed by 5hmC MeDIP and by ChIP-seq for Histone Markers Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Histone ChIP seq: Two biological replicates for each of the tissues and conditions used previously for WGBS (6 pooled eyes after optic nerve crush, from the operated side and contralateral unoperated side, plus 6 pooled eyes from unoperated animals; 5 pooled hindbrains from tadpoles and 5 from frogs subject to spinal cord injury (SCI) plus 5 pooled hindbrains from age-matched, uninjured tadpoles and frogs each. 5hmC DIP seq: performed on eye samples only, otherwise collected as for WGBS and histone ChIP-seq, with replicates (2) pooled for sequencing. 34979916 58796 SRP335528 SRR15712081 https://sra-download.ncbi.nlm.nih.gov/traces/sra32/SRR/015343/SRR15712081 GSM5555987 SRA1288414 SRX12007733 ChIP-Seq SINGLE SRP335528 PRJNA760351 183355 1 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System Characterized by Whole Genome Bisulfite Sequencing (WGBS) Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Whole Genome Bisulfite Sequencing (WGBS: 15XGenome coverage per sample) was performed on 21 samples (3 biological replicates; 7 tissues/conditions): operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at 11 days post optic nerve crush, plus surgically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at 7 days post spinal cord transection, with 5 pooled hindbrains for each sample; juvenile frog hindbrain at 7 days after spinal cord transection, plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 34979916 58796 SRP335531 SRR15712136 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15712136/SRR15712136 GSM5556097 SRA1288417 SRX12007843 Bisulfite-Seq PAIRED SRP335531 PRJNA760352 183355 2 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System Characterized by Whole Genome Bisulfite Sequencing (WGBS) Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Whole Genome Bisulfite Sequencing (WGBS: 15XGenome coverage per sample) was performed on 21 samples (3 biological replicates; 7 tissues/conditions): operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at 11 days post optic nerve crush, plus surgically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at 7 days post spinal cord transection, with 5 pooled hindbrains for each sample; juvenile frog hindbrain at 7 days after spinal cord transection, plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 34979916 58796 SRP335531 SRR15712137 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15712137/SRR15712137 GSM5556098 SRA1288417 SRX12007844 Bisulfite-Seq PAIRED SRP335531 PRJNA760352 183355 3 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System Characterized by Whole Genome Bisulfite Sequencing (WGBS) Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Whole Genome Bisulfite Sequencing (WGBS: 15XGenome coverage per sample) was performed on 21 samples (3 biological replicates; 7 tissues/conditions): operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at 11 days post optic nerve crush, plus surgically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at 7 days post spinal cord transection, with 5 pooled hindbrains for each sample; juvenile frog hindbrain at 7 days after spinal cord transection, plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 34979916 58796 SRP335531 SRR15712138 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15712138/SRR15712138 GSM5556099 SRA1288417 SRX12007845 Bisulfite-Seq PAIRED SRP335531 PRJNA760352 183355 4 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System Characterized by Whole Genome Bisulfite Sequencing (WGBS) Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Whole Genome Bisulfite Sequencing (WGBS: 15XGenome coverage per sample) was performed on 21 samples (3 biological replicates; 7 tissues/conditions): operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at 11 days post optic nerve crush, plus surgically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at 7 days post spinal cord transection, with 5 pooled hindbrains for each sample; juvenile frog hindbrain at 7 days after spinal cord transection, plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 34979916 58796 SRP335531 SRR15712139 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15712139/SRR15712139 GSM5556100 SRA1288417 SRX12007846 Bisulfite-Seq PAIRED SRP335531 PRJNA760352 183355 5 Ben Szaro Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System Characterized by Whole Genome Bisulfite Sequencing (WGBS) Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons t Ben Szaro, Ben Szaro, Sergei Reverdatto, Xiang Zhang, Morgan Sammons, Kurt Gibbs Whole Genome Bisulfite Sequencing (WGBS: 15XGenome coverage per sample) was performed on 21 samples (3 biological replicates; 7 tissues/conditions): operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at 11 days post optic nerve crush, plus surgically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at 7 days post spinal cord transection, with 5 pooled hindbrains for each sample; juvenile frog hindbrain at 7 days after spinal cord transection, plus unoperated hindbrain control, with 5 pooled hindbrains for each sample. 34979916 58796 SRP335531 SRR15712140 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15712140/SRR15712140 GSM5556101 SRA1288417 SRX12007847 Bisulfite-Seq PAIRED SRP335531 PRJNA760352 189808 1 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066704 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066704/SRR17066704.1 GSM5708062 SRA1336225 SRX13255325 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 2 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066705 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR17066705/SRR17066705 GSM5708063 SRA1336225 SRX13255326 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 3 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066706 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066706/SRR17066706.1 GSM5708064 SRA1336225 SRX13255327 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 4 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066707 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066707/SRR17066707.1 GSM5708065 SRA1336225 SRX13255328 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 5 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066708 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066708/SRR17066708.1 GSM5708066 SRA1336225 SRX13255329 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 6 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066709 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR17066709/SRR17066709 GSM5708067 SRA1336225 SRX13255330 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 7 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066710 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066710/SRR17066710.1 GSM5708068 SRA1336225 SRX13255331 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 8 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066711 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066711/SRR17066711.1 GSM5708069 SRA1336225 SRX13255332 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 9 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066712 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR17066712/SRR17066712 GSM5708070 SRA1336225 SRX13255333 RNA-Seq PAIRED SRP348439 PRJNA784575 189808 10 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066713 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066713/SRR17066713.1 GSM5708071 SRA1336225 SRX13255334 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 11 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066714 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR17066714/SRR17066714 GSM5708072 SRA1336225 SRX13255335 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 12 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066715 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR17066715/SRR17066715 GSM5708073 SRA1336225 SRX13255336 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 13 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066716 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066716/SRR17066716.1 GSM5708074 SRA1336225 SRX13255337 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 14 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066717 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066717/SRR17066717.1 GSM5708075 SRA1336225 SRX13255338 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 15 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066718 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066718/SRR17066718.1 GSM5708076 SRA1336225 SRX13255339 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 16 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066719 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR17066719/SRR17066719 GSM5708077 SRA1336225 SRX13255340 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 17 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066720 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos4/sra-pub-hup-2/SRR017/17066/SRR17066720/SRR17066720.1 GSM5708078 SRA1336225 SRX13255341 RNA-Seq SINGLE SRP348439 PRJNA784575 189808 18 Juan Tena Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation Juan Tena, Martin Franke, Alberto Pérez-Posada, Che-Yi Lin, Cindy Chou, Yi-Hsien Su, Jr-Kai Yu RNA-seq and ATAC-seq for different treatments that stimulate/inhibits signaling pathways in zebrafish, xenopus tropicalis, amphioxus and ptychodera flava during embryonic development This submission corresponds to RNA-seq component of Ptychodera flava and Xenopus tropicalis data. 35263228 60214 SRP348439 SRR17066721 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR17066721/SRR17066721 GSM5708079 SRA1336225 SRX13255342 RNA-Seq SINGLE SRP348439 PRJNA784575