GSE_ID CONTACTPERSON SERIESTITLE SUMMARY CONTRIBUTORS EXPDESIGN PUBMEDID PAPER_ID SRA_STUDY_NUM TRACKNAME ASSAY STAGE TISSUE PUBLICATION GSM CAT_HIERARCHY STRAIN SPECIES_VERSION EXT_SPECIES_VERSION STATUS_LIST GSE_ROOT_FOLDER GSE_SPECIES_VER_ROOT_FOLDER GSE_BW_ROOT_FOLDER GSE_TPM_ROOT_FOLDER GSE_DE_ROOT_FOLDER GSE_PEAK_ROOT_FOLDER GSE_README_FILE 14025 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropical 19758566 40368 SRP001343 WE - NF10-13 RNA-Seq NF10 embryo Akkers RC et al. (2009) GSM352204 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/Readme.txt 14025 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropical 19758566 40368 SRP001343 H3K27me3 WE - NF11-12 ChIP-Seq NF11 embryo Akkers RC et al. (2009) GSM352203 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Readme.txt 14025 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropical 19758566 40368 SRP001343 H3K4me3 WE - NF11-12 ChIP-Seq NF11 embryo Akkers RC et al. (2009) GSM352202 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Readme.txt 14025 Gert Jan Veenstra A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropical 19758566 40368 SRP001343 Pol II WE - NF11-12 ChIP-Seq NF11 embryo Akkers RC et al. (2009) GSM419463 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Readme.txt 14952 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 skin - adult RNA-Seq adult skin Armisen J et al. (2009) GSM372601 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt 14952 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 oocyte - oocyte III-IV RNA-Seq oocyte III oocyte Armisen J et al. (2009) GSM372603 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt 14952 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 oocyte - oocyte I-II RNA-Seq oocyte I oocyte Armisen J et al. (2009) GSM372602 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt 14952 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 oocyte - oocyte V-VI RNA-Seq oocyte V oocyte Armisen J et al. (2009) GSM372604 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt 14952 Mike Gilchrist High-throughput sequencing of small RNAs from Xenopus tropicalis High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt Mike Gilchrist Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI 19628731 40115 SRP001036 liver - adult RNA-Seq adult liver Armisen J et al. (2009) GSM372598 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt 15556 Nelson Lau Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Variou Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower Small RNAs were ligated with linkers and converted to cDNA by reverse transcription. cDNA library was amplified by PCR and was sequenced with either 19713941 40411 ooplasm - mature egg RNA-Seq mature egg ooplasm Lau NC et al. (2009) GSM389474 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Readme.txt 15556 Nelson Lau Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Variou Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower Small RNAs were ligated with linkers and converted to cDNA by reverse transcription. cDNA library was amplified by PCR and was sequenced with either 19713941 40411 microtubule - mature egg RNA-Seq mature egg egg Lau NC et al. (2009) GSM389464 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt 15556 Nelson Lau Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Variou Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower Small RNAs were ligated with linkers and converted to cDNA by reverse transcription. cDNA library was amplified by PCR and was sequenced with either 19713941 40411 egg - mature egg RNA-Seq mature egg egg Lau NC et al. (2009) GSM389477,GSM389478,GSM389479,GSM389480,GSM389481 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt 15556 Nelson Lau Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Variou Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower Small RNAs were ligated with linkers and converted to cDNA by reverse transcription. cDNA library was amplified by PCR and was sequenced with either 19713941 40411 piwil1 ooplasm - mature egg RNA-Seq mature egg ooplasm Lau NC et al. (2009) GSM389473 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt 15556 Nelson Lau Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Variou Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower Small RNAs were ligated with linkers and converted to cDNA by reverse transcription. cDNA library was amplified by PCR and was sequenced with either 19713941 40411 microtubule - mature egg RNA-Seq mature egg egg Lau NC et al. (2009) GSM389476 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Readme.txt 15556 Nelson Lau Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Variou Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower Small RNAs were ligated with linkers and converted to cDNA by reverse transcription. cDNA library was amplified by PCR and was sequenced with either 19713941 40411 ooplasm - mature egg RNA-Seq mature egg ooplasm Lau NC et al. (2009) GSM389472 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt 15556 Nelson Lau Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Variou Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower Small RNAs were ligated with linkers and converted to cDNA by reverse transcription. cDNA library was amplified by PCR and was sequenced with either 19713941 40411 piwil1 ooplasm - mature egg RNA-Seq mature egg ooplasm Lau NC et al. (2009) GSM389475 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Readme.txt 19173 Nicolas Robine Xenopus egg small RNA associated with Y12 antibody We examined in Xenopus tropicalis eggs piRNAs that are associated with Y12 antibody, which binds symmetrically methylated arginines that are present o Nicolas Robine, Nelson Lau, Eric Lai Sequencing of a cDNA library from small RNAs from the Y12 immunoprecipitate 20022248 40809 SRP001702 SNRPB egg - mature egg RNA-Seq mature egg egg Robine N et al. (2009) GSM475282 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/Readme.txt 21482 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 WE - NF10-12 RNA-Seq NF10 embryo van Heeringen SJ et al. (2011) GSM632116 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Readme.txt 21482 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 TBP WE - NF12 ChIP-Seq NF12 embryo van Heeringen SJ et al. (2011) GSM537039 ChIP-Seq/Transcription Factor/TBP tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/Readme.txt 21482 Gert Jan Veenstra Nucleotide composition-linked divergence of vertebrate core promoter architecture Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos 21284373 42761 SRP002372 WE - unfertilized egg RNA-Seq egg embryo van Heeringen SJ et al. (2011) GSM632117 RNA-Seq/Whole Embryo/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Readme.txt 22146 Kevin Lebrigand microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand 2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated) and 26 (ciliated) of Xenopus laevis development 21602795 43315 SRP002578 WE - NF26 RNA-Seq NF26 embryo Marcet B et al. (2011) GSM550781,GSM550782 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Readme.txt 22146 Kevin Lebrigand microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand 2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated) and 26 (ciliated) of Xenopus laevis development 21602795 43315 SRP002578 WE - NF11-11.5 RNA-Seq NF11 embryo Marcet B et al. (2011) GSM550779,GSM550780 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Readme.txt 23913 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gast 21636662 43338 SRP003559 WE - NF12.5 MBD-Seq NF12.5 embryo Bogdanovic O et al. (2011) GSM589699 MBD-Seq/Epigenetic/ tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt 23913 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gast 21636662 43338 SRP003559 WE - NF12.5 MBD-Seq NF12.5 embryo Bogdanovic O et al. (2011) GSM589697 MBD-Seq/Epigenetic/ tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt 23913 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gast 21636662 43338 SRP003559 WE - NF9 MBD-Seq NF9 embryo Bogdanovic O et al. (2011) GSM589696 MBD-Seq/Epigenetic/ tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt 23913 Ozren Bogdanovic Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gast 21636662 43338 SRP003559 WE - NF9 MBD-Seq NF9 embryo Bogdanovic O et al. (2011) GSM589698 MBD-Seq/Epigenetic/ tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt 30067 Juan Larrain Deep sequencing of small RNAs in the Xenopus tropicalis gastrula Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo Analysis of small RNAs expressed in the Xenopus tropicalis gastrula. 21818339 43632 SRP007217 ventral WE - NF10 RNA-Seq NF10 embryo Faunes F et al. (2011) GSM744254 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Readme.txt 30067 Juan Larrain Deep sequencing of small RNAs in the Xenopus tropicalis gastrula Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo Analysis of small RNAs expressed in the Xenopus tropicalis gastrula. 21818339 43632 SRP007217 dorsal WE - NF10 RNA-Seq NF10 dorsal Faunes F et al. (2011) GSM744253 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Readme.txt 30146 Se-Jin Yoon HEB and E2A function as SMAD/FOXH1 cofactors Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo. 21828274 43683 SRP007355 input WE - NF10.5 ChIP-Seq NF10.5 embryo Yoon SJ et al. (2011) GSM746612 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Readme.txt 30146 Se-Jin Yoon HEB and E2A function as SMAD/FOXH1 cofactors Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo. 21828274 43683 SRP007355 Smad2/3 WE - NF10.5 ChIP-Seq NF10.5 embryo Yoon SJ et al. (2011) GSM746611 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Readme.txt 33444 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 retina - NF24 RNA-Seq NF24 retina Baudet ML et al. (2011) GSM827025,GSM827026,GSM827027 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Readme.txt 33444 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 retina - NF32 RNA-Seq NF32 retina Baudet ML et al. (2011) GSM827028,GSM827029,GSM827030 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Readme.txt 33444 Cei Abreu-Goodger miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage. 22138647 44540 SRP009183 retina - NF40 RNA-Seq NF40 retina Baudet ML et al. (2011) GSM827031,GSM827032,GSM827033 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF31-32 RNA-Seq NF31 embryo Tan MH et al. (2013) GSM919934,GSM919956 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF5 RNA-Seq NF5 embryo Tan MH et al. (2013) GSM919941 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF44-45 RNA-Seq NF44 embryo Tan MH et al. (2013) GSM919961 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF40 RNA-Seq NF40 embryo Tan MH et al. (2013) GSM919936,GSM919959 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF19 RNA-Seq NF19 embryo Tan MH et al. (2013) GSM919928,GSM919929,GSM919950 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF22-23 RNA-Seq NF22 embryo Tan MH et al. (2013) GSM919931,GSM919952 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF37/38-39 RNA-Seq NF37/38 embryo Tan MH et al. (2013) GSM919958 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF10 RNA-Seq NF10 embryo Tan MH et al. (2013) GSM919923,GSM919945 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF9 RNA-Seq NF9 embryo Tan MH et al. (2013) GSM919922,GSM919944 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF11-12 RNA-Seq NF11 embryo Tan MH et al. (2013) GSM919924,GSM919925,GSM919946 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF2 RNA-Seq NF2 embryo Tan MH et al. (2013) GSM919938 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF13-14 RNA-Seq NF13 embryo Tan MH et al. (2013) GSM919947,GSM919948 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF20-21 RNA-Seq NF20 embryo Tan MH et al. (2013) GSM919930,GSM919951 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF16-18 RNA-Seq NF16 embryo Tan MH et al. (2013) GSM919927,GSM919949 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF41-42 RNA-Seq NF41 embryo Tan MH et al. (2013) GSM919937,GSM919960 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF4 RNA-Seq NF4 embryo Tan MH et al. (2013) GSM919940 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF6 RNA-Seq NF6 embryo Tan MH et al. (2013) GSM919942 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF3 RNA-Seq NF3 embryo Tan MH et al. (2013) GSM919939 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF28 RNA-Seq NF28 embryo Tan MH et al. (2013) GSM919933,GSM919955 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF24-26 RNA-Seq NF24 embryo Tan MH et al. (2013) GSM919932,GSM919953,GSM919954 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF15 RNA-Seq NF15 embryo Tan MH et al. (2013) GSM919926 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF8 RNA-Seq NF8 embryo Tan MH et al. (2013) GSM919943 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 37452 Kin Fai Au RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole 22960373 45933 SRP012375 WE - NF33/34 RNA-Seq NF33/34 embryo Tan MH et al. (2013) GSM919935,GSM919957 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 WE - NF10 small RNA RNA-Seq NF10 embryo Harding JL et al. (2014) GSM945998 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 WE - NF8 RNA-Seq NF8 embryo Harding JL et al. (2014) GSM946002 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 WE - NF8 small RNA RNA-Seq NF8 embryo Harding JL et al. (2014) GSM945997 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 WE - NF18 small RNA RNA-Seq NF18 embryo Harding JL et al. (2014) GSM945999 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 vegetal pole - NF10 RNA-Seq NF10 vegetal pole Harding JL et al. (2014) GSM946001 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 animal pole - NF10 RNA-Seq NF10 animal pole Harding JL et al. (2014) GSM946000 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 WE - NF18 RNA-Seq NF18 embryo Harding JL et al. (2014) GSM946004 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 38605 Caroline Hill Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development. 24065776 47876 SRP013627 WE - NF10 RNA-Seq NF10 embryo Harding JL et al. (2014) GSM946003 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K27me3 WE - NF12 ChIP-Seq NF12 embryo van Heeringen SJ et al. (2014) GSM1009594 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 Jarid2 WE - NF9 ChIP-Seq NF9 embryo van Heeringen SJ et al. (2014) GSM1009602 ChIP-Seq/Transcription Factor/Jarid2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K4me3 WE - NF12 ChIP-Seq NF12 embryo van Heeringen SJ et al. (2014) GSM1009590 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 Pol II WE - NF12 ChIP-Seq NF12 embryo van Heeringen SJ et al. (2014) GSM1009598 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K4me3 WE - NF16 ChIP-Seq NF16 embryo van Heeringen SJ et al. (2014) GSM1009591 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 input WE - NF29/30 ChIP-Seq NF29/30 embryo van Heeringen SJ et al. (2014) GSM1009604 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K27me3 WE - NF16 ChIP-Seq NF16 embryo van Heeringen SJ et al. (2014) GSM1009595 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K4me3 WE - NF9 ChIP-Seq NF9 embryo van Heeringen SJ et al. (2014) GSM1009589 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 Ezh2 WE - NF9 ChIP-Seq NF9 embryo van Heeringen SJ et al. (2014) GSM1009601 ChIP-Seq/Transcription Factor/Ezh2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 Pol II WE - NF9 ChIP-Seq NF9 embryo van Heeringen SJ et al. (2014) GSM1009597 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K4me1 WE - NF9 ChIP-Seq NF9 embryo van Heeringen SJ et al. (2014) GSM1009603 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 Pol II WE - NF16 ChIP-Seq NF16 embryo van Heeringen SJ et al. (2014) GSM1009599 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K27me3 WE - NF9 ChIP-Seq NF9 embryo van Heeringen SJ et al. (2014) GSM1009593 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 Pol II WE - NF29/30 ChIP-Seq NF29/30 embryo van Heeringen SJ et al. (2014) GSM1009600 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K27me3 WE - NF29/30 ChIP-Seq NF29/30 embryo van Heeringen SJ et al. (2014) GSM1009596 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41161 Gert Jan Veenstra Principles of nucleation of H3K27 methylation during embryonic development During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3 Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos 24336765 47807 SRP015902 H3K4me3 WE - NF29/30 ChIP-Seq NF29/30 embryo van Heeringen SJ et al. (2014) GSM1009592 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt 41338 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfis 23258890 46474 SRP015997 kidney - adult RNA-Seq adult kidney Barbosa-Morais NL et al. (2012) GSM1015167 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt 41338 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfis 23258890 46474 SRP015997 liver - adult RNA-Seq adult liver Barbosa-Morais NL et al. (2012) GSM1015166 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt 41338 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfis 23258890 46474 SRP015997 skeletal muscle - adult RNA-Seq adult skeletal muscle Barbosa-Morais NL et al. (2012) GSM1015169 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt 41338 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfis 23258890 46474 SRP015997 heart - adult RNA-Seq adult heart Barbosa-Morais NL et al. (2012) GSM1015168 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt 41338 Nuno Barbosa-Morais The evolutionary landscape of alternative splicing in vertebrate species How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfis 23258890 46474 SRP015997 brain - adult RNA-Seq adult brain Barbosa-Morais NL et al. (2012) GSM1015165 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt 43512 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebr 23467541 46753 SRP017952 WE - NF11-12 Bio-CAP-Seq NF11 embryo Long HK et al. (2013) GSM1064693 Bio-CAP-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt 43512 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebr 23467541 46753 SRP017952 input testis - adult Bio-CAP-Seq adult testis Long HK et al. (2013) GSM1064690 Bio-CAP-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt 43512 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebr 23467541 46753 SRP017952 testis - adult Bio-CAP-Seq adult testis Long HK et al. (2013) GSM1064691 Bio-CAP-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt 43512 David Sims Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive David Sims, Hannah Long, Chris Ponting, Robert Klose Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebr 23467541 46753 SRP017952 liver - adult Bio-CAP-Seq adult liver Long HK et al. (2013) GSM1064692 Bio-CAP-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 ovary - adult RNA-Seq adult ovary Necsulea A et al. (2014) GSM1064865,GSM1196056 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 liver (male) - adult RNA-Seq adult liver Necsulea A et al. (2014) GSM1064862 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 testis - adult RNA-Seq adult testis Necsulea A et al. (2014) GSM1064864,GSM1196057 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 heart (female) - adult RNA-Seq adult female organism Necsulea A et al. (2014) GSM1064859 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 liver (female) - adult RNA-Seq adult female organism Necsulea A et al. (2014) GSM1064863 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 brain (female) - adult RNA-Seq adult brain Necsulea A et al. (2014) GSM1064857 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 kidney (female) - adult RNA-Seq adult female organism Necsulea A et al. (2014) GSM1064861 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 heart (male) - adult RNA-Seq adult heart Necsulea A et al. (2014) GSM1064858 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 brain (male) - adult RNA-Seq adult brain Necsulea A et al. (2014) GSM1064856 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43520 Anamaria Necsulea The evolution of lncRNA repertoires and expression patterns in tetrapods Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors [Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous 24463510 54076 SRP017959 kidney (male) - adult RNA-Seq adult kidney Necsulea A et al. (2014) GSM1064860 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 WE - NF9 RNA-Seq NF9 embryo Paranjpe SS et al. (2013) GSM1067625 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 WE - NF29/30 RNA-Seq NF29/30 embryo Paranjpe SS et al. (2013) GSM1067628 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 oocyte - unfertilized egg rd RNA-Seq egg oocyte Paranjpe SS et al. (2013) GSM1067629 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 oocyte - unfertilized egg RNA-Seq egg oocyte Paranjpe SS et al. (2013) GSM1067623 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 WE - NF6 rd RNA-Seq NF6 embryo Paranjpe SS et al. (2013) GSM1067630 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 WE - NF16 RNA-Seq NF16 embryo Paranjpe SS et al. (2013) GSM1067627 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 WE - NF12 RNA-Seq NF12 embryo Paranjpe SS et al. (2013) GSM1067626 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 WE - NF6 RNA-Seq NF6 embryo Paranjpe SS et al. (2013) GSM1067624 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 43652 Gert Jan Veenstra A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development 24195446 47572 SRP018091 WE - NF9 rd RNA-Seq NF9 embryo Paranjpe SS et al. (2013) GSM1067631 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt 45786 Panna Tandon Cardiac transcriptome of Tcf21-depleted Xenopus embryos The aim of the approach was to use RNAseq analysis to identify genes expressed in Xenopus epicardium that were affected by embryonic depletion of the Panna Tandon, Frank Conlon, Nirav Amin mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GA 23637334 47035 SRP020536 heart + tcf21 MO - NF44-45 RNA-Seq NF44 heart Tandon P et al. (2013) GSM1115089 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt 45786 Panna Tandon Cardiac transcriptome of Tcf21-depleted Xenopus embryos The aim of the approach was to use RNAseq analysis to identify genes expressed in Xenopus epicardium that were affected by embryonic depletion of the Panna Tandon, Frank Conlon, Nirav Amin mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GA 23637334 47035 SRP020536 heart + tcf21 MO - NF44-45 RNA-Seq NF44 heart Tandon P et al. (2013) GSM1115089 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt 45786 Panna Tandon Cardiac transcriptome of Tcf21-depleted Xenopus embryos The aim of the approach was to use RNAseq analysis to identify genes expressed in Xenopus epicardium that were affected by embryonic depletion of the Panna Tandon, Frank Conlon, Nirav Amin mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GA 23637334 47035 SRP020536 heart + tcf21 control MO - NF44-45 RNA-Seq NF44 heart Tandon P et al. (2013) GSM1115088 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt 45786 Panna Tandon Cardiac transcriptome of Tcf21-depleted Xenopus embryos The aim of the approach was to use RNAseq analysis to identify genes expressed in Xenopus epicardium that were affected by embryonic depletion of the Panna Tandon, Frank Conlon, Nirav Amin mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GA 23637334 47035 SRP020536 heart + tcf21 control MO - NF44-45 RNA-Seq NF44 heart Tandon P et al. (2013) GSM1115088 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 Xbra WE - NF12.5 ChIP-Seq NF12.5 embryo Gentsch GE et al. (2013) GSM1180932,GSM1180938 ChIP-Seq/Transcription Factor/Xbra tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 input WE - NF20 ChIP-Seq NF20 embryo Gentsch GE et al. (2013) GSM1180941 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 Xbra WE - NF20 ChIP-Seq NF20 embryo Gentsch GE et al. (2013) GSM1180940 ChIP-Seq/Transcription Factor/Xbra tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 input WE - NF12.5 (vegt) ChIP-Seq NF12.5 embryo Gentsch GE et al. (2013) GSM1180937 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 input WE - NF12.5 ChIP-Seq NF12.5 embryo Gentsch GE et al. (2013) GSM1180933,GSM1180939 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 input WE - NF12.5 (xeomes) ChIP-Seq NF12.5 embryo Gentsch GE et al. (2013) GSM1180935 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 vegt WE - NF12.5 ChIP-Seq NF12.5 embryo Gentsch GE et al. (2013) GSM1180936 ChIP-Seq/Transcription Factor/vegt tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48560 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode George Gentsch, George Gentsch, James Smith Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq) 24055059 47416 SRP026570 Eomes WE - NF12.5 ChIP-Seq NF12.5 embryo Gentsch GE et al. (2013) GSM1180934 ChIP-Seq/Transcription Factor/Eomes tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt 48663 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 WE - NF20 RNA-Seq NF20 embryo Gentsch GE et al. (2013) GSM1183062 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt 48663 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 WE + tbxt.2 MO + tbxt MO - NF32 RNA-Seq NF32 embryo Gentsch GE et al. (2013) GSM1183056,GSM1183057,GSM1183058 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt 48663 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 WE + tbxt.2 MO + tbxt MO - NF32 RNA-Seq NF32 embryo Gentsch GE et al. (2013) GSM1183056,GSM1183057,GSM1183058 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt 48663 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 WE + hbg1 MO - NF32 RNA-Seq NF32 embryo Gentsch GE et al. (2013) GSM1183059,GSM1183060,GSM1183061 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt 48663 George Gentsch In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript George Gentsch, George Gentsch, James Smith Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates. 24055059 47416 SRP026685 WE + hbg1 MO - NF32 RNA-Seq NF32 embryo Gentsch GE et al. (2013) GSM1183059,GSM1183060,GSM1183061 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt 50593 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only exp 24424412 51735 SRP029582 input WE - NF20 ChIP-Seq NF20 embryo Chung MI et al. (2014) GSM1224377 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Readme.txt 50593 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only exp 24424412 51735 SRP029582 animal cap + rfx2 MO - NF20 RNA-Seq NF20 animal cap Chung MI et al. (2014) GSM1224374,GSM1224375 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Readme.txt 50593 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only exp 24424412 51735 SRP029582 animal cap + rfx2 MO - NF20 RNA-Seq NF20 animal cap Chung MI et al. (2014) GSM1224374,GSM1224375 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Readme.txt 50593 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only exp 24424412 51735 SRP029582 rfx2 WE - NF20 ChIP-Seq NF20 embryo Chung MI et al. (2014) GSM1224376 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Readme.txt 50593 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only exp 24424412 51735 SRP029582 rfx2 WE - NF20 ChIP-Seq NF20 embryo Chung MI et al. (2014) GSM1224376 ChIP-Seq/Transcription Factor/Rfx2 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Readme.txt 50593 Taejoon Kwon Coordinated genomic control of ciliogenesis and cell movement by Rfx2 We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only exp 24424412 51735 SRP029582 animal cap - NF20 RNA-Seq NF20 animal cap Chung MI et al. (2014) GSM1224372,GSM1224373 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF9 RNA-Seq NF9 embryo Subtelny AO et al. (2014) GSM1276565 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF3-4 (Ribo-Seq) RNA-Seq NF3 embryo Subtelny AO et al. (2014) GSM1276564 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF3-4 RNA-Seq NF3 embryo Subtelny AO et al. (2014) GSM1276563 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF12-12.5 RNA-Seq NF12 embryo Subtelny AO et al. (2014) GSM1316825 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF9 (PAL-Seq) RNA-Seq NF9 embryo Subtelny AO et al. (2014) GSM1316824 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF12-12.5 (PAL-Seq) RNA-Seq NF12 embryo Subtelny AO et al. (2014) GSM1316827 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF9 (Ribo-Seq) RNA-Seq NF9 embryo Subtelny AO et al. (2014) GSM1276566 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF12-12.5 (Ribo-Seq) RNA-Seq NF12 embryo Subtelny AO et al. (2014) GSM1316826 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 52809 Stephen Eichhorn Poly(A)-tail profiling reveals an embryonic switch in translational control Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel 64 samples from a variety of species 24476825 48919 SRP033369 WE - NF3-4 (PAL-Seq) RNA-Seq NF3 embryo Subtelny AO et al. (2014) GSM1316823 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt 53652 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 Foxh1 WE - NF10.5 ChIP-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298090,GSM1298091 ChIP-Seq/Transcription Factor/Foxh1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Readme.txt 53652 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 input WE - NF10.5 ChIP-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298094 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Readme.txt 53652 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a William Chiu, William Chiu, Ken Cho Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach. 25359723 49634 SRP034730 Smad2/3 WE - NF10.5 ChIP-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298092,GSM1298093 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Readme.txt 53653 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 WE + foxh1 MO - NF10.5 RNA-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298098 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt 53653 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 WE + foxh1 MO - NF10.5 RNA-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298098 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt 53653 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 WE + SB431542 - NF10.5 RNA-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298096 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt 53653 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 WE + SB431542 - NF10.5 RNA-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298096 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt 53653 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 WE + EtOH - NF10.5 RNA-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298095 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt 53653 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 WE + EtOH - NF10.5 RNA-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298095 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt 53653 William Chiu Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol William Chiu, William Chiu, Ken Cho Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq 25359723 49634 SRP034731 WE - NF10.5 RNA-Seq NF10.5 embryo Chiu WT et al. (2014) GSM1298097 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 Smad2/3 WE - NF10.5 ChIP-Seq NF10.5 embryo Gupta R et al. (2014) GSM1350507 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27ac WE + SB431542 - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350520 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27ac WE + SB431542 - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350520 ChIP-Seq/Epigenetic/H3K27ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 WE - NF8 RNA-Seq NF8 embryo Gupta R et al. (2014) GSM1350522 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 input WE - NF10.5 ChIP-Seq NF10.5 embryo Gupta R et al. (2014) GSM1350504 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me1 WE - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350512 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Gupta R et al. (2014) GSM1350510 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me1 WE + SB431542 - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350521 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me1 WE + SB431542 - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350521 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27me2me3 WE - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350518 ChIP-Seq/Epigenetic/H3K27me2me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27ac WE - NF8 ChIP-Seq NF8 embryo Gupta R et al. (2014) GSM1350514 ChIP-Seq/Epigenetic/H3K27ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me3 WE - NF8 ChIP-Seq NF8 embryo Gupta R et al. (2014) GSM1350508 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 input WE - NF8 ChIP-Seq NF8 embryo Gupta R et al. (2014) GSM1350502 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me1 WE - NF10.5 ChIP-Seq NF10.5 embryo Gupta R et al. (2014) GSM1350513 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27me2me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Gupta R et al. (2014) GSM1350519 ChIP-Seq/Epigenetic/H3K27me2me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me1 WE - NF8 ChIP-Seq NF8 embryo Gupta R et al. (2014) GSM1350511 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 Smad2/3 WE - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350506 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 input WE - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350503 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27ac WE - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350515 ChIP-Seq/Epigenetic/H3K27ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 Smad2/3 WE - NF8 ChIP-Seq NF8 embryo Gupta R et al. (2014) GSM1350505 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 WE + SB431542 - NF9 RNA-Seq NF9 embryo Gupta R et al. (2014) GSM1350525 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 WE + SB431542 - NF9 RNA-Seq NF9 embryo Gupta R et al. (2014) GSM1350525 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27ac WE - NF10.5 ChIP-Seq NF10.5 embryo Gupta R et al. (2014) GSM1350516 ChIP-Seq/Epigenetic/H3K27ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K4me3 WE - NF9 ChIP-Seq NF9 embryo Gupta R et al. (2014) GSM1350509 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 WE - NF9 RNA-Seq NF9 embryo Gupta R et al. (2014) GSM1350523 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 H3K27me2me3 WE - NF8 ChIP-Seq NF8 embryo Gupta R et al. (2014) GSM1350517 ChIP-Seq/Epigenetic/H3K27me2me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt 56000 Julie Baker Enhancer chromatin signatures predict Smad2/3 binding in Xenopus In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic Julie Baker, Rakhi Gupta We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and 25205067 49423 SRP040298 WE - NF10.5 RNA-Seq NF10.5 embryo Gupta R et al. (2014) GSM1350524 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt 56169 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for cont 25669884 50519 SRP040548 WE + tcf3 MO - NF10.5 RNA-Seq NF10.5 embryo Wills AE et al. (2015) GSM1357041,GSM1357042 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Readme.txt 56169 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for cont 25669884 50519 SRP040548 WE + tcf3 MO - NF10.5 RNA-Seq NF10.5 embryo Wills AE et al. (2015) GSM1357041,GSM1357042 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Readme.txt 56169 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for cont 25669884 50519 SRP040548 Smad2/3 WE + tcf3 MO - NF10.5 ChIP-Seq NF10.5 embryo Wills AE et al. (2015) GSM1357034,GSM1357035,GSM1357036 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt 56169 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for cont 25669884 50519 SRP040548 Smad2/3 WE + tcf3 MO - NF10.5 ChIP-Seq NF10.5 embryo Wills AE et al. (2015) GSM1357034,GSM1357035,GSM1357036 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt 56169 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for cont 25669884 50519 SRP040548 WE - NF10.5 RNA-Seq NF10.5 embryo Wills AE et al. (2015) GSM1357039,GSM1357040 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Readme.txt 56169 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for cont 25669884 50519 SRP040548 input WE - NF10.5 ChIP-Seq NF10.5 embryo Wills AE et al. (2015) GSM1357037,GSM1357038 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt 56169 Andrea Wills E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription Andrea Wills, Andrea Wills, Julie Baker For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for cont 25669884 50519 SRP040548 Smad2/3 WE - NF10.5 ChIP-Seq NF10.5 embryo Wills AE et al. (2015) GSM1357032,GSM1357033 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF5 (2.5hpf) - Series3 RNA-Seq NF5 embryo Collart C et al. (2014) GSM1357570 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (5.5hpf) - Series2 RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357554 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (8.0hpf) - Series3 rd RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357592 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (7.0hpf) - Series3 rd RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357591 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (6.0hpf) - Series3 rd RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357590 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF2 (1.0hpf) - Series1 RNA-Seq NF2 embryo Collart C et al. (2014) GSM1357543 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (8.0hpf) - Series3 RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357581 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF1 (0.0hpf) - Series3 rd RNA-Seq NF1 zygote Collart C et al. (2014) GSM1357584 RNA-Seq/Embryonic Tissues/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF11.5 (9.5hpf) - Series2 RNA-Seq NF11.5 embryo Collart C et al. (2014) GSM1357562 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (7.5hpf) - Series3 RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357580 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF6 (3.0hpf) - Series3 rd RNA-Seq NF6 embryo Collart C et al. (2014) GSM1357587 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (7.0hpf) - Series3 RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357579 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF11 (9.0hpf) - Series2 RNA-Seq NF11 embryo Collart C et al. (2014) GSM1357561 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (5.0hpf) - Series3 RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357575 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (4.5hpf) - Series2 RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357552,GSM1357563 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF10 (9.0hpf) - Series3 RNA-Seq NF10 embryo Collart C et al. (2014) GSM1357583 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF3 (1.5hpf) - Series1 RNA-Seq NF3 embryo Collart C et al. (2014) GSM1357544 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (5.0hpf) - Series2 RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357553 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF7 (4.0hpf) - Series3 RNA-Seq NF7 embryo Collart C et al. (2014) GSM1357573 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF1 (0.5hpf) - Series1 RNA-Seq NF1 embryo Collart C et al. (2014) GSM1357542 RNA-Seq/Whole Embryo/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (5.0hpf) - Series3 rd RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357589 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (5.5hpf) - Series3 RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357576 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF1 (0.0hpf) - Series3 RNA-Seq NF1 zygote Collart C et al. (2014) GSM1357565 RNA-Seq/Embryonic Tissues/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF2 (1.0hpf) - Series3 RNA-Seq NF2 embryo Collart C et al. (2014) GSM1357567 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF10.25 (7.5hpf) - Series2 RNA-Seq NF10.25 embryo Collart C et al. (2014) GSM1357558 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (6.5hpf) - Series3 RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357578 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF10.5 (8.0hpf) - Series2 RNA-Seq NF10.5 embryo Collart C et al. (2014) GSM1357559 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF7 (4.5hpf) - Series3 RNA-Seq NF7 embryo Collart C et al. (2014) GSM1357574 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (6.0hpf) - Series2 RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357555 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF1 (0.5hpf) - Series3 RNA-Seq NF1 embryo Collart C et al. (2014) GSM1357566 RNA-Seq/Whole Embryo/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF7 (3.0hpf) - Series1 RNA-Seq NF7 embryo Collart C et al. (2014) GSM1357547 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF6 (2.5hpf) - Series2 RNA-Seq NF6 embryo Collart C et al. (2014) GSM1357548 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (8.5hpf) - Series3 RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357582 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF7 (3.0hpf) - Series2 RNA-Seq NF7 embryo Collart C et al. (2014) GSM1357549 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF2 (1.5hpf) - Series3 RNA-Seq NF2 embryo Collart C et al. (2014) GSM1357568 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF6 (2.5hpf) - Series1 RNA-Seq NF6 embryo Collart C et al. (2014) GSM1357546 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF6 (3.0hpf) - Series3 RNA-Seq NF6 embryo Collart C et al. (2014) GSM1357571 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF6 (3.5hpf) - Series3 RNA-Seq NF6 embryo Collart C et al. (2014) GSM1357572 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF1 (0.0hpf) - Series1 RNA-Seq NF1 zygote Collart C et al. (2014) GSM1357541 RNA-Seq/Embryonic Tissues/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF10.5 (8.5hpf) - Series2 RNA-Seq NF10.5 embryo Collart C et al. (2014) GSM1357560 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF9 (6.5hpf) - Series2 RNA-Seq NF9 embryo Collart C et al. (2014) GSM1357556,GSM1357564 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF7 (3.5hpf) - Series2 RNA-Seq NF7 embryo Collart C et al. (2014) GSM1357550 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF7 (4.0hpf) - Series3 rd RNA-Seq NF7 embryo Collart C et al. (2014) GSM1357588 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF4 (2.0hpf) - Series3 rd RNA-Seq NF4 embryo Collart C et al. (2014) GSM1357586 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF4 (2.0hpf) - Series3 RNA-Seq NF4 embryo Collart C et al. (2014) GSM1357569 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (4.0hpf) - Series2 RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357551 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF5 (2.0hpf) - Series1 RNA-Seq NF5 embryo Collart C et al. (2014) GSM1357545 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF10 (7.0hpf) - Series2 RNA-Seq NF10 embryo Collart C et al. (2014) GSM1357557 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF8 (6.0hpf) - Series3 RNA-Seq NF8 embryo Collart C et al. (2014) GSM1357577 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56242 Mike Gilchrist High-resolution analysis of gene activity during the Xenopus mid-blastula transition The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization 24757007 48872 SRP040589 WE - NF2 (1.0hpf) - Series3 rd RNA-Seq NF2 embryo Collart C et al. (2014) GSM1357585 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt 56586 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 WE - NF1 rd RNA-Seq NF1 zygote Smits AH et al. (2014) GSM1364749,GSM1364750,GSM1364751,GSM1364752,GSM1364753 RNA-Seq/Embryonic Tissues/fertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Readme.txt 56586 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 WE - NF10.5 rd technical rep RNA-Seq NF10.5 embryo Smits AH et al. (2014) GSM1430931,GSM1430932,GSM1430933 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Readme.txt 56586 Gert Jan Veenstra Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos. 25056316 49279 SRP041021 WE - NF10.5 rd RNA-Seq NF10.5 embryo Smits AH et al. (2014) GSM1430926,GSM1430927,GSM1430928,GSM1430929,GSM1430930 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Readme.txt 56680 Maria Warnefors MicroRNA editing in Xenopus tropicalis We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann Sequencing of 2 small RNA sequencing libraries 24964909 50469 SRP041076 brain - adult miRNA-Seq adult brain Warnefors M et al. (2014) GSM1366781 miRNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Readme.txt 56680 Maria Warnefors MicroRNA editing in Xenopus tropicalis We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann Sequencing of 2 small RNA sequencing libraries 24964909 50469 SRP041076 heart - adult miRNA-Seq adult heart Warnefors M et al. (2014) GSM1366782 miRNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Readme.txt 58420 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, anim 26337391 51224 SRP043147 animal oocyte - oocyte VI RNA-Seq oocyte VI animal Claußen M et al. (2015) GSM1410597,GSM1410598,GSM1410599,GSM1410600 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Readme.txt 58420 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, anim 26337391 51224 SRP043147 animal oocyte - oocyte VI RNA-Seq oocyte VI animal Claußen M et al. (2015) GSM1410605,GSM1410606 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Readme.txt 58420 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, anim 26337391 51224 SRP043147 vegetal oocyte - oocyte VI RNA-Seq oocyte VI oocyte Claußen M et al. (2015) GSM1410607,GSM1410608 RNA-Seq/Embryonic Tissues/unfertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Readme.txt 58420 Gabriela Salinas-Riester Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, anim 26337391 51224 SRP043147 vegetal oocyte - oocyte VI RNA-Seq oocyte VI oocyte Claußen M et al. (2015) GSM1410601,GSM1410602,GSM1410603,GSM1410604 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 e2f4 animal cap - NF16 ChIP-Seq NF16 animal cap Ma L et al. (2014) GSM1434789 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 e2f4 animal cap - NF16 ChIP-Seq NF16 animal cap Ma L et al. (2014) GSM1434789 ChIP-Seq/Transcription Factor/E2F4 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas - NF13 RNA-Seq NF13 animal cap Ma L et al. (2014) GSM1434771,GSM1434772,GSM1434773 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas - NF13 RNA-Seq NF13 animal cap Ma L et al. (2014) GSM1434771,GSM1434772,GSM1434773 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 e2f4 animal cap + mcidas - NF16 ChIP-Seq NF16 animal cap Ma L et al. (2014) GSM1434790 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 e2f4 animal cap + mcidas - NF16 ChIP-Seq NF16 animal cap Ma L et al. (2014) GSM1434790 ChIP-Seq/Transcription Factor/E2F4 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas - NF16 RNA-Seq NF16 animal cap Ma L et al. (2014) GSM1434777,GSM1434778,GSM1434779 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas - NF16 RNA-Seq NF16 animal cap Ma L et al. (2014) GSM1434777,GSM1434778,GSM1434779 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 input animal cap - NF16 ChIP-Seq NF16 animal cap Ma L et al. (2014) GSM1434791 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas + DNe2f4 - NF13 RNA-Seq NF13 animal cap Ma L et al. (2014) GSM1434774,GSM1434775,GSM1434776 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas + DNe2f4 - NF13 RNA-Seq NF13 animal cap Ma L et al. (2014) GSM1434774,GSM1434775,GSM1434776 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas - NF18 RNA-Seq NF18 animal cap Ma L et al. (2014) GSM1434783,GSM1434784,GSM1434785 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas - NF18 RNA-Seq NF18 animal cap Ma L et al. (2014) GSM1434783,GSM1434784,GSM1434785 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas + DNe2f4 - NF16 RNA-Seq NF16 animal cap Ma L et al. (2014) GSM1434780,GSM1434781,GSM1434782 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas + DNe2f4 - NF16 RNA-Seq NF16 animal cap Ma L et al. (2014) GSM1434780,GSM1434781,GSM1434782 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas + DNe2f4 - NF18 RNA-Seq NF18 animal cap Ma L et al. (2014) GSM1434786,GSM1434787,GSM1434788 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 animal cap + mcidas + DNe2f4 - NF18 RNA-Seq NF18 animal cap Ma L et al. (2014) GSM1434786,GSM1434787,GSM1434788 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt 59309 Ian Quigley Multicilin drives centriole biogenesis via E2f proteins Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m Ian Quigley, Lina Ma, Chris Kintner RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at m 24934224 49750 SRP044238 input animal cap + mcidas - NF16 ChIP-Seq NF16 animal cap Ma L et al. (2014) GSM1434792 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 piwil1 oocyte - adult CLIP-Seq adult oocyte Toombs JA et al. (2017) GSM1544071,GSM1544072 CLIP-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 piwil2 oocyte - adult ncRNA-Seq adult oocyte Toombs JA et al. (2017) GSM1544077 ncRNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 piwil1 oocyte - adult ncRNA-Seq adult oocyte Toombs JA et al. (2017) GSM1544076 ncRNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 piwil1 spermatid - adult CLIP-Seq adult spermatid Toombs JA et al. (2017) GSM1544073 CLIP-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 piwil2 oocyte - adult CLIP-Seq adult oocyte Toombs JA et al. (2017) GSM1544070 CLIP-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 piwil2 oocyte - adult RIP-Seq adult oocyte Toombs JA et al. (2017) GSM1544079 RIP-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 oocyte - oocyte V-VI RNA-Seq oocyte V oocyte Toombs JA et al. (2017) GSM1544075 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 piwil1 oocyte - adult RIP-Seq adult oocyte Toombs JA et al. (2017) GSM1544078 RIP-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 oocyte - oocyte III-IV RNA-Seq oocyte III oocyte Toombs JA et al. (2017) GSM1544074 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Readme.txt 63228 Nelson Lau Xenopus Piwi protein associated transcripts indicate regulation beyond transposons This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bo 28031481 52877 SRP049739 oocyte - adult RNA-Seq adult oocyte Toombs JA et al. (2017) GSM1544080 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + prdm12 - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574075,GSM1574076 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + prdm12 - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574075,GSM1574076 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 prdm12 animal cap + nog + RA - NF28 ChIP-Seq NF28 animal cap Thélie A et al. (2015) GSM1574082 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 prdm12 animal cap + nog + RA - NF28 ChIP-Seq NF28 animal cap Thélie A et al. (2015) GSM1574082 ChIP-Seq/Transcription Factor/Prdm12 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 prdm12 animal cap + nog + RA - NF28 ChIP-Seq NF28 animal cap Thélie A et al. (2015) GSM1574082 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 prdm12 animal cap - NF28 ChIP-Seq NF28 animal cap Thélie A et al. (2015) GSM1574081 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 prdm12 animal cap - NF28 ChIP-Seq NF28 animal cap Thélie A et al. (2015) GSM1574081 ChIP-Seq/Transcription Factor/Prdm12 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 input animal cap + nog + RA - NF28 ChIP-Seq NF28 animal cap Thélie A et al. (2015) GSM1574084 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 input animal cap - NF28 ChIP-Seq NF28 animal cap Thélie A et al. (2015) GSM1574083 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + prdm12-VP16 - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574077,GSM1574078 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + prdm12-VP16 - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574077,GSM1574078 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + nog - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574073,GSM1574074 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + nog - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574073,GSM1574074 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574071,GSM1574072 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + EnR-prdm12 - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574079,GSM1574080 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 64551 Ian Quigley Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin 26443638 51355 SRP051597 animal cap + EnR-prdm12 - NF28 RNA-Seq NF28 animal cap Thélie A et al. (2015) GSM1574079,GSM1574080 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF18-19 (15.5hpf) - ClutchA rd RNA-Seq NF18 embryo Owens ND et al. (2016) GSM1606296 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (11hpf) - ClutchA rd RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606286 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF11 (8hpf) - ClutchA rd RNA-Seq NF11 embryo Owens ND et al. (2016) GSM1606279 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF43 (64hpf) - ClutchA RNA-Seq NF43 embryo Owens ND et al. (2016) GSM1606262,GSM1606270 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF14 (14hpf) - ClutchA rd RNA-Seq NF14 embryo Owens ND et al. (2016) GSM1606292 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF33/34 (34hpf) - ClutchA RNA-Seq NF33/34 embryo Owens ND et al. (2016) GSM1606233 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF23 (18.5hpf) - ClutchA RNA-Seq NF23 embryo Owens ND et al. (2016) GSM1606212 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF32 (32hpf) - ClutchA RNA-Seq NF32 embryo Owens ND et al. (2016) GSM1606231 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF21 (16.5hpf) - ClutchA RNA-Seq NF21 embryo Owens ND et al. (2016) GSM1606208 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (21hpf) - ClutchA RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606217 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF42 (56hpf) - ClutchA RNA-Seq NF42 embryo Owens ND et al. (2016) GSM1606254 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF28 (27hpf) - ClutchA RNA-Seq NF28 embryo Owens ND et al. (2016) GSM1606226 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (21.5hpf) - ClutchA rd RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606309 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF39 (42hpf) - ClutchA RNA-Seq NF39 embryo Owens ND et al. (2016) GSM1606241 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF31 (30hpf) - ClutchA RNA-Seq NF31 embryo Owens ND et al. (2016) GSM1606229,GSM1606267 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (6.5hpf) - ClutchA RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606188 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF40 (48hpf) - ClutchA RNA-Seq NF40 embryo Owens ND et al. (2016) GSM1606246 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF15 (14.5hpf) - ClutchA RNA-Seq NF15 embryo Owens ND et al. (2016) GSM1606204 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF39 (44hpf) - ClutchA RNA-Seq NF39 embryo Owens ND et al. (2016) GSM1606242 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF7 (3.5hpf) - ClutchA RNA-Seq NF7 embryo Owens ND et al. (2016) GSM1606182 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF2- (1hpf) - ClutchA rd RNA-Seq NF2- embryo Owens ND et al. (2016) GSM1606284 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (11.5hpf) - ClutchA RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606198,GSM1606265 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF15 (14.5hpf) - ClutchA rd RNA-Seq NF15 embryo Owens ND et al. (2016) GSM1606293 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF22 (17.5hpf) - ClutchA RNA-Seq NF22 embryo Owens ND et al. (2016) GSM1606210 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF6 (2.5hpf) - ClutchA RNA-Seq NF6 embryo Owens ND et al. (2016) GSM1606180 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (4.5hpf) - ClutchA rd RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606318 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF40 (50hpf) - ClutchA RNA-Seq NF40 embryo Owens ND et al. (2016) GSM1606248 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF29/30 (29hpf) - ClutchA RNA-Seq NF29/30 embryo Owens ND et al. (2016) GSM1606228 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF40 (46hpf) - ClutchA RNA-Seq NF40 embryo Owens ND et al. (2016) GSM1606244 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF23 (18.5hpf) - ClutchA rd RNA-Seq NF23 embryo Owens ND et al. (2016) GSM1606302 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF8 (4hpf) - ClutchA RNA-Seq NF8 embryo Owens ND et al. (2016) GSM1606183 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (6.5hpf) - ClutchA rd RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606276 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF8 (4hpf) - ClutchA rd RNA-Seq NF8 embryo Owens ND et al. (2016) GSM1606317 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF21 (17hpf) - ClutchA RNA-Seq NF21 embryo Owens ND et al. (2016) GSM1606209 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF1 (0hpf) - ClutchA RNA-Seq NF1 embryo Owens ND et al. (2016) GSM1606175 RNA-Seq/Embryonic Tissues/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (23.5hpf) - ClutchA rd RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606313 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (10hpf) - ClutchA rd RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606283 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (20hpf) - ClutchA rd RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606305 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF14 (14hpf) - ClutchA RNA-Seq NF14 embryo Owens ND et al. (2016) GSM1606203 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF41 (53hpf) - ClutchA RNA-Seq NF41 embryo Owens ND et al. (2016) GSM1606251 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF41 (52hpf) - ClutchA RNA-Seq NF41 embryo Owens ND et al. (2016) GSM1606250,GSM1606269 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF5 (2hpf) - ClutchA RNA-Seq NF5 embryo Owens ND et al. (2016) GSM1606179 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF1 (0.5hpf) - ClutchA rd RNA-Seq NF1 embryo Owens ND et al. (2016) GSM1606273 RNA-Seq/Whole Embryo/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (9.5hpf) - ClutchA rd RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606282 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (12hpf) - ClutchA rd RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606288 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF16-17 (15hpf) - ClutchA rd RNA-Seq NF16 embryo Owens ND et al. (2016) GSM1606294 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF41 (51hpf) - ClutchA RNA-Seq NF41 embryo Owens ND et al. (2016) GSM1606249 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF6 (2.5hpf) - ClutchA rd RNA-Seq NF6 embryo Owens ND et al. (2016) GSM1606314 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (7.5hpf) - ClutchA RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606190 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF14 (13.5hpf) - ClutchA rd RNA-Seq NF14 embryo Owens ND et al. (2016) GSM1606291 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (19hpf) - ClutchA RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606213 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF27 (24hpf) - ClutchA RNA-Seq NF27 embryo Owens ND et al. (2016) GSM1606223 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF21 (16.5hpf) - ClutchA rd RNA-Seq NF21 embryo Owens ND et al. (2016) GSM1606298 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (23hpf) - ClutchA rd RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606312 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (6hpf) - ClutchA rd RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606275 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF43 (65hpf) - ClutchA RNA-Seq NF43 embryo Owens ND et al. (2016) GSM1606263 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF40 (47hpf) - ClutchA RNA-Seq NF40 embryo Owens ND et al. (2016) GSM1606245 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (8.5hpf) - ClutchA rd RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606280 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (7.5hpf) - ClutchA rd RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606278 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (10hpf) - ClutchA RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606195 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF21 (17hpf) - ClutchA rd RNA-Seq NF21 embryo Owens ND et al. (2016) GSM1606299 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (9.5hpf) - ClutchA RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606194 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (8.5hpf) - ClutchA RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606192 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF43 (63hpf) - ClutchA RNA-Seq NF43 embryo Owens ND et al. (2016) GSM1606261 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF41 (55hpf) - ClutchA RNA-Seq NF41 embryo Owens ND et al. (2016) GSM1606253 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF16-17 (15hpf) - ClutchA RNA-Seq NF16 embryo Owens ND et al. (2016) GSM1606205 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (22hpf) - ClutchA rd RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606310 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF35/36 (37hpf) - ClutchA RNA-Seq NF35/36 embryo Owens ND et al. (2016) GSM1606236 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (12.5hpf) - ClutchA RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606200 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (20.5hpf) - ClutchA RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606216 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF22 (18hpf) - ClutchA rd RNA-Seq NF22 embryo Owens ND et al. (2016) GSM1606301 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF42 (62hpf) - ClutchA RNA-Seq NF42 embryo Owens ND et al. (2016) GSM1606260 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF41 (54hpf) - ClutchA RNA-Seq NF41 embryo Owens ND et al. (2016) GSM1606252 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF2- (1hpf) - ClutchA RNA-Seq NF2- embryo Owens ND et al. (2016) GSM1606177 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (13hpf) - ClutchA rd RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606290 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF42 (58hpf) - ClutchA RNA-Seq NF42 embryo Owens ND et al. (2016) GSM1606256 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (5.5hpf) - ClutchA RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606186 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF39 (45hpf) - ClutchA RNA-Seq NF39 embryo Owens ND et al. (2016) GSM1606243 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (12hpf) - ClutchA RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606199 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF42 (57hpf) - ClutchA RNA-Seq NF42 embryo Owens ND et al. (2016) GSM1606255 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF28 (28hpf) - ClutchA RNA-Seq NF28 embryo Owens ND et al. (2016) GSM1606227 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (10.5hpf) - ClutchA rd RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606285 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF5 (2hpf) - ClutchA rd RNA-Seq NF5 embryo Owens ND et al. (2016) GSM1606306 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (21hpf) - ClutchA rd RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606308 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (11hpf) - ClutchA RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606197 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF1 (0hpf) - ClutchA rd RNA-Seq NF1 embryo Owens ND et al. (2016) GSM1606271 RNA-Seq/Embryonic Tissues/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (19.5hpf) - ClutchA rd RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606304 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF22 (17.5hpf) - ClutchA rd RNA-Seq NF22 embryo Owens ND et al. (2016) GSM1606300 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (11.5hpf) - ClutchA rd RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606287 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (5hpf) - ClutchA rd RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606272 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (21.5hpf) - ClutchA RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606218,GSM1606266 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (20hpf) - ClutchA RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606215 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (9hpf) - ClutchA rd RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606281 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF7 (3.5hpf) - ClutchA rd RNA-Seq NF7 embryo Owens ND et al. (2016) GSM1606316 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (13hpf) - ClutchA RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606201 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF37/38 (40hpf) - ClutchA RNA-Seq NF37/38 embryo Owens ND et al. (2016) GSM1606239 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (4.5hpf) - ClutchA RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606184 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF40 (49hpf) - ClutchA RNA-Seq NF40 embryo Owens ND et al. (2016) GSM1606247 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (10.5hpf) - ClutchA RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606196 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF3 (1.5hpf) - ClutchA RNA-Seq NF3 embryo Owens ND et al. (2016) GSM1606178 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF37/38 (39hpf) - ClutchA RNA-Seq NF37/38 embryo Owens ND et al. (2016) GSM1606238 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF33/34 (33hpf) - ClutchA RNA-Seq NF33/34 embryo Owens ND et al. (2016) GSM1606232,GSM1606268 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF33/34 (35hpf) - ClutchA RNA-Seq NF33/34 embryo Owens ND et al. (2016) GSM1606234 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF22 (18hpf) - ClutchA RNA-Seq NF22 embryo Owens ND et al. (2016) GSM1606211 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF20 (16hpf) - ClutchA RNA-Seq NF20 embryo Owens ND et al. (2016) GSM1606207 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF27 (25hpf) - ClutchA RNA-Seq NF27 embryo Owens ND et al. (2016) GSM1606224 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF39 (41hpf) - ClutchA RNA-Seq NF39 embryo Owens ND et al. (2016) GSM1606240 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (6hpf) - ClutchA RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606187 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF11 (8hpf) - ClutchA RNA-Seq NF11 embryo Owens ND et al. (2016) GSM1606191 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF42 (59hpf) - ClutchA RNA-Seq NF42 embryo Owens ND et al. (2016) GSM1606257 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (19.5hpf) - ClutchA RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606214 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (7hpf) - ClutchA RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606189 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF18-19 (15.5hpf) - ClutchA RNA-Seq NF18 embryo Owens ND et al. (2016) GSM1606206 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF42 (61hpf) - ClutchA RNA-Seq NF42 embryo Owens ND et al. (2016) GSM1606259 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF7 (3hpf) - ClutchA rd RNA-Seq NF7 embryo Owens ND et al. (2016) GSM1606315 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (5hpf) - ClutchA RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606185 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF32 (31hpf) - ClutchA RNA-Seq NF32 embryo Owens ND et al. (2016) GSM1606230 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF43 (66hpf) - ClutchA RNA-Seq NF43 embryo Owens ND et al. (2016) GSM1606264 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (9hpf) - ClutchA RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606193 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF7 (3hpf) - ClutchA RNA-Seq NF7 embryo Owens ND et al. (2016) GSM1606181 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF35/36 (36hpf) - ClutchA RNA-Seq NF35/36 embryo Owens ND et al. (2016) GSM1606235 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (20.5hpf) - ClutchA rd RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606307 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (19hpf) - ClutchA rd RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606303 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF1 (0.5hpf) - ClutchA RNA-Seq NF1 embryo Owens ND et al. (2016) GSM1606176 RNA-Seq/Whole Embryo/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (23hpf) - ClutchA RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606221 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF20 (16hpf) - ClutchA rd RNA-Seq NF20 embryo Owens ND et al. (2016) GSM1606297 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF37/38 (38hpf) - ClutchA RNA-Seq NF37/38 embryo Owens ND et al. (2016) GSM1606237 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (22.5hpf) - ClutchA rd RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606311 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (7hpf) - ClutchA rd RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606277 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (12.5hpf) - ClutchA rd RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606289 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (22.5hpf) - ClutchA RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606220 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (5.5hpf) - ClutchA rd RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606274 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF14 (13.5hpf) - ClutchA RNA-Seq NF14 embryo Owens ND et al. (2016) GSM1606202 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (22hpf) - ClutchA RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606219 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF27 (26hpf) - ClutchA RNA-Seq NF27 embryo Owens ND et al. (2016) GSM1606225 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF42 (60hpf) - ClutchA RNA-Seq NF42 embryo Owens ND et al. (2016) GSM1606258 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF3 (1.5hpf) - ClutchA rd RNA-Seq NF3 embryo Owens ND et al. (2016) GSM1606295 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (23.5hpf) - ClutchA RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606222 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF1 (0.5hpf) - ClutchB RNA-Seq NF1 embryo Owens ND et al. (2016) GSM1606320 RNA-Seq/Whole Embryo/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF1 (0hpf) - ClutchB RNA-Seq NF1 embryo Owens ND et al. (2016) GSM1606319 RNA-Seq/Embryonic Tissues/fertilized egg tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF3 (1.5hpf) - ClutchB RNA-Seq NF3 embryo Owens ND et al. (2016) GSM1606322 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (10.5hpf) - ClutchB RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606340 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (10hpf) - ClutchB RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606339 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (11.5hpf) - ClutchB RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606342 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12.5 (11hpf) - ClutchB RNA-Seq NF12.5 embryo Owens ND et al. (2016) GSM1606341 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (12.5hpf) - ClutchB RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606344 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (12hpf) - ClutchB RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606343 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF14 (13.5hpf) - ClutchB RNA-Seq NF14 embryo Owens ND et al. (2016) GSM1606346 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF13 (13hpf) - ClutchB RNA-Seq NF13 embryo Owens ND et al. (2016) GSM1606345 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF15 (14.5hpf) - ClutchB RNA-Seq NF15 embryo Owens ND et al. (2016) GSM1606348 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF14 (14hpf) - ClutchB RNA-Seq NF14 embryo Owens ND et al. (2016) GSM1606347 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF18-19 (15.5hpf) - ClutchB RNA-Seq NF18 embryo Owens ND et al. (2016) GSM1606350 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF16-17 (15hpf) - ClutchB RNA-Seq NF16 embryo Owens ND et al. (2016) GSM1606349 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF21 (16.5hpf) - ClutchB RNA-Seq NF21 embryo Owens ND et al. (2016) GSM1606352 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF20 (16hpf) - ClutchB RNA-Seq NF20 embryo Owens ND et al. (2016) GSM1606351 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF22 (17.5hpf) - ClutchB RNA-Seq NF22 embryo Owens ND et al. (2016) GSM1606354 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF21 (17hpf) - ClutchB RNA-Seq NF21 embryo Owens ND et al. (2016) GSM1606353 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF23 (18.5hpf) - ClutchB RNA-Seq NF23 embryo Owens ND et al. (2016) GSM1606356 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF22 (18hpf) - ClutchB RNA-Seq NF22 embryo Owens ND et al. (2016) GSM1606355 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (19.5hpf) - ClutchB RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606358 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (19hpf) - ClutchB RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606357 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF2- (1hpf) - ClutchB RNA-Seq NF2- embryo Owens ND et al. (2016) GSM1606321 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF6 (2.5hpf) - ClutchB RNA-Seq NF6 embryo Owens ND et al. (2016) GSM1606324 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (20.5hpf) - ClutchB RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606360 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF24 (20hpf) - ClutchB RNA-Seq NF24 embryo Owens ND et al. (2016) GSM1606359 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (21.5hpf) - ClutchB RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606362 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (21hpf) - ClutchB RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606361 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (22.5hpf) - ClutchB RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606364 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF25 (22hpf) - ClutchB RNA-Seq NF25 embryo Owens ND et al. (2016) GSM1606363 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (23.5hpf) - ClutchB RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606366 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF26 (23hpf) - ClutchB RNA-Seq NF26 embryo Owens ND et al. (2016) GSM1606365 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF27 (24hpf) - ClutchB RNA-Seq NF27 embryo Owens ND et al. (2016) GSM1606367 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF5 (2hpf) - ClutchB RNA-Seq NF5 embryo Owens ND et al. (2016) GSM1606323 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF7 (3.5hpf) - ClutchB RNA-Seq NF7 embryo Owens ND et al. (2016) GSM1606326 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF7 (3hpf) - ClutchB RNA-Seq NF7 embryo Owens ND et al. (2016) GSM1606325 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (4.5hpf) - ClutchB RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606328 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF8 (4hpf) - ClutchB RNA-Seq NF8 embryo Owens ND et al. (2016) GSM1606327 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (5.5hpf) - ClutchB RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606330 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (5hpf) - ClutchB RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606329 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (6.5hpf) - ClutchB RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606332 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF9 (6hpf) - ClutchB RNA-Seq NF9 embryo Owens ND et al. (2016) GSM1606331 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (9hpf) - ClutchB RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606337 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (9.5hpf) - ClutchB RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606338 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF12 (8.5hpf) - ClutchB RNA-Seq NF12 embryo Owens ND et al. (2016) GSM1606336 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (7.5hpf) - ClutchB RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606334 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF10 (7hpf) - ClutchB RNA-Seq NF10 embryo Owens ND et al. (2016) GSM1606333 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 65785 Mike Gilchrist Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing. 26774488 51804 SRP053406 WE - NF11 (8hpf) - ClutchB RNA-Seq NF11 embryo Owens ND et al. (2016) GSM1606335 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9ac WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659911 ChIP-Seq/Epigenetic/H3K9ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1974230 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659927 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K36me3 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659918 ChIP-Seq/Epigenetic/H3K36me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659907 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659902 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 WE + alpha amanitin - NF11 RNA-Seq NF11 embryo Hontelez S et al. (2015) GSM1974231 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 WE + alpha amanitin - NF11 RNA-Seq NF11 embryo Hontelez S et al. (2015) GSM1974231 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me1 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659900 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9ac WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659912 ChIP-Seq/Epigenetic/H3K9ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K36me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659916 ChIP-Seq/Epigenetic/H3K36me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me2 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659942 ChIP-Seq/Epigenetic/H3K9me2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659935,GSM1974225 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659935,GSM1974225 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659908 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me2 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659941 ChIP-Seq/Epigenetic/H3K9me2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K36me3 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659915 ChIP-Seq/Epigenetic/H3K36me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me3 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659949 ChIP-Seq/Epigenetic/H3K9me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 WE - NF11 RNA-Seq NF11 embryo Hontelez S et al. (2015) GSM1974232 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659930 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659920 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659926 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE - NF8 ChIP-Seq NF8 embryo Hontelez S et al. (2015) GSM1659901 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659904,GSM1974223 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659904,GSM1974223 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K36me3 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659917 ChIP-Seq/Epigenetic/H3K36me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659936,GSM1974226 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 WE - NF10.5 Bisulfite-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1677167 Bisulfite-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659905,GSM1974224 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me3 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659945 ChIP-Seq/Epigenetic/H3K9me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659925 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659921 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659924 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9ac WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659913 ChIP-Seq/Epigenetic/H3K9ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me2 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659940 ChIP-Seq/Epigenetic/H3K9me2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659922,GSM1974227 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659922,GSM1974227 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K36me3 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659919 ChIP-Seq/Epigenetic/H3K36me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 input WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659955 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me2 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659943 ChIP-Seq/Epigenetic/H3K9me2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me2 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659944 ChIP-Seq/Epigenetic/H3K9me2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 ep300 WE - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1659923,GSM1974228 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659906 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H4K20me3 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659954 ChIP-Seq/Epigenetic/H4K20me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H4K20me3 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659950 ChIP-Seq/Epigenetic/H4K20me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9ac WE - NF8 ChIP-Seq NF8 embryo Hontelez S et al. (2015) GSM1659909 ChIP-Seq/Epigenetic/H3K9ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659929 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 WE - NF9 Bisulfite-Seq NF9 embryo Hontelez S et al. (2015) GSM1875285 Bisulfite-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659933 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE - NF8 ChIP-Seq NF8 embryo Hontelez S et al. (2015) GSM1659932 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H4K20me3 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659952 ChIP-Seq/Epigenetic/H4K20me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me3 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659948 ChIP-Seq/Epigenetic/H3K9me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659938 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9ac WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659910 ChIP-Seq/Epigenetic/H3K9ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659934 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me1 WE - NF9 ChIP-Seq NF9 embryo Hontelez S et al. (2015) GSM1659896 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me3 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659947 ChIP-Seq/Epigenetic/H3K9me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9ac WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659914 ChIP-Seq/Epigenetic/H3K9ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659931 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659937 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1974229 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE + alpha amanitin - NF11 ChIP-Seq NF11 embryo Hontelez S et al. (2015) GSM1974229 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H4K20me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659951 ChIP-Seq/Epigenetic/H4K20me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me1 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659899 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 Pol II WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659928 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659903 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me1 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659897 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H4K20me3 WE - NF16 ChIP-Seq NF16 embryo Hontelez S et al. (2015) GSM1659953 ChIP-Seq/Epigenetic/H4K20me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K4me1 WE - NF12 ChIP-Seq NF12 embryo Hontelez S et al. (2015) GSM1659898 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K9me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Hontelez S et al. (2015) GSM1659946 ChIP-Seq/Epigenetic/H3K9me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 67974 Saartje Hontelez Embryonic transcription is controlled by maternally defined chromatin state During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi Saartje Hontelez, GertJan Veenstra We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of developme 26679111 51677 SRP057395 H3K27me3 WE - NF29/30 ChIP-Seq NF29/30 embryo Hontelez S et al. (2015) GSM1659939 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt 68087 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-s 26928226 51922 SRP057505 WE - NF29/30 Bisulfite-Seq NF29/30 embryo Bogdanović O et al. (2016) GSM1662791 Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt 68087 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-s 26928226 51922 SRP057505 WE - NF12 Bisulfite-Seq NF12 embryo Bogdanović O et al. (2016) GSM1662788 Bisulfite-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt 68087 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-s 26928226 51922 SRP057505 WE - NF9 Bisulfite-Seq NF9 embryo Bogdanović O et al. (2016) GSM1662787 Bisulfite-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt 68087 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-s 26928226 51922 SRP057505 WE - NF29/30 Bisulfite-Seq NF29/30 embryo Bogdanović O et al. (2016) GSM1662789 Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt 68087 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-s 26928226 51922 SRP057505 WE - NF43 Bisulfite-Seq NF43 embryo Bogdanović O et al. (2016) GSM1662790 Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt 68087 Ozren Bogdanovic Active DNA demethylation at enhancers during the vertebrate phylotypic period The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e Ozren Bogdanovic, Ryan Lister MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-s 26928226 51922 SRP057505 brain - adult Bisulfite-Seq adult brain Bogdanović O et al. (2016) GSM1859499 Bisulfite-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt 68972 Xiaopeng Ma The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu RNAseq of animal and vegetal blastomeres with 2 biological replicates 26013826 50741 SRP058428 vegetal blastomere - NF4 RNA-Seq NF4 vegetal blastomere Sun G et al. (2015) GSM1689109,GSM1689110 RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Readme.txt 68972 Xiaopeng Ma The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu RNAseq of animal and vegetal blastomeres with 2 biological replicates 26013826 50741 SRP058428 animal blastomere - NF4 RNA-Seq NF4 animal blastomere Sun G et al. (2015) GSM1689111,GSM1689112 RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Readme.txt 69701 Daniel Ramire-Gordillo RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance Purpose: To identify orthologous genes in Xenopus that are implicated in deafness and vestibular disorders in humans and to compare RNA-Seq and microa Daniel Ramire-Gordillo, Daniel Ramirez-Gordillo, TuShun Powers, Casilda Trujillo-Provencio, Jennifer van Velkinburgh, Faye Schilkey, Elba Serrano Inner ear RNA from X. laevis larval stages 56-58 was isolated and shipped to the National Center for Genome Resources, for Illumina-Solexa sequencing 26582541 51592 SRP059283 inner ear - NF56-58 RNA-Seq NF56 inner ear Ramírez-Gordillo D et al. (2015) GSM1707665 RNA-Seq/Embryonic Tissues/NF56 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + cdx1 MO + Cdx2 MO + Cdx4 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825049,GSM1825050,GSM1825051 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + cdx1 MO + Cdx2 MO + Cdx4 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825049,GSM1825050,GSM1825051 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + Cdx4 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825046,GSM1825047,GSM1825048 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + Cdx4 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825046,GSM1825047,GSM1825048 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + cdx1 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825040,GSM1825041,GSM1825042 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + cdx1 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825040,GSM1825041,GSM1825042 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + Cdx2 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825043,GSM1825044,GSM1825045 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + Cdx2 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825043,GSM1825044,GSM1825045 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825055,GSM1825056,GSM1825057 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + hbg1 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825052,GSM1825053,GSM1825054 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 71006 Ferdinand Marlétaz Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe Ferdinand Marlétaz, Harv Isaacs, Peter Holland Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding un 26231746 51076 SRP061238 WE + hbg1 MO - NF14 RNA-Seq NF14 embryo Marlétaz F et al. (2015) GSM1825052,GSM1825053,GSM1825054 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE + wnt8a MO + wnt8a - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867405,GSM1867409,GSM1867413 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE + wnt8a MO + wnt8a - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867405,GSM1867409,GSM1867413 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE + wnt8a MO + wnt8a - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867405,GSM1867409,GSM1867413 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 input WE - NF10.25 ChIP-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867401 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE + hbg1 MO - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867403,GSM1867407,GSM1867411 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE + hbg1 MO - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867403,GSM1867407,GSM1867411 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867402,GSM1867406,GSM1867410 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE + wnt8a MO - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867404,GSM1867408,GSM1867412 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 WE + wnt8a MO - NF10.25 RNA-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867404,GSM1867408,GSM1867412 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt 72657 Stefan Hoppler Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize Stefan Hoppler, Yukio Nakamura, Eduardo Alves For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequence 27068107 52077 SRP063109 beta Catenin WE - NF10.25 ChIP-Seq NF10.25 embryo Nakamura Y et al. (2016) GSM1867400 ChIP-Seq/Transcription Factor/beta Catenin tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 eye - adult RNA-Seq adult eye Session AM et al. (2016) GSM1893240,GSM1893254 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 intestine - adult RNA-Seq adult intestine Session AM et al. (2016) GSM1893242,GSM1893256 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 muscle - adult RNA-Seq adult muscle Session AM et al. (2016) GSM1893246,GSM1893260 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 pancreas - adult RNA-Seq adult pancreas Session AM et al. (2016) GSM1893248,GSM1893262 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 heart - adult RNA-Seq adult heart Session AM et al. (2016) GSM1893241,GSM1893255 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 testis - adult RNA-Seq adult testis Session AM et al. (2016) GSM1893252,GSM1893266 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 kidney - adult RNA-Seq adult kidney Session AM et al. (2016) GSM1893243,GSM1893257 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 lung - adult RNA-Seq adult lung Session AM et al. (2016) GSM1893245,GSM1893259 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 ovary - adult RNA-Seq adult ovary Session AM et al. (2016) GSM1893247,GSM1893261 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 brain - adult RNA-Seq adult brain Session AM et al. (2016) GSM1893239,GSM1893253 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 spleen - adult RNA-Seq adult spleen Session AM et al. (2016) GSM1893250,GSM1893264 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 stomach - adult RNA-Seq adult stomach Session AM et al. (2016) GSM1893251,GSM1893265 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 liver - adult RNA-Seq adult liver Session AM et al. (2016) GSM1893244,GSM1893258 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73419 Taejoon Kwon Tissue gene expression of Xenopus laevis J strain [tissue] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); t 27762356 52612 SRP064167 skin - adult RNA-Seq adult skin Session AM et al. (2016) GSM1893249,GSM1893263 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF25 RNA-Seq NF25 embryo Session AM et al. (2016) GSM1893590,GSM1893604 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF8 RNA-Seq NF8 embryo Session AM et al. (2016) GSM1893584,GSM1893598,GSM1893608 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF10-10.5 RNA-Seq NF10 embryo Session AM et al. (2016) GSM1893586,GSM1893600,GSM1893609 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF9 RNA-Seq NF9 embryo Session AM et al. (2016) GSM1893585,GSM1893599 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF35/36 RNA-Seq NF35/36 embryo Session AM et al. (2016) GSM1893592,GSM1893606,GSM1893610 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 oocyte - oocyte V-VI RNA-Seq oocyte V oocyte Session AM et al. (2016) GSM1893597 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 oocyte - oocyte I-II RNA-Seq oocyte I oocyte Session AM et al. (2016) GSM1893595 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF15 RNA-Seq NF15 embryo Session AM et al. (2016) GSM1893588,GSM1893602 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 oocyte - oocyte III-IV RNA-Seq oocyte III oocyte Session AM et al. (2016) GSM1893596 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF12 RNA-Seq NF12 embryo Session AM et al. (2016) GSM1893587,GSM1893601 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 egg - unfertilized egg RNA-Seq egg egg Session AM et al. (2016) GSM1893583,GSM1893594 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF20 RNA-Seq NF20 embryo Session AM et al. (2016) GSM1893589,GSM1893603 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF29/30 RNA-Seq NF29/30 embryo Session AM et al. (2016) GSM1893591,GSM1893605 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73430 Taejoon Kwon Developmental gene expression of Xenopus laevis J strain [stage] Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair) 27762356 52612 SRP064186 WE - NF40 RNA-Seq NF40 embryo Session AM et al. (2016) GSM1893593,GSM1893607 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF6 RNA-Seq NF6 embryo Peshkin L et al. (2015) GSM1904665 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF2 RNA-Seq NF2 embryo Peshkin L et al. (2015) GSM1904664 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF14 RNA-Seq NF14 embryo Peshkin L et al. (2015) GSM1904673 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF20 RNA-Seq NF20 embryo Peshkin L et al. (2015) GSM1904676 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - mature egg RNA-Seq mature egg embryo Peshkin L et al. (2015) GSM1904663 RNA-Seq/Whole Embryo/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF18 RNA-Seq NF18 embryo Peshkin L et al. (2015) GSM1904675 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF12 RNA-Seq NF12 embryo Peshkin L et al. (2015) GSM1904672 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF33/34 RNA-Seq NF33/34 embryo Peshkin L et al. (2015) GSM1904680 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF29/30 RNA-Seq NF29/30 embryo Peshkin L et al. (2015) GSM1904679 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF8 RNA-Seq NF8 embryo Peshkin L et al. (2015) GSM1904668,GSM1904669 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF26 RNA-Seq NF26 embryo Peshkin L et al. (2015) GSM1904678 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF23 RNA-Seq NF23 embryo Peshkin L et al. (2015) GSM1904677 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF16 RNA-Seq NF16 embryo Peshkin L et al. (2015) GSM1904674 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF10 RNA-Seq NF10 embryo Peshkin L et al. (2015) GSM1904671 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF6.5 RNA-Seq NF6.5 embryo Peshkin L et al. (2015) GSM1904666 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF9 RNA-Seq NF9 embryo Peshkin L et al. (2015) GSM1904670 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73870 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynab 26555057 51556 SRP064629 WE - NF7 RNA-Seq NF7 embryo Peshkin L et al. (2015) GSM1904667 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF16 RNA-Seq NF16 embryo Peshkin L et al. (2015) GSM1905648 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF29/30 RNA-Seq NF29/30 embryo Peshkin L et al. (2015) GSM1905653 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF12 RNA-Seq NF12 embryo Peshkin L et al. (2015) GSM1905646 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF20 RNA-Seq NF20 embryo Peshkin L et al. (2015) GSM1905650 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF33/34 RNA-Seq NF33/34 embryo Peshkin L et al. (2015) GSM1905654 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF6 RNA-Seq NF6 embryo Peshkin L et al. (2015) GSM1905639 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF6.5 RNA-Seq NF6.5 embryo Peshkin L et al. (2015) GSM1905640 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF26 RNA-Seq NF26 embryo Peshkin L et al. (2015) GSM1905652 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF23 RNA-Seq NF23 embryo Peshkin L et al. (2015) GSM1905651 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF14 RNA-Seq NF14 embryo Peshkin L et al. (2015) GSM1905647 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF7 RNA-Seq NF7 embryo Peshkin L et al. (2015) GSM1905641 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF2 RNA-Seq NF2 embryo Peshkin L et al. (2015) GSM1905638 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF8 RNA-Seq NF8 embryo Peshkin L et al. (2015) GSM1905642,GSM1905643 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF10 RNA-Seq NF10 embryo Peshkin L et al. (2015) GSM1905645 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - mature egg RNA-Seq mature egg embryo Peshkin L et al. (2015) GSM1905637 RNA-Seq/Whole Embryo/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF18 RNA-Seq NF18 embryo Peshkin L et al. (2015) GSM1905649 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 73904 Esther Pearl On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCe 26555057 51556 SRP064686 WE - NF9 RNA-Seq NF9 embryo Peshkin L et al. (2015) GSM1905644 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 m6A** testis - adult MeDIP-seq adult testis Koziol MJ et al. (2016) GSM1912905,GSM1912906 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 m6A adipose tissue - adult MeDIP-seq adult adipose tissue Koziol MJ et al. (2016) GSM1912891,GSM1912892 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 Rabbit IgG testis - adult MeDIP-seq adult testis Koziol MJ et al. (2016) GSM1912899,GSM1912900 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 testis - adult MeDIP-seq adult testis Koziol MJ et al. (2016) GSM1912897,GSM1912898 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 oviduct - adult MeDIP-seq adult oviduct Koziol MJ et al. (2016) GSM1912893,GSM1912894 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 m6A* testis - adult MeDIP-seq adult testis Koziol MJ et al. (2016) GSM1912903,GSM1912904 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 m6A testis - adult MeDIP-seq adult testis Koziol MJ et al. (2016) GSM1912901,GSM1912902 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 adipose tissue - adult MeDIP-seq adult adipose tissue Koziol MJ et al. (2016) GSM1912889,GSM1912890 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74184 Charles Bradshaw Methylome analysis of deoxyadenosines in higher eukaryotes Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon Determining regions of deoxyadenosine methylation in M. musculus kidney and X. laevis fat, oviduct and testes 26689968 51669 SRP065025 m6A oviduct - adult MeDIP-seq adult oviduct Koziol MJ et al. (2016) GSM1912895,GSM1912896 MeDIP-seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt 74470 Leonid Peshkin Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then colle 28283406 53166 SRP065480 WE B strain - NF42 RNA-Seq NF42 embryo Savova V et al. (2017) GSM1921263 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Readme.txt 74470 Leonid Peshkin Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then colle 28283406 53166 SRP065480 WE B x J cross- NF42 RNA-Seq NF42 embryo Savova V et al. (2017) GSM1921264 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Readme.txt 74470 Leonid Peshkin Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then colle 28283406 53166 SRP065480 WE J strain - NF42 RNA-Seq NF42 embryo Savova V et al. (2017) GSM1921265 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult - Trial 1 WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937543 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE (female) - adult WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937550,GSM1937551 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF28 WTTS-Seq NF28 embryo Zhou X et al. (2016) GSM1937560,GSM1937561 WTTS-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult - Trial 7 WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937549 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult - Trial 6 WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937548 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult - Trial 3 WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937545 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult - Trial 5 WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937547 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF6 RNA-Seq NF6 embryo Zhou X et al. (2016) GSM1937563,GSM1937564 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF15 WTTS-Seq NF15 embryo Zhou X et al. (2016) GSM1937558,GSM1937559 WTTS-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF11 RNA-Seq NF11 embryo Zhou X et al. (2016) GSM1937567,GSM1937568 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult - Trial 2 WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937544 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF8 RNA-Seq NF8 embryo Zhou X et al. (2016) GSM1937565,GSM1937566 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF11 (WTTS-Seq) WTTS-Seq NF11 embryo Zhou X et al. (2016) GSM1937556,GSM1937557 WTTS-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult RNA-Seq adult whole organism Zhou X et al. (2016) GSM1937562 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF8 (WTTS-Seq) WTTS-Seq NF8 embryo Zhou X et al. (2016) GSM1937554,GSM1937555 WTTS-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - adult - Trial 4 WTTS-Seq adult whole organism Zhou X et al. (2016) GSM1937546 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 74919 Zhihua Jiang Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay. The same sample wa 27098915 52200 SRP066064 WE - NF6 (WTTS-Seq) WTTS-Seq NF6 embryo Zhou X et al. (2016) GSM1937552,GSM1937553 WTTS-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K27me3 spermatid - adult (1) ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944504 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K4me2 spermatozoon - adult ChIP-Seq adult spermatozoon Teperek M et al. (2016) GSM1944474,GSM1944476,GSM1944478 ChIP-Seq/Epigenetic/H3K4me2 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K4me3 spermatozoon - adult ChIP-Seq adult spermatozoon Teperek M et al. (2016) GSM1944479,GSM1944481,GSM1944483 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatozoon - NF10.5-11.5 (control) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944440,GSM1944442,GSM1944444,GSM1944446 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatozoon - NF10.5-11.5 (control) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944440,GSM1944442,GSM1944444,GSM1944446 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatozoon - NF10.5-11.5 (control) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944440,GSM1944442,GSM1944444,GSM1944446 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 input spermatid - adult ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944490,GSM1944492,GSM1944494 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 spermatid - adult (MBD-Seq) MBD-Seq adult spermatid Teperek M et al. (2016) GSM1944470,GSM1944471,GSM1944472 MBD-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 spermatid - adult (MNase-Seq) MNase-Seq adult spermatid Teperek M et al. (2016) GSM1944458,GSM1944459,GSM1944460 Chromatin Accessibility/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K27me3 spermatid - adult (2) ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944503,GSM1944505 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 input spermatozoon - adult ChIP-Seq adult spermatozoon Teperek M et al. (2016) GSM1944473,GSM1944475,GSM1944477 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 input spermatozoon - adult (MBD-Seq) MBD-Seq adult spermatozoon Teperek M et al. (2016) GSM1944461,GSM1944462,GSM1944463 MBD-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 spermatozoon - adult (MBD-Seq) MBD-Seq adult spermatozoon Teperek M et al. (2016) GSM1944464,GSM1944465,GSM1944466 MBD-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K27me3 spermatozoon - adult (1) ChIP-Seq adult spermatozoon Teperek M et al. (2016) GSM1944488 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 input spermatozoon - adult H3K4me3 ChIP-Seq adult spermatozoon Teperek M et al. (2016) GSM1944480,GSM1944482 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 input spermatid - adult H3K4me3 ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944496 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatozoon - NF10.5-11.5 (PE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944400,GSM1944412,GSM1944413 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatozoon - NF10.5-11.5 (PE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944400,GSM1944412,GSM1944413 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944418,GSM1944420,GSM1944421,GSM1944423 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944418,GSM1944420,GSM1944421,GSM1944423 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944418,GSM1944420,GSM1944421,GSM1944423 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K4me3 spermatid - adult (1) ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944497 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K4me3 spermatid - adult (2) ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944498,GSM1944499 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm5b + spermatid - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm5b + spermatid - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm5b + spermatid - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatozoon - NF10.5-11.5 (SE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944402,GSM1944404,GSM1944406,GSM1944408 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatozoon - NF10.5-11.5 (SE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944402,GSM1944404,GSM1944406,GSM1944408 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatid - NF10.5-11.5 (PE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944401,GSM1944410,GSM1944411 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatid - NF10.5-11.5 (PE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944401,GSM1944410,GSM1944411 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 spermatozoon - adult (MNase-Seq) MNase-Seq adult spermatozoon Teperek M et al. (2016) GSM1944455,GSM1944456,GSM1944457 Chromatin Accessibility/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm5b + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944417,GSM1944419,GSM1944422,GSM1944424 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm5b + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944417,GSM1944419,GSM1944422,GSM1944424 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm5b + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944417,GSM1944419,GSM1944422,GSM1944424 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 spermatid - adult RNA-Seq adult spermatid Teperek M et al. (2016) GSM1944414,GSM1944415,GSM1944416 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K27me3 spermatozoon - adult (2) ChIP-Seq adult spermatozoon Teperek M et al. (2016) GSM1944487,GSM1944489 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K9me3 spermatid - adult ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944500,GSM1944501,GSM1944502 ChIP-Seq/Epigenetic/H3K9me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatid - NF10.5-11.5 (control) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatid - NF10.5-11.5 (control) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + spermatid - NF10.5-11.5 (control) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K9me3 spermatozoon - adult ChIP-Seq adult spermatozoon Teperek M et al. (2016) GSM1944484,GSM1944485,GSM1944486 ChIP-Seq/Epigenetic/H3K9me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 H3K4me2 spermatid - adult ChIP-Seq adult spermatid Teperek M et al. (2016) GSM1944491,GSM1944493,GSM1944495 ChIP-Seq/Epigenetic/H3K4me2 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 input spermatid - adult (MBD-Seq) MBD-Seq adult spermatid Teperek M et al. (2016) GSM1944467,GSM1944468,GSM1944469 MBD-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatid - NF10.5-11.5 (SE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944403,GSM1944405,GSM1944407,GSM1944409 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + UV + spermatid - NF10.5-11.5 (SE) RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944403,GSM1944405,GSM1944407,GSM1944409 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm6b + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944439,GSM1944441,GSM1944443,GSM1944445 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm6b + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944439,GSM1944441,GSM1944443,GSM1944445 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm6b + spermatozoon - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944439,GSM1944441,GSM1944443,GSM1944445 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm6b + spermatid - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944447,GSM1944448,GSM1944452,GSM1944454 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm6b + spermatid - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944447,GSM1944448,GSM1944452,GSM1944454 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75164 Charles Bradshaw Sperm is epigenetically programmed to regulate gene transcription in embryo Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien 48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 r 27034506 53997 SRP066384 WE + kdm6b + spermatid - NF10.5-11.5 RNA-Seq NF10.5 embryo Teperek M et al. (2016) GSM1944447,GSM1944448,GSM1944452,GSM1944454 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt 75278 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 upper blastopore lip - NF10.5 RNA-Seq NF10.5 upper blastopore lip Ding Y et al. (2017) GSM1948718,GSM1948720,GSM1948722 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Readme.txt 75278 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 WE - NF10.5 RNA-Seq NF10.5 embryo Ding Y et al. (2017) GSM1948717 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Readme.txt 75278 Edward De Robertis Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced. 27016259 51980 SRP066508 lower blastopore lip - NF10.5 RNA-Seq NF10.5 lower blastopore lip Ding Y et al. (2017) GSM1948719,GSM1948721,GSM1948723 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Readme.txt 76059 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.BAM processed data files (a format not accepted by GEO) were generate 27762356 52612 SRP067434 input WE - NF10.5 ChIP-Seq NF10.5 embryo Session AM et al. (2016) GSM1973501 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt 76059 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.BAM processed data files (a format not accepted by GEO) were generate 27762356 52612 SRP067434 ep300 WE - NF10.5 ChIP-Seq NF10.5 embryo Session AM et al. (2016) GSM1973495,GSM1973496 ChIP-Seq/Transcription Factor/ep300 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt 76059 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.BAM processed data files (a format not accepted by GEO) were generate 27762356 52612 SRP067434 Pol II WE - NF10.5 ChIP-Seq NF10.5 embryo Session AM et al. (2016) GSM1973499,GSM1973500 ChIP-Seq/Transcription Factor/Pol II laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt 76059 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.BAM processed data files (a format not accepted by GEO) were generate 27762356 52612 SRP067434 H3K36me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Session AM et al. (2016) GSM1973497,GSM1973498 ChIP-Seq/Epigenetic/H3K36me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt 76059 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.BAM processed data files (a format not accepted by GEO) were generate 27762356 52612 SRP067434 H3K4me3 WE - NF10.5 ChIP-Seq NF10.5 embryo Session AM et al. (2016) GSM1973491,GSM1973492 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt 76059 Simon van Heeringen ChIP-sequencing in stage 10.5 Xenopus laevis embryos Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos. Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.BAM processed data files (a format not accepted by GEO) were generate 27762356 52612 SRP067434 H3K4me1 WE - NF10.5 ChIP-Seq NF10.5 embryo Session AM et al. (2016) GSM1973493,GSM1973494 ChIP-Seq/Epigenetic/H3K4me1 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt 76247 Ozren Bogdanovic Single-base resolution methylome of Xenopus laevis embryos Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing Ozren Bogdanovic, Ryan Lister WGBS profiling of Xenopus laevis st.10.5 embryos 27762356 52612 SRP067679 WE - NF10.5 Bisulfite-Seq NF10.5 embryo Session AM et al. (2016) GSM1977638 Bisulfite-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981745,GSM1981746 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981745,GSM1981746 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981773,GSM1981774 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj + DNmcidas - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981767,GSM1981768 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj + DNmcidas - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981767,GSM1981768 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj + DNmcidas - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981765,GSM1981766 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj + DNmcidas - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981765,GSM1981766 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981747,GSM1981748 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981747,GSM1981748 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj + DNmcidas - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981763,GSM1981764 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj + DNmcidas - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981763,GSM1981764 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + mcidas - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981761,GSM1981762 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + mcidas - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981761,GSM1981762 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981755,GSM1981756 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981755,GSM1981756 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981749,GSM1981750 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981749,GSM1981750 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + foxi1 - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981777,GSM1981778 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + foxi1 - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981777,GSM1981778 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + foxi1 - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981775,GSM1981776 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + foxi1 - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981775,GSM1981776 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + foxi1 - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981779,GSM1981780 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + foxi1 - NF18 RNA-Seq NF18 animal cap Quigley IK et al. (2017) GSM1981779,GSM1981780 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981751,GSM1981752 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981751,GSM1981752 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981769,GSM1981770 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + mcidas - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981757,GSM1981758 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + mcidas - NF13 RNA-Seq NF13 animal cap Quigley IK et al. (2017) GSM1981757,GSM1981758 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981771,GSM1981772 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981753,GSM1981754 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + DNrbpj - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981753,GSM1981754 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + mcidas - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981759,GSM1981760 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76342 Ian Quigley RNAseq profiling of multiciliated cells To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type Ian Quigley, Chris Kintner We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or 28103240 53709 SRP067781 animal cap + CAnotch1 + mcidas - NF16 RNA-Seq NF16 animal cap Quigley IK et al. (2017) GSM1981759,GSM1981760 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt 76363 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicil 28103240 53709 SRP067835 WE - NF10.5 Hi-C NF10.5 embryo Quigley IK et al. (2017) GSM1982234,GSM1982235 Hi-C/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt 76363 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicil 28103240 53709 SRP067835 animal cap + mcidas - NF18 Hi-C NF18 animal cap Quigley IK et al. (2017) GSM1982233 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt 76363 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicil 28103240 53709 SRP067835 animal cap + mcidas - NF18 Hi-C NF18 animal cap Quigley IK et al. (2017) GSM1982233 Hi-C/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt 76363 Ian Quigley 3D chromosomal capture of X. laevis To determine 3D chromosomal structure in differentating ectoderm of the frog Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: Ian Quigley, Chris Kintner Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicil 28103240 53709 SRP067835 animal cap - NF18 Hi-C NF18 animal cap Quigley IK et al. (2017) GSM1982232 Hi-C/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt 76915 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 WE + Ascl1 control MO - NF11 RNA-Seq NF11 embryo Gao L et al. (2016) GSM2040681,GSM2040682,GSM2040683 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt 76915 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 WE + Ascl1 control MO - NF11 RNA-Seq NF11 embryo Gao L et al. (2016) GSM2040681,GSM2040682,GSM2040683 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt 76915 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 WE + Ascl1 MO - NF11 RNA-Seq NF11 embryo Gao L et al. (2016) GSM2040684,GSM2040685,GSM2040686 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt 76915 Li Gao A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta Li Gao, Xin Ma, Qinghua Tao Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing. 26700681 51664 SRP068506 WE + Ascl1 MO - NF11 RNA-Seq NF11 embryo Gao L et al. (2016) GSM2040684,GSM2040685,GSM2040686 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt 76991 Gert Veenstra Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068637 WE + kat2a KD - NF10-10.5 RNA-Seq NF10 embryo Gazdag E et al. (2016) GSM2042204,GSM2042205 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Readme.txt 76991 Gert Veenstra Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068637 WE + kat2a KD - NF10-10.5 RNA-Seq NF10 embryo Gazdag E et al. (2016) GSM2042204,GSM2042205 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Readme.txt 76991 Gert Veenstra Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068637 WE - NF10-10.5 RNA-Seq NF10 embryo Gazdag E et al. (2016) GSM2042206,GSM2042207 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Readme.txt 76994 Gert Veenstra Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068680 WE + tbp + tbpl2 + tbpl1 - NF10-10.5 RNA-Seq NF10 embryo Gazdag E et al. (2016) GSM2042215,GSM2042216 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Readme.txt 76994 Gert Veenstra Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068680 WE + tbp + tbpl2 + tbpl1 - NF10-10.5 RNA-Seq NF10 embryo Gazdag E et al. (2016) GSM2042215,GSM2042216 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Readme.txt 76994 Gert Veenstra Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra Differential expression analysis using RNA sequencing 26952988 51942 SRP068680 WE - NF10-10.5 RNA-Seq NF10 embryo Gazdag E et al. (2016) GSM2042217,GSM2042218 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Readme.txt 77281 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high 0 57140 SRP068951 WE + EtOH - NF18 RNA-Seq NF18 embryo GSM2047238,GSM2047239,GSM2047240,GSM2047241,GSM2047242 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt 77281 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high 0 57140 SRP068951 WE + EtOH - NF18 RNA-Seq NF18 embryo GSM2047238,GSM2047239,GSM2047240,GSM2047241,GSM2047242 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt 77281 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high 0 57140 SRP068951 WE + NRX-204647 - NF18 RNA-Seq NF18 embryo GSM2047233,GSM2047234,GSM2047235,GSM2047236,GSM2047237 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt 77281 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high 0 57140 SRP068951 WE + NRX-204647 - NF18 RNA-Seq NF18 embryo GSM2047233,GSM2047234,GSM2047235,GSM2047236,GSM2047237 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt 77281 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high 0 57140 SRP068951 WE + NRX-204647 (High) - NF18 RNA-Seq NF18 embryo GSM2047228,GSM2047229,GSM2047230,GSM2047231,GSM2047232 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt 77281 Toshi Shioda RNA-seq based identification of potential RARgamma target genes in Xenopus laevis The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high 0 57140 SRP068951 WE + NRX-204647 (High) - NF18 RNA-Seq NF18 embryo GSM2047228,GSM2047229,GSM2047230,GSM2047231,GSM2047232 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt 77363 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were f 27091726 52028 SRP069034 input WE - NF11.5 ChIP-Seq NF11.5 embryo Kjolby RAS et al. (2017) GSM2050741,GSM2050742,GSM2050743 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Readme.txt 77363 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were f 27091726 52028 SRP069034 beta Catenin WE - NF11.5 ChIP-Seq NF11.5 embryo Kjolby RAS et al. (2017) GSM2050738,GSM2050739,GSM2050740 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Readme.txt 77363 Richard Harland Genome-wide binding pattern of β-catenin during Xenopus gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were f 27091726 52028 SRP069034 beta Catenin WE - NF11.5 ChIP-Seq NF11.5 embryo Kjolby RAS et al. (2017) GSM2050738,GSM2050739,GSM2050740 ChIP-Seq/Transcription Factor/beta Catenin laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Readme.txt 77364 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. 27091726 52028 SRP069035 WE + dkk1 - NF11.5 RNA-Seq NF11.5 embryo Kjolby RAS et al. (2017) GSM2050745,GSM2050747,GSM2050749 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Readme.txt 77364 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. 27091726 52028 SRP069035 WE + dkk1 - NF11.5 RNA-Seq NF11.5 embryo Kjolby RAS et al. (2017) GSM2050745,GSM2050747,GSM2050749 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Readme.txt 77364 Richard Harland Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte Richard Harland, Rachel Kjolby, Richard Harland Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. 27091726 52028 SRP069035 WE - NF11.5 RNA-Seq NF11.5 embryo Kjolby RAS et al. (2017) GSM2050744,GSM2050746,GSM2050748 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - naive - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057922 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - crushed - day 1 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057926 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - crushed - day 11 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057932 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - crushed - day 7 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057930 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - crushed - day 3 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057928 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - sham surgery control - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057923 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retina - juvenile RNA-Seq juvenile retina Whitworth GB et al. (2017) GSM2057921 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - sham surgery crush - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057924 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - control - day 11 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057931 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - control - day 1 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057925 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - control - day 3 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057927 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 77724 Gregg Whitworth Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP m 27471010 52302 SRP069816 retinal ganglion cell - control - day 7 post op - juvenile RNA-Seq juvenile retinal ganglion cel Whitworth GB et al. (2017) GSM2057929 RNA-Seq/Embryonic Tissues/juvenile frog laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 H3K4me3 animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068802 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 input animal cap - NF18 - 9hr ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068810,GSM2068811 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 H3K27ac animal cap - NF18 - 3hr ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068803 ChIP-Seq/Epigenetic/H3K27ac laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 input animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068812 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 input animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068814 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 Rad21 animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068805 ChIP-Seq/Transcription Factor/Rad21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 foxj1 animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068808 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 foxj1 animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068808 ChIP-Seq/Transcription Factor/Foxj1 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 H3K27ac animal cap - NF18 - 9hr ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068804 ChIP-Seq/Epigenetic/H3K27ac laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 myb animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068806 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 myb animal cap - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068806 ChIP-Seq/Transcription Factor/Myb laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 foxj1 animal cap + rfx2 MO - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068809 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 foxj1 animal cap + rfx2 MO - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068809 ChIP-Seq/Transcription Factor/Foxj1 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 foxj1 animal cap + rfx2 MO - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068809 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 myb animal cap + mcidas - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068807 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 myb animal cap + mcidas - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068807 ChIP-Seq/Transcription Factor/Myb laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 input animal cap - NF18 - 3hr ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068813 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78176 Ian Quigley Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific Ian Quigley, Chris Kintner Some embryos were harvested as wild-types; in other experiments, we injected embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino 28103240 53709 SRP070664 input animal cap + mcidas - NF18 ChIP-Seq NF18 animal cap Quigley IK et al. (2017) GSM2068815 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt 78854 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was har 28867550 53988 SRP071089 accessory olfactory bulb + Non-sibling medium - NF45 miRNA-Seq NF45 accessory olfactory Dulcis D et al. (2017) GSM2079621 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt 78854 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was har 28867550 53988 SRP071089 accessory olfactory bulb + Non-sibling medium - NF45 miRNA-Seq NF45 accessory olfactory Dulcis D et al. (2017) GSM2079621 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt 78854 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was har 28867550 53988 SRP071089 accessory olfactory bulb + Sibling medium - NF45 miRNA-Seq NF45 accessory olfactory Dulcis D et al. (2017) GSM2079620 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt 78854 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was har 28867550 53988 SRP071089 accessory olfactory bulb + Sibling medium - NF45 miRNA-Seq NF45 accessory olfactory Dulcis D et al. (2017) GSM2079620 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt 78854 Giordano Lippi Peptide-signaling and miRNA regulation of transmitter switching affecting social preference Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was har 28867550 53988 SRP071089 accessory olfactory bulb + Orphan medium - NF45 miRNA-Seq NF45 accessory olfactory Dulcis D et al. (2017) GSM2079619 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt 80971 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and 28096217 53019 SRP074230 animal pole - oocyte VI RNA-Seq oocyte VI animal pole Owens DA et al. (2017) GSM2139449,GSM2139451,GSM2139453 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Readme.txt 80971 Mary King High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants Mary King, Dawn Owens, Amanda Butler, Mary King Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and 28096217 53019 SRP074230 vegetal pole - oocyte VI RNA-Seq oocyte VI vegetal pole Owens DA et al. (2017) GSM2139450,GSM2139452,GSM2139454 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Readme.txt 81458 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in dupl 27475627 52307 SRP075201 vegetal yolk mass - NF10-10.25 RNA-Seq NF10 vegetal yolk mass Blitz IL et al. (2017) GSM2152754,GSM2152755 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt 81458 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in dupl 27475627 52307 SRP075201 animal cap - NF10-10.25 RNA-Seq NF10 animal cap Blitz IL et al. (2017) GSM2152748,GSM2152749 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt 81458 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in dupl 27475627 52307 SRP075201 ventral marginal zone - NF10-10.25 RNA-Seq NF10 ventral marginal zon Blitz IL et al. (2017) GSM2152756,GSM2152757 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt 81458 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in dupl 27475627 52307 SRP075201 WE - NF10-10.25 RNA-Seq NF10 embryo Blitz IL et al. (2017) GSM2152758,GSM2152759 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt 81458 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in dupl 27475627 52307 SRP075201 lateral marginal zone - NF10-10.25 RNA-Seq NF10 lateral Blitz IL et al. (2017) GSM2152752,GSM2152753 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt 81458 Kitt Paraiso Regional expression of X. tropicalis transcription factors in early gastrula embryos Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were Kitt Paraiso, Ira Blitz, Kitt Paraiso mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in dupl 27475627 52307 SRP075201 dorsal marginal zone - NF10-10.25 RNA-Seq NF10 dorsal marginal zone Blitz IL et al. (2017) GSM2152750,GSM2152751 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt 82153 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 Pol II WE + cdk9 MO - NF16 ChIP-Seq NF16 embryo Hatch VL et al. (2016) GSM2184890 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt 82153 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 Pol II WE + cdk9 MO - NF16 ChIP-Seq NF16 embryo Hatch VL et al. (2016) GSM2184890 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt 82153 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 Pol II WE + hbg1 cMO - NF16 ChIP-Seq NF16 embryo Hatch VL et al. (2016) GSM2184891 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt 82153 Saartje Hontelez CDK9 knock-out Xenopus tropicalis To study the role of CDK9 in RNAPII pausing Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis Knock-down of CDK9 by injection of CDK9.S morpholino 27343897 52355 SRP076016 Pol II WE + hbg1 cMO - NF16 ChIP-Seq NF16 embryo Hatch VL et al. (2016) GSM2184891 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 animal cap + CAbmpr1a - NF11 miRNA-Seq NF11 animal cap Shah VV et al. (2017) GSM2218802,GSM2218803,GSM2218804 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 animal cap + CAbmpr1a - NF11 miRNA-Seq NF11 animal cap Shah VV et al. (2017) GSM2218802,GSM2218803,GSM2218804 miRNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 animal cap + nog - NF11 miRNA-Seq NF11 animal cap Shah VV et al. (2017) GSM2218805,GSM2218806,GSM2218807 miRNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 animal cap + nog - NF11 miRNA-Seq NF11 animal cap Shah VV et al. (2017) GSM2218805,GSM2218806,GSM2218807 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 myc animal cap + CAbmpr1a - NF11 RIP-Seq NF11 animal cap Shah VV et al. (2017) GSM2218808,GSM2218809,GSM2218810,GSM2218811 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 myc animal cap + CAbmpr1a - NF11 RIP-Seq NF11 animal cap Shah VV et al. (2017) GSM2218808,GSM2218809,GSM2218810,GSM2218811 RIP-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 WE + nog - NF11 RNA-Seq NF11 embryo Shah VV et al. (2017) GSM2218822,GSM2218823,GSM2218824 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 WE + nog - NF11 RNA-Seq NF11 embryo Shah VV et al. (2017) GSM2218822,GSM2218823,GSM2218824 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 myc animal cap + nog - NF11 RIP-Seq NF11 animal cap Shah VV et al. (2017) GSM2218812,GSM2218813,GSM2218814,GSM2218815 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 myc animal cap + nog - NF11 RIP-Seq NF11 animal cap Shah VV et al. (2017) GSM2218812,GSM2218813,GSM2218814,GSM2218815 RIP-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 WE + CAbmpr1a - NF11 RNA-Seq NF11 embryo Shah VV et al. (2017) GSM2218819,GSM2218820,GSM2218821 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 WE + CAbmpr1a - NF11 RNA-Seq NF11 embryo Shah VV et al. (2017) GSM2218819,GSM2218820,GSM2218821 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt 83784 Amy Sater Identification of microRNAs and microRNA targets in Xenopus ectoderm Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di Amy Sater, Vrutant Shah Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus. 27623002 52452 SRP077327 myc animal cap - NF11 RIP-Seq NF11 animal cap Shah VV et al. (2017) GSM2218816,GSM2218817,GSM2218818 RIP-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Foxa2 WE - NF10.25 ChIP-Seq NF10.25 embryo Charney RM et al. (2017) GSM2263597 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Foxa2 WE - NF10.25 ChIP-Seq NF10.25 embryo Charney RM et al. (2017) GSM2263597 ChIP-Seq/Transcription Factor/Foxa2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Pol II WE - NF10.25 ChIP-Seq NF10.25 embryo Charney RM et al. (2017) GSM2263595 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Pol II WE - NF7 ChIP-Seq NF7 embryo Charney RM et al. (2017) GSM2263592 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Foxh1 WE - NF8 ChIP-Seq NF8 embryo Charney RM et al. (2017) GSM2263590 ChIP-Seq/Transcription Factor/Foxh1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Pol II WE - NF8 ChIP-Seq NF8 embryo Charney RM et al. (2017) GSM2263593 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Pol II WE - NF9 ChIP-Seq NF9 embryo Charney RM et al. (2017) GSM2263594 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 TLE WE - NF8 ChIP-Seq NF8 embryo Charney RM et al. (2017) GSM2263596 ChIP-Seq/Transcription Factor/Tle tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 Foxh1 WE - NF9 ChIP-Seq NF9 embryo Charney RM et al. (2017) GSM2263591 ChIP-Seq/Transcription Factor/Foxh1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 input WE - NF8 ChIP-Seq NF8 embryo Charney RM et al. (2017) GSM2263598 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 input WE - NF9 ChIP-Seq NF9 embryo Charney RM et al. (2017) GSM2263600 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 85273 Rebekah Charney Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg Rebekah Charney, Ken Cho ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer d 28325473 53575 SRP081096 input WE - NF8 ChIP-Seq NF8 embryo Charney RM et al. (2017) GSM2263599 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt 86382 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embry 29266590 54381 SRP084249 WE - NF10.5 RNA-Seq NF10.5 embryo Skariah G et al. (2018) GSM2301411,GSM2301412,GSM2301413 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt 86382 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embry 29266590 54381 SRP084249 WE - NF10.5 RNA-Seq NF10.5 embryo Skariah G et al. (2018) GSM2301411,GSM2301412,GSM2301413 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt 86382 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embry 29266590 54381 SRP084249 WE + mov10 MO - NF10.5 RNA-Seq NF10.5 embryo Skariah G et al. (2018) GSM2301414,GSM2301415 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt 86382 Stephanie Ceman RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the Stephanie Ceman, Geena Skariah The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embry 29266590 54381 SRP084249 WE + mov10 MO - NF10.5 RNA-Seq NF10.5 embryo Skariah G et al. (2018) GSM2301414,GSM2301415 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308334,GSM2308335 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308334,GSM2308335 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308334,GSM2308335 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308342,GSM2308343 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308342,GSM2308343 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308342,GSM2308343 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308330,GSM2308331 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308330,GSM2308331 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308330,GSM2308331 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308330,GSM2308331 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308338,GSM2308339 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308338,GSM2308339 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308338,GSM2308339 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - neurog2-GR + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308338,GSM2308339 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308340,GSM2308341 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308340,GSM2308341 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308340,GSM2308341 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308340,GSM2308341 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308332,GSM2308333 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308332,GSM2308333 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308332,GSM2308333 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308332,GSM2308333 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308336,GSM2308337 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308336,GSM2308337 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308336,GSM2308337 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF26 RNA-Seq NF26 animal cap GSM2308336,GSM2308337 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308328,GSM2308329 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308328,GSM2308329 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308328,GSM2308329 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86649 Gabriela Salinas-Riester Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction. RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1a 0 57684 SRP089812 animal cap - ptf1a + DEX + animal cap explant - NF10.5-11 RNA-Seq NF10.5 animal cap GSM2308328,GSM2308329 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt 86883 Cei Abreu-Goodger miR-182 regulates Slit2-mediated axon guidance by modulating the local translation of a specific mRNA During brain wiring, mRNAs are trafficked into axons and growth cones where they are differentially translated in response to extrinsic signals. Diffe Cei Abreu-Goodger, Anaïs Bellon, Archana Iyer, Simone Bridi, Flora Lee, Cesaré Ovando-Vázquez, Eloina Corradi, Sara Longhi, Michela Rocuzzo, Stephanie Strohbuecker, Sindhu Naik, Peter Sarkies, Eric Miska, Christine Holt, Marie-Laure Baudet Two biological replicates, one condition 28147273 53046 SRP089815 axon - eye explant - NF37/38 miRNA-Seq NF37/38 axon Bellon A et al. (2017) GSM2309835,GSM2309836 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Readme.txt 86883 Cei Abreu-Goodger miR-182 regulates Slit2-mediated axon guidance by modulating the local translation of a specific mRNA During brain wiring, mRNAs are trafficked into axons and growth cones where they are differentially translated in response to extrinsic signals. Diffe Cei Abreu-Goodger, Anaïs Bellon, Archana Iyer, Simone Bridi, Flora Lee, Cesaré Ovando-Vázquez, Eloina Corradi, Sara Longhi, Michela Rocuzzo, Stephanie Strohbuecker, Sindhu Naik, Peter Sarkies, Eric Miska, Christine Holt, Marie-Laure Baudet Two biological replicates, one condition 28147273 53046 SRP089815 axon - eye explant - NF37/38 miRNA-Seq NF37/38 axon Bellon A et al. (2017) GSM2309835,GSM2309836 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 ep300 foregut + BIO - NF20 ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337686 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 ep300 foregut + BIO - NF20 ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337686 ChIP-Seq/Transcription Factor/ep300 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input hindgut + BIO - NF20 (p300) ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337689 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 beta Catenin foregut + BIO - NF20 ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337678 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 beta Catenin foregut + BIO - NF20 ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337678 ChIP-Seq/Transcription Factor/beta Catenin laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input WE - NF20 (smad1) ChIP-Seq NF20 embryo Stevens ML et al. (2017) GSM2337673 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 Smad1 WE - NF20 ChIP-Seq NF20 embryo Stevens ML et al. (2017) GSM2337674 ChIP-Seq/Transcription Factor/Smad1 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 beta Catenin foregut - NF20 ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337676 ChIP-Seq/Transcription Factor/beta Catenin laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 beta Catenin hindgut - NF20 ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337680 ChIP-Seq/Transcription Factor/beta Catenin laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 ep300 foregut - NF20 ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337684 ChIP-Seq/Transcription Factor/ep300 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 beta Catenin hindgut + BIO - NF20 ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337682 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 beta Catenin hindgut + BIO - NF20 ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337682 ChIP-Seq/Transcription Factor/beta Catenin laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 ep300 WE - NF20 ChIP-Seq NF20 embryo Stevens ML et al. (2017) GSM2337672 ChIP-Seq/Transcription Factor/ep300 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input foregut + BIO - NF20 (p300) ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337685 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 ep300 hindgut - NF20 ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337688 ChIP-Seq/Transcription Factor/ep300 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input hindgut - NF20 (bcat) ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337679 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 ep300 hindgut + BIO - NF20 ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337690 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 ep300 hindgut + BIO - NF20 ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337690 ChIP-Seq/Transcription Factor/ep300 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input foregut + BIO - NF20 (bcat) ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337677 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input hindgut + BIO - NF20 (bcat) ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337681 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input hindgut - NF20 (p300) ChIP-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337687 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input WE - NF20 (p300) ChIP-Seq NF20 embryo Stevens ML et al. (2017) GSM2337671 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input foregut - NF20 (p300) ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337683 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87652 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300). 28219948 53106 SRP090888 input foregut - NF20 (bcat) ChIP-Seq NF20 foregut Stevens ML et al. (2017) GSM2337675 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut + dkk1 - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337718,GSM2337719 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut + dkk1 - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337718,GSM2337719 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut mesoderm - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337726,GSM2337727 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337700,GSM2337701,GSM2337702 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut + DMH1 - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337703,GSM2337704,GSM2337705 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut + DMH1 - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337703,GSM2337704,GSM2337705 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut + BIO - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337706,GSM2337707,GSM2337708 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut + BIO - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337706,GSM2337707,GSM2337708 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut mesoderm - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337722,GSM2337723 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut + DMH1 - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337694,GSM2337695,GSM2337696 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut + DMH1 - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337694,GSM2337695,GSM2337696 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut endoderm - NF20 RNA-Seq NF20 foregut primordium Stevens ML et al. (2017) GSM2337720,GSM2337721 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut + BIO - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337697,GSM2337698,GSM2337699 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut + BIO - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337697,GSM2337698,GSM2337699 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337691,GSM2337692,GSM2337693 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337716,GSM2337717 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut - NF20 RNA-Seq NF20 hindgut Stevens ML et al. (2017) GSM2337716,GSM2337717 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut + dkk1 - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337714,GSM2337715 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut + dkk1 - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337714,GSM2337715 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 hindgut endoderm - NF20 RNA-Seq NF20 Stevens ML et al. (2017) GSM2337724,GSM2337725 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337712,GSM2337713 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 foregut - NF20 RNA-Seq NF20 foregut Stevens ML et al. (2017) GSM2337712,GSM2337713 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 87653 Aaron Zorn Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq] Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos. 28219948 53106 SRP090889 dorsal embryo - NF20 RNA-Seq NF20 dorsal Stevens ML et al. (2017) GSM2337709,GSM2337710,GSM2337711 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 tail - NF40 RNA-Seq NF40 tail Chang J et al. (2017) GSM2356631,GSM2356632 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF40 RNA-Seq NF40 regenerating tail Chang J et al. (2017) GSM2356633,GSM2356634 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF40 RNA-Seq NF40 regenerating tail Chang J et al. (2017) GSM2356633,GSM2356634 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF42 +15hpa RNA-Seq NF42 regenerating tail Chang J et al. (2017) GSM2356636 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF42 +15hpa RNA-Seq NF42 regenerating tail Chang J et al. (2017) GSM2356636 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF40 +6h RNA-Seq NF40 regenerating tail Chang J et al. (2017) GSM2356635 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF40 +6h RNA-Seq NF40 regenerating tail Chang J et al. (2017) GSM2356635 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF43 +24hpa RNA-Seq NF43 regenerating tail Chang J et al. (2017) GSM2356637,GSM2356638 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF43 +24hpa RNA-Seq NF43 regenerating tail Chang J et al. (2017) GSM2356637,GSM2356638 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF47 +72hpa RNA-Seq NF47 regenerating tail Chang J et al. (2017) GSM2356639,GSM2356640 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 88975 Jessica Chang RNA-Seq of Xenopus tail regeneration In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Whole tail (WT) samples were obtained from an an initial amputation. Immediately thereafter, a second amputation was performed on the cut tadpole to 28095651 53040 SRP091865 regenerating tail + tail amputation - NF47 +72hpa RNA-Seq NF47 regenerating tail Chang J et al. (2017) GSM2356639,GSM2356640 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt 89165 Zhihua Jiang Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis. We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries fro 30729254 55685 SRP092052 female organism - adult WTTS-Seq adult female organism Zhou X et al. (2019) GSM2359906,GSM2359907 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Readme.txt 89165 Zhihua Jiang Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis. We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries fro 30729254 55685 SRP092052 male organism - adult WTTS-Seq adult male organism Zhou X et al. (2019) GSM2359908,GSM2359909 WTTS-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 foxn4 animal cap + mcidas - NF18 ChIP-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363463 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 foxn4 animal cap + mcidas - NF18 ChIP-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363463 ChIP-Seq/Transcription Factor/Foxn4 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxn4 MO - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363460,GSM2363461 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxn4 MO - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363460,GSM2363461 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxn4 MO - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363460,GSM2363461 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 foxn4 animal cap - NF18 ChIP-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363462 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 foxn4 animal cap - NF18 ChIP-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363462 ChIP-Seq/Transcription Factor/Foxn4 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 input animal cap - NF18 ChIP-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363464,GSM2363465,GSM2363466,GSM2363467,GSM2363468,GSM2363469 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxj1 CRISPR - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363456,GSM2363457 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxj1 CRISPR - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363456,GSM2363457 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxj1 CRISPR - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363456,GSM2363457 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2364660,GSM2364661,GSM2364662 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2364660,GSM2364661,GSM2364662 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxn4 CRISPR - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363458,GSM2363459 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxn4 CRISPR - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363458,GSM2363459 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 89271 Ian Quigley RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR Ian Quigley, Chris Kintner To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin 27864379 52793 SRP092243 animal cap + mcidas + foxn4 CRISPR - NF18 RNA-Seq NF18 animal cap Campbell EP et al. (2016) GSM2363458,GSM2363459 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428183,GSM2428184,GSM2428185,GSM2428186 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428212,GSM2428213,GSM2428214,GSM2428215 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428243,GSM2428244,GSM2428245,GSM2428246 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428200,GSM2428201,GSM2428202 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428191,GSM2428192,GSM2428193,GSM2428194 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428228,GSM2428229,GSM2428230,GSM2428231 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428187,GSM2428188,GSM2428189 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428187,GSM2428188,GSM2428189 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428203,GSM2428204,GSM2428205,GSM2428206,GSM2428207 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428203,GSM2428204,GSM2428205,GSM2428206,GSM2428207 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428195,GSM2428196,GSM2428197,GSM2428198 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428195,GSM2428196,GSM2428197,GSM2428198 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428251,GSM2428252,GSM2428253,GSM2428254 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428251,GSM2428252,GSM2428253,GSM2428254 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428251,GSM2428252,GSM2428253,GSM2428254 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + h3-3a.L - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428247,GSM2428248,GSM2428249,GSM2428250 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + h3-3a.L - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428247,GSM2428248,GSM2428249,GSM2428250 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + h3-3a.L - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428247,GSM2428248,GSM2428249,GSM2428250 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428216,GSM2428217,GSM2428218,GSM2428219 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428216,GSM2428217,GSM2428218,GSM2428219 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428216,GSM2428217,GSM2428218,GSM2428219 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428232,GSM2428233,GSM2428234,GSM2428235 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428232,GSM2428233,GSM2428234,GSM2428235 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428232,GSM2428233,GSM2428234,GSM2428235 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428220,GSM2428221,GSM2428222,GSM2428223 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428220,GSM2428221,GSM2428222,GSM2428223 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428220,GSM2428221,GSM2428222,GSM2428223 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428236,GSM2428237,GSM2428238 RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428236,GSM2428237,GSM2428238 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11 RNA-Seq NF11 ectoderm Hörmanseder E et al. (2017) GSM2428236,GSM2428237,GSM2428238 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm - NF21 RNA-Seq NF21 endoderm Hörmanseder E et al. (2017) GSM2428182 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm - NF21 RNA-Seq NF21 endoderm Hörmanseder E et al. (2017) GSM2428190 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm - NF21 RNA-Seq NF21 endoderm Hörmanseder E et al. (2017) GSM2428199 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + h3-3a.L{K4M} - NF21 RNA-Seq NF21 endoderm Hörmanseder E et al. (2017) GSM2428241,GSM2428242 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + h3-3a.L{K4M} - NF21 RNA-Seq NF21 endoderm Hörmanseder E et al. (2017) GSM2428241,GSM2428242 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + h3-3a.L - NF21 RNA-Seq NF21 endoderm Hörmanseder E et al. (2017) GSM2428239,GSM2428240 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + h3-3a.L - NF21 RNA-Seq NF21 endoderm Hörmanseder E et al. (2017) GSM2428239,GSM2428240 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{H499A_del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428208,GSM2428209 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{H499A_del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428208,GSM2428209 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428210,GSM2428211 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428210,GSM2428211 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428226,GSM2428227 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428226,GSM2428227 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 H3K4me3 endoderm - NF18 ChIP-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428255 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 input endoderm - NF18 ChIP-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428256 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 input endoderm - NF18 ChIP-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428258 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 H3K4me3 endoderm - NF18 ChIP-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428257 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{H499A_del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428224,GSM2428225 RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92366 Angela Simeone H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon 73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq librar 28366589 54691 SRP095083 endoderm + Mmu.kdm5b{H499A_del} - NF18 RNA-Seq NF18 endoderm Hörmanseder E et al. (2017) GSM2428224,GSM2428225 Manipulations/mRNA injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt 92382 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (ea 29065907 54195 SRP095103 H3K4me3 WE - NF9 ChIP-Seq NF9 embryo Elurbe DM et al. (2017) GSM2428815,GSM2428816 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Readme.txt 92382 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (ea 29065907 54195 SRP095103 H3K4me3 WE - NF9 ChIP-Seq NF9 embryo Elurbe DM et al. (2017) GSM2428817,GSM2428818 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Readme.txt 92382 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (ea 29065907 54195 SRP095103 ep300 WE - NF10.5 ChIP-Seq NF10.5 embryo Elurbe DM et al. (2017) GSM2428827,GSM2428828 ChIP-Seq/Transcription Factor/ep300 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Readme.txt 92382 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (ea 29065907 54195 SRP095103 ep300 WE - NF10.5 ChIP-Seq NF10.5 embryo Elurbe DM et al. (2017) GSM2428829,GSM2428830 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Readme.txt 92382 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (ea 29065907 54195 SRP095103 input WE - NF9 ChIP-Seq NF9 embryo Elurbe DM et al. (2017) GSM2428821,GSM2428822 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Readme.txt 92382 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (ea 29065907 54195 SRP095103 input WE - NF9 ChIP-Seq NF9 embryo Elurbe DM et al. (2017) GSM2428823,GSM2428824 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Readme.txt 92382 Simon van Heeringen Regulatory remodeling in the allo-tetraploid frog Xenopus laevis Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (ea 29065907 54195 SRP095103 WE - NF10.5 RNA-Seq NF10.5 embryo Elurbe DM et al. (2017) GSM2428813,GSM2428814 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Ding Y et al. (2017) GSM2446136,GSM2446140 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Ding Y et al. (2017) GSM2446136,GSM2446140 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + LiCl - NF9 RNA-Seq NF9 embryo Ding Y et al. 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(2017) GSM2446137,GSM2446141 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 dorsal WE - dorsal explant - NF10.5 RNA-Seq NF10.5 dorsal Ding Y et al. (2017) GSM2446100,GSM2446105,GSM2446111,GSM2446113,GSM2446115 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + wnt8a - NF10.5 RNA-Seq NF10.5 embryo Ding Y et al. (2017) GSM2446118,GSM2446121,GSM2446124 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + wnt8a - NF10.5 RNA-Seq NF10.5 embryo Ding Y et al. 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(2017) GSM2446128,GSM2446131,GSM2446134 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + cer1 - NF9 RNA-Seq NF9 embryo Ding Y et al. (2017) GSM2446128,GSM2446131,GSM2446134 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + LiCl - NF10.5 RNA-Seq NF10.5 embryo Ding Y et al. (2017) GSM2446099,GSM2446109 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + LiCl - NF10.5 RNA-Seq NF10.5 embryo Ding Y et al. 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(2017) GSM2446104,GSM2446110 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + sia1 - NF10.5 RNA-Seq NF10.5 embryo Ding Y et al. 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(2017) GSM2446138,GSM2446142 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 93195 Edward De Robertis Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis. 28348214 53589 SRP096124 WE + ctnnb1 MO - NF10.5 RNA-Seq NF10.5 embryo Ding Y et al. 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(2017) GSM2446127,GSM2446130,GSM2446133 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + hbg1 cMO - NF26 RNA-Seq NF26 embryo Gentsch GE et al. 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(2018) GSM2537314,GSM2537315,GSM2537316 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + hbg1 cMO - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537323,GSM2537324,GSM2537325 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + hbg1 cMO - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537323,GSM2537324,GSM2537325 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE +tbxt MO + tbxt.2 MO - NF26 RNA-Seq NF26 embryo Gentsch GE et al. (2018) GSM2537317,GSM2537318,GSM2537319 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE +tbxt MO + tbxt.2 MO - NF26 RNA-Seq NF26 embryo Gentsch GE et al. (2018) GSM2537317,GSM2537318,GSM2537319 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE +tbxt MO + tbxt.2 MO - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537326,GSM2537327,GSM2537328 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE +tbxt MO + tbxt.2 MO - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537326,GSM2537327,GSM2537328 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{-/+}, tbxt.2{-/+} - NF26 RNA-Seq NF26 embryo Gentsch GE et al. (2018) GSM2537332,GSM2537333,GSM2537334 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{-/+}, tbxt.2{-/+} - NF26 RNA-Seq NF26 embryo Gentsch GE et al. (2018) GSM2537332,GSM2537333,GSM2537334 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{-/+}, tbxt.2{-/+} - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537341,GSM2537342,GSM2537343 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{-/+}, tbxt.2{-/+} - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537341,GSM2537342,GSM2537343 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE - NF26 RNA-Seq NF26 embryo Gentsch GE et al. (2018) GSM2537311,GSM2537312,GSM2537313 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537320,GSM2537321,GSM2537322 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{+/+}, tbxt.2{+/+} - NF26 RNA-Seq NF26 embryo Gentsch GE et al. (2018) GSM2537329,GSM2537330,GSM2537331 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{+/+}, tbxt.2{+/+} - NF26 RNA-Seq NF26 embryo Gentsch GE et al. (2018) GSM2537329,GSM2537330,GSM2537331 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{+/+}, tbxt.2{+/+} - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537338,GSM2537339,GSM2537340 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 96655 George Gentsch Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t George Gentsch, George Gentsch, James Smith Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages. 29478923 54637 SRP101960 WE + tbxt{+/+}, tbxt.2{+/+} - NF34 RNA-Seq NF33/34 embryo Gentsch GE et al. (2018) GSM2537338,GSM2537339,GSM2537340 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 brain (male) - adult RNA-Seq adult brain Marin R et al. (2017) GSM2563124,GSM2563125 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 brain (female) - adult RNA-Seq adult brain Marin R et al. (2017) GSM2563122,GSM2563123 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 heart (female) - adult RNA-Seq adult heart Marin R et al. (2017) GSM2563126,GSM2563127 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 heart (male) - adult RNA-Seq adult heart Marin R et al. (2017) GSM2563128,GSM2563129 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 kidney (female) - adult RNA-Seq adult kidney Marin R et al. (2017) GSM2563130,GSM2563131 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 kidney (male) - adult RNA-Seq adult kidney Marin R et al. (2017) GSM2563132,GSM2563133 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 liver (female) - adult RNA-Seq adult liver Marin R et al. (2017) GSM2563134,GSM2563135 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 liver (male) - adult RNA-Seq adult liver Marin R et al. (2017) GSM2563136,GSM2563137 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 ovary - adult RNA-Seq adult ovary Marin R et al. (2017) GSM2563138,GSM2563139 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 97367 Diego Cortez BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female 0 56019 SRP102989 testis - adult RNA-Seq adult testis Marin R et al. (2017) GSM2563140,GSM2563141 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt 100434 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 dorsal embryo - NF10.5 miRNA-Seq NF10.5 dorsal Espiritu EB et al. (2018) GSM2683080 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt 100434 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 dorsal embryo + fry MO - NF10.5 miRNA-Seq NF10.5 dorsal Espiritu EB et al. (2018) GSM2683082 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt 100434 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 dorsal embryo + fry MO - NF10.5 miRNA-Seq NF10.5 dorsal Espiritu EB et al. (2018) GSM2683082 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt 100434 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 dorsal embryo + lhx1-AS - NF10.5 miRNA-Seq NF10.5 dorsal Espiritu EB et al. (2018) GSM2683081 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt 100434 Neil Hukriede Regulation of kidney field specification by transcriptional regulation of microRNAs The transcriptional events driving specification of the kidney field have been well characterized. However, it remains unknown how the initial field Neil Hukriede, Neil Hukriede, M Cirio miRNA Deep sequencing of 3 Xenopus laevis samples 30375416 55420 SRP110298 dorsal embryo + lhx1-AS - NF10.5 miRNA-Seq NF10.5 dorsal Espiritu EB et al. (2018) GSM2683081 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt 102047 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched tran 29158442 54309 SRP114372 endoderm - NF12 RNA-Seq NF12 endoderm Butler AM et al. (2018) GSM2722410,GSM2722411,GSM2722412 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/ laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Readme.txt 102047 Mary Lou King The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched tran 29158442 54309 SRP114372 primordial germ cell - NF12 RNA-Seq NF12 primordial germ cell Butler AM et al. (2018) GSM2722413,GSM2722414,GSM2722415 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/ laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF14 RNA-Seq NF14 embryo Plouhinec JL et al. (2017) GSM2758863,GSM2758864 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 chordal neural plate border - NF14 RNA-Seq NF14 chordal neural plate Plouhinec JL et al. (2017) GSM2758810,GSM2758842,GSM2758853,GSM2758857,GSM2758867 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 chordal neural plate border - NF12.5 RNA-Seq NF12.5 chordal neural plate Plouhinec JL et al. (2017) GSM2758818,GSM2758825,GSM2758833 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 anterior neural fold, preplacodal ectoderm - NF14 RNA-Seq NF14 anterior neural fold Plouhinec JL et al. (2017) GSM2758846,GSM2758852,GSM2758854,GSM2758859,GSM2758862 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 neural plate - NF14 RNA-Seq NF14 neural plate Plouhinec JL et al. (2017) GSM2758815,GSM2758816 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 pre-chordal neural plate - NF14 RNA-Seq NF14 pre-chordal neural p Plouhinec JL et al. (2017) GSM2758839,GSM2758845,GSM2758847 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 posterior non-neural ectoderm - NF14 RNA-Seq NF14 non-neur. ecto. Plouhinec JL et al. (2017) GSM2758844,GSM2758850,GSM2758851 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 neural plate border - NF14 RNA-Seq NF14 neural plate border Plouhinec JL et al. (2017) GSM2758813,GSM2758814,GSM2758883,GSM2758887 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 chordal neural plate - NF12.5 RNA-Seq NF12.5 chordal neural plate Plouhinec JL et al. (2017) GSM2758817,GSM2758824,GSM2758832 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 pre-chordal neural plate - NF12.5 RNA-Seq NF12.5 pre-chordal neural p Plouhinec JL et al. (2017) GSM2758821,GSM2758828,GSM2758836 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 pre-chordal neural plate border - NF14 RNA-Seq NF14 pre-chordal neural p Plouhinec JL et al. (2017) GSM2758809,GSM2758841,GSM2758849,GSM2758856,GSM2758865,GSM2758866 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 neural crest - NF17 RNA-Seq NF17 neural crest Plouhinec JL et al. (2017) GSM2758811,GSM2758812,GSM2758882,GSM2758884 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 pre-chordal neural plate border, preplacodal ectoderm - NF12.5 RNA-Seq NF12.5 pre-chordal neural p Plouhinec JL et al. (2017) GSM2758823,GSM2758830,GSM2758838 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF12.5 RNA-Seq NF12.5 embryo Plouhinec JL et al. (2017) GSM2758870,GSM2758877 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 lateral neural plate border - NF12.5 RNA-Seq NF12.5 neural plate border Plouhinec JL et al. (2017) GSM2758819,GSM2758826,GSM2758834 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 anterior non-neural ectoderm - NF14 RNA-Seq NF14 non-neur. ecto. Plouhinec JL et al. (2017) GSM2758843,GSM2758858,GSM2758861 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF12 RNA-Seq NF12 embryo Plouhinec JL et al. (2017) GSM2758869,GSM2758876 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 preplacodal ectoderm - NF17 RNA-Seq NF17 preplacodal ectoderm Plouhinec JL et al. (2017) GSM2758885,GSM2758886 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 pre-chordal neural plate border - NF12.5 RNA-Seq NF12.5 pre-chordal neural p Plouhinec JL et al. (2017) GSM2758822,GSM2758829,GSM2758831,GSM2758837 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF18-19 RNA-Seq NF18 embryo Plouhinec JL et al. (2017) GSM2758874,GSM2758881 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF11.5 RNA-Seq NF11.5 embryo Plouhinec JL et al. (2017) GSM2758868,GSM2758875 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF16-17 RNA-Seq NF16 embryo Plouhinec JL et al. (2017) GSM2758873,GSM2758880 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF13 RNA-Seq NF13 embryo Plouhinec JL et al. (2017) GSM2758871,GSM2758878 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 non-neural ectoderm - NF12.5 RNA-Seq NF12.5 non-neur. ecto. Plouhinec JL et al. (2017) GSM2758820,GSM2758827,GSM2758835 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 WE - NF14-15 RNA-Seq NF14 embryo Plouhinec JL et al. (2017) GSM2758872,GSM2758879 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103240 Anne-Helene Monsoro-Burq A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates. During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illu 29049289 54144 SRP116397 chordal neural plate - NF14 RNA-Seq NF14 chordal neural plate Plouhinec JL et al. (2017) GSM2758840,GSM2758848,GSM2758855,GSM2758860 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt 103526 Sai Linlin Next Generation Sequencing Facilitates Quantitative Analysis of testis Transcriptomes in Xenopus laevis Purpose: Circular RNAs (circRNAs) are implicated in multiple developmental anomalies. The goals of this study are to research whether circRNAs involve Sai Linlin Examing circRNAs of testes of X. laevis from 2 conditions including AZ-treated and control, each with 3 replicates, using Illumina HiSeq 4000 0 60260 SRP117033 testis - adult RNA-Seq adult testis GSM2773066,GSM2773067,GSM2773068 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Readme.txt 103526 Sai Linlin Next Generation Sequencing Facilitates Quantitative Analysis of testis Transcriptomes in Xenopus laevis Purpose: Circular RNAs (circRNAs) are implicated in multiple developmental anomalies. The goals of this study are to research whether circRNAs involve Sai Linlin Examing circRNAs of testes of X. laevis from 2 conditions including AZ-treated and control, each with 3 replicates, using Illumina HiSeq 4000 0 60260 SRP117033 testis + Atrazine - adult RNA-Seq adult testis GSM2773063,GSM2773064,GSM2773065 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Readme.txt 103526 Sai Linlin Next Generation Sequencing Facilitates Quantitative Analysis of testis Transcriptomes in Xenopus laevis Purpose: Circular RNAs (circRNAs) are implicated in multiple developmental anomalies. The goals of this study are to research whether circRNAs involve Sai Linlin Examing circRNAs of testes of X. laevis from 2 conditions including AZ-treated and control, each with 3 replicates, using Illumina HiSeq 4000 0 60260 SRP117033 testis + Atrazine - adult RNA-Seq adult testis GSM2773063,GSM2773064,GSM2773065 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Readme.txt 104848 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Il 29844480 54969 SRP119791 vegetal pole - NF1 RNA-Seq NF1 vegetal pole Sindelka R et al. (2018) GSM2808772,GSM2808777,GSM2808782 RNA-Seq/Embryonic Tissues/fertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt 104848 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Il 29844480 54969 SRP119791 animal pole - NF1 RNA-Seq NF1 animal pole Sindelka R et al. (2018) GSM2808768,GSM2808773,GSM2808778 RNA-Seq/Embryonic Tissues/fertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt 104848 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Il 29844480 54969 SRP119791 equatorial belt - NF1 RNA-Seq NF1 equatorial belt Sindelka R et al. (2018) GSM2808770,GSM2808775,GSM2808780 RNA-Seq/Embryonic Tissues/fertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt 104848 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Il 29844480 54969 SRP119791 animal hemisphere - NF1 RNA-Seq NF1 animal hemisphere Sindelka R et al. (2018) GSM2808769,GSM2808774,GSM2808779 RNA-Seq/Embryonic Tissues/fertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt 104848 Radek Šindelka RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding Radek Šindelka, Radek Sindelka, Pavel Abaffy RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Il 29844480 54969 SRP119791 vegetal hemisphere - NF1 RNA-Seq NF1 vegetal hemisphere Sindelka R et al. (2018) GSM2808771,GSM2808776,GSM2808781 RNA-Seq/Embryonic Tissues/fertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 dorsal embryo explant - NF12 RNA-Seq NF12 dorsal Ding Y et al. (2018) GSM2835931 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 dorsal embryo explant - NF12 RNA-Seq NF12 dorsal Ding Y et al. (2018) GSM2835931 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 ventral embryo explant - NF12 RNA-Seq NF12 ventral Ding Y et al. (2018) GSM2835932 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 ventral embryo explant - NF12 RNA-Seq NF12 ventral Ding Y et al. (2018) GSM2835932 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835917,GSM2835921,GSM2835923,GSM2835927 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835917,GSM2835921,GSM2835923,GSM2835927 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + tissue dissociation - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835918,GSM2835922,GSM2835924 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + tissue dissociation - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835918,GSM2835922,GSM2835924 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + tissue dissociation - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835918,GSM2835922,GSM2835924 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + bmp4 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835919 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + bmp4 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835919 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + bmp4 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835919 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + cer1 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835926 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + cer1 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835926 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + cer1 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835926 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant+ fgf8 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835928 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant+ fgf8 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835928 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant+ fgf8 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835928 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + wnt8a - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835925 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + wnt8a - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835925 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + wnt8a - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835925 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + wnt8a + nodal2 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835930 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + wnt8a + nodal2 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835930 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + wnt8a + nodal2 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835930 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + nodal2 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835929 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + nodal2 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835929 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + nodal2 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835929 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + chrd.1 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835920 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + chrd.1 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835920 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 106320 Edward De Robertis Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis 30209221 55302 SRP122914 animal cap explant + chrd.1 - NF12 RNA-Seq NF12 animal cap Ding Y et al. (2018) GSM2835920 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt 107424 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five bi 29709598 54855 SRP125755 WE + LiCl - NF11/11.5 RNA-Seq NF11 embryo Monteiro RS et al. (2018) GSM2866830,GSM2866831,GSM2866832,GSM2866833,GSM2866834 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Readme.txt 107424 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five bi 29709598 54855 SRP125755 WE + UV - NF11/11.5 RNA-Seq NF11 embryo Monteiro RS et al. (2018) GSM2866835,GSM2866836,GSM2866837,GSM2866838,GSM2866839 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Readme.txt 107424 Rita Monteiro Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen Rita Monteiro, Rita Monteiro, James Smith, George Gentsch Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five bi 29709598 54855 SRP125755 WE - NF11/11.5 RNA-Seq NF11 embryo Monteiro RS et al. (2018) GSM2866840,GSM2866841,GSM2866842,GSM2866843,GSM2866844 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Readme.txt 111171 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splic 30165493 55254 SRP133568 animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Angerilli A et al. (2018) GSM3024606 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt 111171 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splic 30165493 55254 SRP133568 animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Angerilli A et al. (2018) GSM3024606 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt 111171 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splic 30165493 55254 SRP133568 animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2018) GSM3024607 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt 111171 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splic 30165493 55254 SRP133568 animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2018) GSM3024607 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt 111171 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splic 30165493 55254 SRP133568 animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2018) GSM3024608 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt 111171 Pawel Smialowski The Xenopus animal cap transcriptome: building a mucociliary epithelium. Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used Pawel Smialowski, Alessandro Angerilli, Ralph Rupp Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splic 30165493 55254 SRP133568 animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2018) GSM3024608 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt 111454 Ye Jin RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes Ye Jin, Daniel Weinstein mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2 29530451 54672 SRP134011 animal cap - NF18 + pitx1 mRNA RNA-Seq NF17 animal cap Jin Y et al. (2018) GSM3031399,GSM3031401 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Readme.txt 111454 Ye Jin RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes Ye Jin, Daniel Weinstein mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2 29530451 54672 SRP134011 animal cap - NF18 RNA-Seq NF17 animal cap Jin Y et al. (2018) GSM3031400,GSM3031402 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Readme.txt 112249 Richard Harland Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway. Richard Harland, Rachel Kjolby Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos 31285353 56112 SRP136318 ets2 WE + ets2-FLAG - NF11.5 ChIP-Seq NF11.5 embryo Kjolby RAS et al. (2019) GSM3062917,GSM3062918 ChIP-Seq/Transcription Factor/Ets2 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Readme.txt 112249 Richard Harland Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway. Richard Harland, Rachel Kjolby Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos 31285353 56112 SRP136318 ets2 WE + ets2-FLAG - NF11.5 ChIP-Seq NF11.5 embryo Kjolby RAS et al. (2019) GSM3062917,GSM3062918 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Readme.txt 112249 Richard Harland Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway. Richard Harland, Rachel Kjolby Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos 31285353 56112 SRP136318 input WE + ets2-FLAG - NF11.5 ChIP-Seq NF11.5 embryo Kjolby RAS et al. (2019) GSM3062919,GSM3062920 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Readme.txt 112364 Chris Kintner RNAseq profiliing of Xenopus laevis animal caps expressing Xnr2 at st14 To determine if Xnr2 induces mesodermal genes expression in ectodermal tissues Chris Kintner, Yuan-Hung Chien We force the ectodermal tissues to express xnr2 by injecting xnr2 RNA at the 2-4cell stage. The animal caps were excised at st10, the blastula stage. 29738711 54874 SRP136530 animal cap + nodal2 - NF14 RNA-Seq NF14 animal cap Chien YH et al. (2018) GSM3068398,GSM3068399 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Readme.txt 112364 Chris Kintner RNAseq profiliing of Xenopus laevis animal caps expressing Xnr2 at st14 To determine if Xnr2 induces mesodermal genes expression in ectodermal tissues Chris Kintner, Yuan-Hung Chien We force the ectodermal tissues to express xnr2 by injecting xnr2 RNA at the 2-4cell stage. The animal caps were excised at st10, the blastula stage. 29738711 54874 SRP136530 animal cap + nodal2 - NF14 RNA-Seq NF14 animal cap Chien YH et al. (2018) GSM3068398,GSM3068399 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 + Retinoic acid + CHX - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082049,GSM3082050 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 + Retinoic acid + CHX - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082049,GSM3082050 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 + Retinoic acid + CHX - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082049,GSM3082050 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 + Retinoic acid - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082047,GSM3082048 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 + Retinoic acid - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082047,GSM3082048 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 + Retinoic acid - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082047,GSM3082048 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + vegt + nog + cyp26a1 + CHX - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082045,GSM3082046 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + vegt + nog + cyp26a1 + CHX - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082045,GSM3082046 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + vegt + nog + cyp26a1 + CHX - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082045,GSM3082046 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082043,GSM3082044 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 112718 Gabriela Salinas-Riester Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected 2 hours after RA addition at 29769220 54918 SRP137258 animal cap explant + nog + vegt + cyp26a1 - NF12.5 RNA-Seq NF12.5 animal cap Gere-Becker MB et al. (2018) GSM3082043,GSM3082044 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF8 MBT (NG Cap-C) Hi-C NF8 embryo Gentsch GE et al. (2019) GSM3099522,GSM3099523,GSM3099524 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + LDN193189 - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099588,GSM3099589,GSM3099590 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + LDN193189 - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099588,GSM3099589,GSM3099590 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + LDN193189 - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099582,GSM3099583,GSM3099584 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + LDN193189 - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099582,GSM3099583,GSM3099584 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099585,GSM3099586,GSM3099587 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099585,GSM3099586,GSM3099587 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + alpha-amanitin - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099534,GSM3099535,GSM3099536 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + alpha-amanitin - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099534,GSM3099535,GSM3099536 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE - NF11 ChIP-Seq NF11 embryo Gentsch GE et al. (2019) GSM3099456 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + alpha-amanitin - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099531,GSM3099532,GSM3099533 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + alpha-amanitin - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099531,GSM3099532,GSM3099533 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF8 MBT naked (DNase-Seq) DNase-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099520,GSM3099521 Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF8 MBT (DNase-Seq) DNase-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099516,GSM3099517 Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (DNase-Seq) DNase-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099518,GSM3099519 Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (DNase-Seq) DNase-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099518,GSM3099519 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (NG Cap-C) Hi-C NF8 embryo Gentsch GE et al. (2019) GSM3099525,GSM3099526,GSM3099527 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099600,GSM3099601,GSM3099602 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099600,GSM3099601,GSM3099602 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 H3K4me1 + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099496,GSM3099497 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 H3K4me1 + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099496,GSM3099497 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 H3K4me1 WE - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099494,GSM3099495 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Myod1 WE + myod1 - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099476,GSM3099477 ChIP-Seq/Transcription Factor/Myod1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Myod1 WE + myod1 - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099476,GSM3099477 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE + myod1 - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099480,GSM3099481 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE + myod1 - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099480,GSM3099481 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099492,GSM3099493 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099492,GSM3099493 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + ctnnb1 MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099552,GSM3099553,GSM3099554 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + ctnnb1 MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099552,GSM3099553,GSM3099554 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + ctnnb1 MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099546,GSM3099547,GSM3099548 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + ctnnb1 MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099546,GSM3099547,GSM3099548 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099612,GSM3099613,GSM3099614 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099612,GSM3099613,GSM3099614 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 sox3 WE + myod1 - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099478,GSM3099479 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 sox3 WE + myod1 - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099478,GSM3099479 ChIP-Seq/Transcription Factor/Sox3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Ctnnb1 WE - NF9 ChIP-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099486,GSM3099487 ChIP-Seq/Transcription Factor/beta Catenin tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Ctnnb1 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9 ChIP-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099488,GSM3099489 ChIP-Seq/Transcription Factor/beta Catenin tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Ctnnb1 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9 ChIP-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099488,GSM3099489 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Ctnnb1 WE - NF6 ChIP-Seq NF6 embryo Gentsch GE et al. (2019) GSM3099459 ChIP-Seq/Transcription Factor/beta Catenin tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Ctnnb1 WE - NF8 ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099460 ChIP-Seq/Transcription Factor/beta Catenin tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Ctnnb1 WE - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099461 ChIP-Seq/Transcription Factor/beta Catenin tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + alpha-amanitin - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099528,GSM3099529,GSM3099530 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + alpha-amanitin - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099528,GSM3099529,GSM3099530 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + SB431542 - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099579,GSM3099580,GSM3099581 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + SB431542 - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099579,GSM3099580,GSM3099581 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + SB431542 - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099573,GSM3099574,GSM3099575 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + SB431542 - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099573,GSM3099574,GSM3099575 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099576,GSM3099577,GSM3099578 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099576,GSM3099577,GSM3099578 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE - NF12 ChIP-Seq NF12 embryo Gentsch GE et al. (2019) GSM3099457 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE - NF13 ChIP-Seq NF13 embryo Gentsch GE et al. (2019) GSM3099458 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE - NF6 ChIP-Seq NF6 embryo Gentsch GE et al. (2019) GSM3099452 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE - NF7 ChIP-Seq NF7 embryo Gentsch GE et al. (2019) GSM3099453 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + DMSO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099597,GSM3099598,GSM3099599 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + DMSO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099597,GSM3099598,GSM3099599 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + DMSO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099591,GSM3099592,GSM3099593 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + DMSO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099591,GSM3099592,GSM3099593 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + DMSO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099594,GSM3099595,GSM3099596 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + DMSO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099594,GSM3099595,GSM3099596 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE - NF8 ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099454 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Pol II WE - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099455,GSM3099490,GSM3099491 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 phospho-smad1/5/9 WE - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099463,GSM3099464 ChIP-Seq/Transcription Factor/phospho-Smad1_5_9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 phospho-smad1/5/9 WE - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099462 ChIP-Seq/Transcription Factor/phospho-Smad1_5_9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Smad2/3 WE - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099466 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Smad2/3 WE - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099482,GSM3099483 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Smad2/3 WE - NF8 ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099465 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Smad2/3 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099484,GSM3099485 ChIP-Seq/Transcription Factor/Smad2_3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Smad2/3 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099484,GSM3099485 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 sox3 WE - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099468 ChIP-Seq/Transcription Factor/Sox3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 sox3 WE - NF12 ChIP-Seq NF12 embryo Gentsch GE et al. (2019) GSM3099469 ChIP-Seq/Transcription Factor/Sox3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Sox3 tail bud - NF20 ChIP-Seq NF20 tail bud Gentsch GE et al. (2019) GSM3099472 ChIP-Seq/Transcription Factor/Sox3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Sox3 head - NF20 ChIP-Seq NF20 head Gentsch GE et al. (2019) GSM3099470 ChIP-Seq/Transcription Factor/Sox3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Sox3 trunk - NF20 ChIP-Seq NF20 trunk Gentsch GE et al. (2019) GSM3099471 ChIP-Seq/Transcription Factor/Sox3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Sox3 WE - NF8 ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099467 ChIP-Seq/Transcription Factor/Sox3 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 Tbx6 WE - NF20 ChIP-Seq NF20 embryo Gentsch GE et al. (2019) GSM3099475 ChIP-Seq/Transcription Factor/Tbx6 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 VegT WE - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099474 ChIP-Seq/Transcription Factor/vegt tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 VegT WE - NF8 ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099473 ChIP-Seq/Transcription Factor/vegt tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099549,GSM3099550,GSM3099551 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099549,GSM3099550,GSM3099551 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF10 ChIP-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099505,GSM3099506,GSM3099507 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF11 ChIP-Seq NF11 embryo Gentsch GE et al. (2019) GSM3099508 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF12 ChIP-Seq NF12 embryo Gentsch GE et al. (2019) GSM3099509,GSM3099510 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF13 ChIP-Seq NF13 embryo Gentsch GE et al. (2019) GSM3099511 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF20 ChIP-Seq NF20 embryo Gentsch GE et al. (2019) GSM3099512 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input tail bud - NF20 ChIP-Seq NF20 tail bud Gentsch GE et al. (2019) GSM3099515 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input head - NF20 ChIP-Seq NF20 head Gentsch GE et al. (2019) GSM3099513 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input trunk - NF20 ChIP-Seq NF20 trunk Gentsch GE et al. (2019) GSM3099514 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF6 ChIP-Seq NF6 embryo Gentsch GE et al. (2019) GSM3099498 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF7 ChIP-Seq NF7 embryo Gentsch GE et al. (2019) GSM3099499 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF8 ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099500,GSM3099501 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF8 MBT ChIP-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099502,GSM3099503 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 input WE - NF9 ChIP-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099504 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099606,GSM3099607,GSM3099608 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099606,GSM3099607,GSM3099608 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099603,GSM3099604,GSM3099605 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099603,GSM3099604,GSM3099605 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099615,GSM3099616,GSM3099617 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099615,GSM3099616,GSM3099617 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099609,GSM3099610,GSM3099611 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099609,GSM3099610,GSM3099611 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + vegt MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099633,GSM3099634,GSM3099635 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + vegt MO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099633,GSM3099634,GSM3099635 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + vegt MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099627,GSM3099628,GSM3099629 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + vegt MO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099627,GSM3099628,GSM3099629 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + vegt MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099630,GSM3099631,GSM3099632 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + vegt MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099630,GSM3099631,GSM3099632 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099543,GSM3099544,GSM3099545 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099561,GSM3099562,GSM3099563 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099561,GSM3099562,GSM3099563 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099555,GSM3099556,GSM3099557 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099555,GSM3099556,GSM3099557 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099558,GSM3099559,GSM3099560 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099558,GSM3099559,GSM3099560 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099642,GSM3099643,GSM3099644 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099642,GSM3099643,GSM3099644 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099636,GSM3099637,GSM3099638 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099636,GSM3099637,GSM3099638 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099639,GSM3099640,GSM3099641 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE + hbg1 cMO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099639,GSM3099640,GSM3099641 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099537,GSM3099538,GSM3099539 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099540,GSM3099541,GSM3099542 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099570,GSM3099571,GSM3099572 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099564,GSM3099565,GSM3099566 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099567,GSM3099568,GSM3099569 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099624,GSM3099625,GSM3099626 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099618,GSM3099619,GSM3099620 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099621,GSM3099622,GSM3099623 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF10 RNA-Seq NF10 embryo Gentsch GE et al. (2019) GSM3099651,GSM3099652,GSM3099653 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF8 MBT RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3099645,GSM3099646,GSM3099647 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 113186 George Gentsch The role of maternal pioneer factors in predefining first zygotic responses to inductive signals Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel George Gentsch, George Gentsch, James Smith This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and R 31537794 56302 SRP140517 WE - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3099648,GSM3099649,GSM3099650 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt 115220 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos 30842454 55761 SRP149548 somite - NF22 RNA-Seq NF22 somite Li L et al. (2019) GSM3171642,GSM3171643,GSM3171644 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Readme.txt 115220 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos 30842454 55761 SRP149548 somite + etv6 MO - NF22 RNA-Seq NF22 somite Li L et al. (2019) GSM3171645,GSM3171646,GSM3171647 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Readme.txt 115220 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos 30842454 55761 SRP149548 somite + etv6 MO - NF22 RNA-Seq NF22 somite Li L et al. (2019) GSM3171645,GSM3171646,GSM3171647 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Readme.txt 115224 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries we 30842454 55761 SRP149552 input somite - NF22 ChIP-Seq NF22 somite Li L et al. (2019) GSM3171683,GSM3171684,GSM3171685 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Readme.txt 115224 Lei Li Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq] VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries we 30842454 55761 SRP149552 Etv6 somite - NF22 ChIP-Seq NF22 somite Li L et al. (2019) GSM3171680,GSM3171681,GSM3171682 ChIP-Seq/Transcription Factor/Etv6 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF24 0_mpw RNA-Seq NF24 embryo Abaffy P et al. (2019) GSM3245092,GSM3245093,GSM3245094 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF24 0_mpw RNA-Seq NF24 embryo Abaffy P et al. (2019) GSM3245092,GSM3245093,GSM3245094 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF24 30_mpw RNA-Seq NF24 embryo Abaffy P et al. (2019) GSM3245095,GSM3245096,GSM3245097 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF24 30_mpw RNA-Seq NF24 embryo Abaffy P et al. (2019) GSM3245095,GSM3245096,GSM3245097 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF25 60_mpw RNA-Seq NF25 embryo Abaffy P et al. (2019) GSM3245098,GSM3245099,GSM3245100 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF25 60_mpw RNA-Seq NF25 embryo Abaffy P et al. (2019) GSM3245098,GSM3245099,GSM3245100 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF26 90_mpw RNA-Seq NF26 embryo Abaffy P et al. (2019) GSM3245101,GSM3245102,GSM3245103 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116667 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing. Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate. 31694542 56449 SRP152312 WE + epidermis amputation - NF26 90_mpw RNA-Seq NF26 embryo Abaffy P et al. (2019) GSM3245101,GSM3245102,GSM3245103 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258297,GSM3258298 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258297,GSM3258298 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258297,GSM3258298 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258299,GSM3258300 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258299,GSM3258300 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258299,GSM3258300 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258301,GSM3258302 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258301,GSM3258302 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258301,GSM3258302 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258303,GSM3258304 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258303,GSM3258304 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258303,GSM3258304 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258305,GSM3258306 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258305,GSM3258306 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258305,GSM3258306 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258305,GSM3258306 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258307,GSM3258308 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258307,GSM3258308 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258307,GSM3258308 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258307,GSM3258308 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258309,GSM3258310 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258309,GSM3258310 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258309,GSM3258310 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258309,GSM3258310 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258311,GSM3258312 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258311,GSM3258312 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258311,GSM3258312 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + TRIM + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258311,GSM3258312 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258313,GSM3258314 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258313,GSM3258314 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258313,GSM3258314 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24 RNA-Seq NF24 epidermis Abaffy P et al. (2019) GSM3258313,GSM3258314 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258315,GSM3258316 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258315,GSM3258316 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258315,GSM3258316 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258315,GSM3258316 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258317,GSM3258318 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258317,GSM3258318 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258317,GSM3258318 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258317,GSM3258318 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258319,GSM3258320 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258319,GSM3258320 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258319,GSM3258320 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116678 Radek Šindelka Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO. We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate. 31694542 56449 SRP152311 Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25 RNA-Seq NF25 epidermis Abaffy P et al. (2019) GSM3258319,GSM3258320 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt 116819 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and 30390632 55440 SRP152872 intercanthal region - NF40 RNA-Seq NF40 Wahl SE et al. (2018) GSM3262255,GSM3262256,GSM3262257 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Readme.txt 116819 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and 30390632 55440 SRP152872 intercanthal region + BMS453 - NF40 RNA-Seq NF40 Wahl SE et al. (2018) GSM3262258,GSM3262259,GSM3262260 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Readme.txt 116819 Stacey Wahl Transcriptome analysis of wild type and RAR deficient frog faces during development We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453. Stacey Wahl, Stephen Turner, Amanda Dickinson Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and 30390632 55440 SRP152872 intercanthal region + BMS453 - NF40 RNA-Seq NF40 Wahl SE et al. (2018) GSM3262258,GSM3262259,GSM3262260 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Readme.txt 117754 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 WE - NF32 RNA-Seq NF32 embryo Kim Y et al. (2018) GSM3308290,GSM3308291 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt 117754 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 WE + kdm5c MO - NF32 RNA-Seq NF32 embryo Kim Y et al. (2018) GSM3308292,GSM3308293 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt 117754 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 WE + kdm5c MO - NF32 RNA-Seq NF32 embryo Kim Y et al. (2018) GSM3308292,GSM3308293 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt 117754 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 WE + kdm3a MO - NF32 RNA-Seq NF32 embryo Kim Y et al. (2018) GSM3308294,GSM3308295 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt 117754 Taejoon Kwon Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee Collect mRNA from whole embryos; two biological replicates were analyzed 30522514 55525 SRP155436 WE + kdm3a MO - NF32 RNA-Seq NF32 embryo Kim Y et al. (2018) GSM3308294,GSM3308295 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal blastomere - NF4 RNA-Seq NF4 animal blastomere Paraiso KD et al. (2019) GSM3317414,GSM3317415,GSM3317416 RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal blastomere - NF4 RNA-Seq NF4 vegetal blastomere Paraiso KD et al. (2019) GSM3317417,GSM3317418,GSM3317419 RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 WE - NF4 RNA-Seq NF4 embryo Paraiso KD et al. (2019) GSM3317420,GSM3317421,GSM3317422 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317423,GSM3317431 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317425,GSM3317433 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317425,GSM3317433 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317424,GSM3317432 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317424,GSM3317432 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317426,GSM3317434 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317426,GSM3317434 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317427,GSM3317435 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317427,GSM3317435 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + otx1 + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317428,GSM3317436 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + otx1 + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317428,GSM3317436 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - otx1 + vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317429,GSM3317437 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - otx1 + vegt + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317429,GSM3317437 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + otx1 + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317430,GSM3317438 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 animal cap - vegt + otx1 + animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Paraiso KD et al. (2019) GSM3317430,GSM3317438 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317439,GSM3317443 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317439,GSM3317443 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegt MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317440,GSM3317444 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegt MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317440,GSM3317444 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegt MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317440,GSM3317444 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - otx1 MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317441,GSM3317445 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - otx1 MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317441,GSM3317445 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - otx1 MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317441,GSM3317445 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegt MO + otx1 MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317442,GSM3317446 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegt MO + otx1 MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317442,GSM3317446 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 vegetal yolk mass - vegt MO + otx1 MO + vegetal yolk mass explant - NF10.5 RNA-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3317442,GSM3317446 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 H3K4me1 vegetal yolk mass - NF10.5 ChIP-Seq NF10.5 vegetal yolk mass Paraiso KD et al. (2019) GSM3638163,GSM3638164 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 VegT WE - NF8 ChIP-Seq NF8 embryo Paraiso KD et al. (2019) GSM3317447,GSM3317448 ChIP-Seq/Transcription Factor/VegT tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Readme.txt 118024 Kitt Paraiso Endodermal maternal transcription factors establish super enhancers during zygotic genome activation We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial Kitt Paraiso, Kitt Paraiso, Ken Cho Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embry 31167141 55999 SRP156130 Otx1 WE - NF8 ChIP-Seq NF8 embryo Paraiso KD et al. (2019) GSM3317449,GSM3317450 ChIP-Seq/Transcription Factor/Otx1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + hindlimb amputation - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330455,GSM3330456,GSM3330457 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + hindlimb amputation - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330455,GSM3330456,GSM3330457 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + hindlimb amputation + sham - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330437,GSM3330438,GSM3330439 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + hindlimb amputation + sham - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330437,GSM3330438,GSM3330439 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + hindlimb amputation + sham - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330437,GSM3330438,GSM3330439 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + progesterone + hindlimb amputation - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330446,GSM3330447,GSM3330448 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + progesterone + hindlimb amputation - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330446,GSM3330447,GSM3330448 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + progesterone + hindlimb amputation - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330446,GSM3330447,GSM3330448 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 blastema + progesterone + hindlimb amputation - adult RNA-Seq adult blastema Herrera-Rincon C et al. (2018) GSM3330446,GSM3330447,GSM3330448 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + hindlimb amputation + sham - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330440,GSM3330441,GSM3330442 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + hindlimb amputation + sham - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330440,GSM3330441,GSM3330442 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + hindlimb amputation + sham - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330440,GSM3330441,GSM3330442 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + hindlimb amputation - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330458,GSM3330459,GSM3330460 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + hindlimb amputation - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330458,GSM3330459,GSM3330460 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + hindlimb amputation - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330458,GSM3330459,GSM3330460 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + progesterone + hindlimb amputation - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330449,GSM3330450,GSM3330451 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + progesterone + hindlimb amputation - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330449,GSM3330450,GSM3330451 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + progesterone + hindlimb amputation - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330449,GSM3330450,GSM3330451 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 brain + progesterone + hindlimb amputation - adult RNA-Seq adult brain Herrera-Rincon C et al. (2018) GSM3330449,GSM3330450,GSM3330451 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + hindlimb amputation - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330461,GSM3330462,GSM3330463 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + hindlimb amputation - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330461,GSM3330462,GSM3330463 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + hindlimb amputation - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330461,GSM3330462,GSM3330463 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + hindlimb amputation + sham - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330443,GSM3330444,GSM3330445 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + hindlimb amputation + sham - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330443,GSM3330444,GSM3330445 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + hindlimb amputation + sham - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330443,GSM3330444,GSM3330445 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + progesterone + hindlimb amputation - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330452,GSM3330453,GSM3330454 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + progesterone + hindlimb amputation - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330452,GSM3330453,GSM3330454 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + progesterone + hindlimb amputation - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330452,GSM3330453,GSM3330454 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 118454 Christopher Martyniuk Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and 30404012 55432 SRP157614 regenerating hindlimb + progesterone + hindlimb amputation - adult RNA-Seq adult regenerating hindlim Herrera-Rincon C et al. (2018) GSM3330452,GSM3330453,GSM3330454 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + AGN193109 - NF10.5 (Batch 1) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358737,GSM3358739,GSM3358741,GSM3358743 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + AGN193109 - NF10.5 (Batch 1) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358737,GSM3358739,GSM3358741,GSM3358743 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + TTNPB - NF10.5 (Batch 1) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358745,GSM3358747,GSM3358749,GSM3358751 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + TTNPB - NF10.5 (Batch 1) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358745,GSM3358747,GSM3358749,GSM3358751 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WE + EtOH - NF10.5 (Batch 1) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358753,GSM3358755,GSM3358757,GSM3358759 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WE + EtOH - NF10.5 (Batch 1) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358753,GSM3358755,GSM3358757,GSM3358759 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + AGN193109 - NF10.5 (Batch 2) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358738,GSM3358740,GSM3358742,GSM3358744 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + AGN193109 - NF10.5 (Batch 2) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358738,GSM3358740,GSM3358742,GSM3358744 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + TTNPB - NF10.5 (Batch 2) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358746,GSM3358748,GSM3358750,GSM3358752 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + TTNPB - NF10.5 (Batch 2) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358746,GSM3358748,GSM3358750,GSM3358752 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + EtOH - NF10.5 (Batch 2) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358754,GSM3358756,GSM3358758,GSM3358760 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119124 Toshi Shioda RARγ is required for mesodermal gene expression prior to gastrulation The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109 30111657 55309 SRP159000 WT + EtOH - NF10.5 (Batch 2) RNA-Seq NF10.5 embryo Janesick A et al. (2018) GSM3358754,GSM3358756,GSM3358758,GSM3358760 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381791,GSM3381792 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381791,GSM3381792 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381791,GSM3381792 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + E. coli UTI89 - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381793,GSM3381794 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + E. coli UTI89 - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381793,GSM3381794 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + E. coli UTI89 - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381793,GSM3381794 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + brain ablation - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381795,GSM3381796 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + brain ablation - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381795,GSM3381796 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + brain ablation - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381795,GSM3381796 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + brain ablation + E. coli UTI89 - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381797,GSM3381798 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + brain ablation + E. coli UTI89 - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381797,GSM3381798 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 119729 Christopher Martyniuk An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity Over the past few years, interest in the field of neuroimmunology has expanded dramatically. While recent data and hypotheses suggest immunity as the Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected). 32047653 56679 SRP160998 WE + brain ablation + E. coli UTI89 - NF48 RNA-Seq NF48 embryo Herrera-Rincon C et al. (2020) GSM3381797,GSM3381798 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE - NF8 RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3473720 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE - NF10.25 RNA-Seq NF10.25 embryo Gentsch GE et al. (2019) GSM3473721 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 Input WE - NF10.25 RNA-Seq NF10.25 embryo Gentsch GE et al. (2019) GSM3473723 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 Input WE - NF8 RNA-Seq NF8 embryo Gentsch GE et al. (2019) GSM3473722 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF10.25 RNA-Seq NF10.25 embryo Gentsch GE et al. (2019) GSM3473748,GSM3473749,GSM3473750,GSM3473751 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF10.25 RNA-Seq NF10.25 embryo Gentsch GE et al. (2019) GSM3473748,GSM3473749,GSM3473750,GSM3473751 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF11 RNA-Seq NF11 embryo Gentsch GE et al. (2019) GSM3473752,GSM3473753,GSM3473754,GSM3473755 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF11 RNA-Seq NF11 embryo Gentsch GE et al. (2019) GSM3473752,GSM3473753,GSM3473754,GSM3473755 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF12 RNA-Seq NF12 embryo Gentsch GE et al. (2019) GSM3473756,GSM3473757,GSM3473758,GSM3473759 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF12 RNA-Seq NF12 embryo Gentsch GE et al. (2019) GSM3473756,GSM3473757,GSM3473758,GSM3473759 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473742,GSM3473743,GSM3473744 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473742,GSM3473743,GSM3473744 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + SB431542 + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473745,GSM3473746,GSM3473747 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + SB431542 + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473745,GSM3473746,GSM3473747 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473739,GSM3473740,GSM3473741 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473739,GSM3473740,GSM3473741 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WT + hbg1 cMO - NF12 RNA-Seq NF12 embryo Gentsch GE et al. (2019) GSM3473768,GSM3473769,GSM3473770,GSM3473771 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WT + hbg1 cMO - NF12 RNA-Seq NF12 embryo Gentsch GE et al. (2019) GSM3473768,GSM3473769,GSM3473770,GSM3473771 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WT + hbg1 cMO - NF11 RNA-Seq NF11 embryo Gentsch GE et al. (2019) GSM3473764,GSM3473765,GSM3473766,GSM3473767 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WT + hbg1 cMO - NF11 RNA-Seq NF11 embryo Gentsch GE et al. (2019) GSM3473764,GSM3473765,GSM3473766,GSM3473767 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WT + hbg1 cMO - NF10.25 RNA-Seq NF10.25 embryo Gentsch GE et al. (2019) GSM3473760,GSM3473761,GSM3473762,GSM3473763 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WT + hbg1 cMO - NF10.25 RNA-Seq NF10.25 embryo Gentsch GE et al. (2019) GSM3473760,GSM3473761,GSM3473762,GSM3473763 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473724,GSM3473725,GSM3473726 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473724,GSM3473725,GSM3473726 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473736,GSM3473737,GSM3473738 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473727,GSM3473728,GSM3473729 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473727,GSM3473728,GSM3473729 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473727,GSM3473728,GSM3473729 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473730,GSM3473731,GSM3473732 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473730,GSM3473731,GSM3473732 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + LDN193189 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473730,GSM3473731,GSM3473732 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + LDN193189 + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473733,GSM3473734,GSM3473735 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + LDN193189 + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473733,GSM3473734,GSM3473735 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 122551 George Gentsch The Spatio-Temporal Control of Zygotic Genome Activation One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be George Gentsch, George Gentsch, James Smith This study generated four 4sU-Seq samples and 48 RNA-Seq samples. 31229896 56693 SRP168643 WE + ctnnb1 MO + LDN193189 + SB431542 - NF9 RNA-Seq NF9 embryo Gentsch GE et al. (2019) GSM3473733,GSM3473734,GSM3473735 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt 124168 Cei Abreu-Goodger Axonal precursor miRNAs hitchhike on endosomes and locally regulate the development of neural circuits Various species of non-coding RNAs (ncRNAs) are enriched in subcellular compartments but the mechanisms orchestrating their localization and their loc Cei Abreu-Goodger, Eloina Corradi, Irene Dalla Costa, Antoneta Gavoci, Archana Iyer, Michela Roccuzzo, Tegan Otto, Eleonora Oliani, Simone Bridi, Stephanie Strohbuecker, Gabriela Santos-Rodriguez, Donatella Valdembri, Guido Serini, Marie-Laure Baudet Total RNA profile were obtained from isolated retinal ganglion cell axons from Xenopus laevis retinal eye cultures using RNA-sequencing 32073171 57123 SRP174009 retinal ganglion cell axon - eye explant - NF35/36-39 RNA-Seq NF35/36 retinal ganglion cel Corradi E et al. (2020) GSM3523319 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Readme.txt 124168 Cei Abreu-Goodger Axonal precursor miRNAs hitchhike on endosomes and locally regulate the development of neural circuits Various species of non-coding RNAs (ncRNAs) are enriched in subcellular compartments but the mechanisms orchestrating their localization and their loc Cei Abreu-Goodger, Eloina Corradi, Irene Dalla Costa, Antoneta Gavoci, Archana Iyer, Michela Roccuzzo, Tegan Otto, Eleonora Oliani, Simone Bridi, Stephanie Strohbuecker, Gabriela Santos-Rodriguez, Donatella Valdembri, Guido Serini, Marie-Laure Baudet Total RNA profile were obtained from isolated retinal ganglion cell axons from Xenopus laevis retinal eye cultures using RNA-sequencing 32073171 57123 SRP174009 retinal ganglion cell axon - eye explant - NF35/36-39 RNA-Seq NF35/36 retinal ganglion cel Corradi E et al. (2020) GSM3523319 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 WE - NF10.5 RNA-Seq NF10.5 embryo Sosa EA et al. (2019) GSM3536579,GSM3536584,GSM3536589 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 WE - NF12 RNA-Seq NF12 embryo Sosa EA et al. (2019) GSM3536594,GSM3536599,GSM3536604 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 dorsal explant - NF12 RNA-Seq NF12 dorsal Sosa EA et al. (2019) GSM3536597,GSM3536602,GSM3536607 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 dorsal explant - NF12 RNA-Seq NF12 dorsal Sosa EA et al. (2019) GSM3536597,GSM3536602,GSM3536607 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 dorsal explant - NF10.5 RNA-Seq NF10.5 dorsal Sosa EA et al. (2019) GSM3536582,GSM3536587,GSM3536592 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 dorsal explant - NF10.5 RNA-Seq NF10.5 dorsal Sosa EA et al. (2019) GSM3536582,GSM3536587,GSM3536592 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 ventral explant - NF10.5 RNA-Seq NF10.5 ventral Sosa EA et al. (2019) GSM3536583,GSM3536588,GSM3536593 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 ventral explant - NF10.5 RNA-Seq NF10.5 ventral Sosa EA et al. (2019) GSM3536583,GSM3536588,GSM3536593 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 ventral explant - NF12 RNA-Seq NF12 ventral Sosa EA et al. (2019) GSM3536598,GSM3536603,GSM3536608 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 ventral explant - NF12 RNA-Seq NF12 ventral Sosa EA et al. (2019) GSM3536598,GSM3536603,GSM3536608 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 left side explant - NF12 RNA-Seq NF12 Sosa EA et al. (2019) GSM3536595,GSM3536600,GSM3536605 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 left side explant - NF12 RNA-Seq NF12 Sosa EA et al. (2019) GSM3536595,GSM3536600,GSM3536605 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 left side explant - NF10.5 RNA-Seq NF10.5 Sosa EA et al. (2019) GSM3536580,GSM3536585,GSM3536590 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 left side explant - NF10.5 RNA-Seq NF10.5 Sosa EA et al. (2019) GSM3536580,GSM3536585,GSM3536590 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 right side explant - NF10.5 RNA-Seq NF10.5 Sosa EA et al. (2019) GSM3536581,GSM3536586,GSM3536591 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 right side explant - NF10.5 RNA-Seq NF10.5 Sosa EA et al. (2019) GSM3536581,GSM3536586,GSM3536591 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 right side explant - NF12 RNA-Seq NF12 Sosa EA et al. (2019) GSM3536596,GSM3536601,GSM3536606 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 124563 Edward De Robertis Transcriptome analysis of regeneration in Xenopus laevis twin embryos Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis 31250914 56074 SRP175030 right side explant - NF12 RNA-Seq NF12 Sosa EA et al. (2019) GSM3536596,GSM3536601,GSM3536606 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K27me3 sperm - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587310 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K27me3 sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587303,GSM3587304,GSM3587305 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K27me3 sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587303,GSM3587304,GSM3587305 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K27me3 sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587306,GSM3587307,GSM3587308 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K27me3 sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587306,GSM3587307,GSM3587308 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587297,GSM3587298,GSM3587299 ChIP-Seq/Epigenetic/input laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587297,GSM3587298,GSM3587299 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587300,GSM3587301,GSM3587302 ChIP-Seq/Epigenetic/input laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587300,GSM3587301,GSM3587302 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K4me3 sperm - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587309 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K4me3 sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587291,GSM3587292,GSM3587293 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K4me3 sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587291,GSM3587292,GSM3587293 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K4me3 sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587294,GSM3587295,GSM3587296 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K4me3 sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587294,GSM3587295,GSM3587296 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K4me3 WE - NF7 ChIP-Seq NF7 embryo Oikawa M et al. (2020) GSM3671368,GSM3671369 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587285,GSM3587286,GSM3587287 ChIP-Seq/Epigenetic/input laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract + Gmnn - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587285,GSM3587286,GSM3587287 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587288,GSM3587289,GSM3587290 ChIP-Seq/Epigenetic/input laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm + egg extract - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587288,GSM3587289,GSM3587290 Manipulations/Protein laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input WE - NF7 ChIP-Seq NF7 embryo Oikawa M et al. (2020) GSM3671366,GSM3671367 ChIP-Seq/Epigenetic/input laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 input sperm - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587279,GSM3587280 ChIP-Seq/Epigenetic/input laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K27me3 sperm - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587283,GSM3587284 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 125982 Angela Simeone Epigenetic homogeneity underlies sperm programming for embryonic transcription Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien 30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, a 0 57326 SRP183098 H3K4me3 sperm - adult frog ChIP-Seq adult spermatozoon Oikawa M et al. (2020) GSM3587281,GSM3587282 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589903,GSM3589918,GSM3589933 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589903,GSM3589918,GSM3589933 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589902,GSM3589917,GSM3589932 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589902,GSM3589917,GSM3589932 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589908,GSM3589923,GSM3589938 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589908,GSM3589923,GSM3589938 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589913,GSM3589928,GSM3589943 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589913,GSM3589928,GSM3589943 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589907,GSM3589922,GSM3589937 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589907,GSM3589922,GSM3589937 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589912,GSM3589927,GSM3589942 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589912,GSM3589927,GSM3589942 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589905,GSM3589920,GSM3589935 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589905,GSM3589920,GSM3589935 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589910,GSM3589925,GSM3589940 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589910,GSM3589925,GSM3589940 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589915,GSM3589930,GSM3589945 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + erfe MO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589915,GSM3589930,GSM3589945 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589904,GSM3589919,GSM3589934 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589904,GSM3589919,GSM3589934 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589909,GSM3589924,GSM3589939 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589909,GSM3589924,GSM3589939 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589914,GSM3589929,GSM3589944 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE + hbg1 cMO - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589914,GSM3589929,GSM3589944 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE - NF35/36 RNA-Seq NF35/36 embryo Melchert J et al. (2020) GSM3589901,GSM3589916,GSM3589931 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE - NF37/38 RNA-Seq NF37/38 embryo Melchert J et al. (2020) GSM3589906,GSM3589921,GSM3589936 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126058 Gabriela Salinas Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages. RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/3 31846624 56559 SRP183483 WE - NF41 RNA-Seq NF41 embryo Melchert J et al. (2020) GSM3589911,GSM3589926,GSM3589941 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + bap1 MO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609529,GSM3609532,GSM3609535 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + bap1 MO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609529,GSM3609532,GSM3609535 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + bap1 MO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609529,GSM3609532,GSM3609535 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + bap1 cMO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609528,GSM3609531,GSM3609534 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + bap1 cMO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609528,GSM3609531,GSM3609534 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + bap1 cMO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609528,GSM3609531,GSM3609534 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + hdac4 MO + bap1 MO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609530,GSM3609533,GSM3609536 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + hdac4 MO + bap1 MO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609530,GSM3609533,GSM3609536 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126597 Michael Durante Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nex 31555735 56327 SRP185947 WE + hdac4 MO + bap1 MO - NF12 RNA-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609530,GSM3609533,GSM3609536 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H2AK119ub WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609549,GSM3609550 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H2AK119ub WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609549,GSM3609550 ChIP-Seq/Epigenetic/H2AK119ub laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H2AK119ub WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609549,GSM3609550 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H2AK119ub WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609551,GSM3609552 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H2AK119ub WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609551,GSM3609552 ChIP-Seq/Epigenetic/H2AK119ub laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H2AK119ub WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609551,GSM3609552 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27AC WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609537,GSM3609538 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27AC WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609537,GSM3609538 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27AC WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609537,GSM3609538 ChIP-Seq/Epigenetic/H3K27ac laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27AC WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609539,GSM3609540 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27AC WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609539,GSM3609540 ChIP-Seq/Epigenetic/H3K27ac laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27AC WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609539,GSM3609540 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 input WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609553,GSM3609554 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 input WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609555,GSM3609556 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27me3 WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609545,GSM3609546 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27me3 WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609545,GSM3609546 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27me3 WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609545,GSM3609546 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27me3 WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609547,GSM3609548 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27me3 WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609547,GSM3609548 ChIP-Seq/Epigenetic/H3K27me3 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K27me3 WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609547,GSM3609548 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K4me3 WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609541,GSM3609542 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K4me3 WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609541,GSM3609542 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K4me3 WE + bap1 MO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609541,GSM3609542 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K4me3 WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609543,GSM3609544 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K4me3 WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609543,GSM3609544 ChIP-Seq/Epigenetic/H3K4me3 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 126598 Michael Durante Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq] We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting and activating hi Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks. 31555735 56327 SRP185948 H3K4me3 WE + bap1 cMO - NF12 ChIP-Seq NF12 embryo Kuznetsov JN et al. (2019) GSM3609543,GSM3609544 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt 127777 Rui Zhang Whole transcriptome bisufilte sequencing for multiple species [Xenopus laevis] We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species. Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu RNA BS-seq of mRNA for multiple species. 35513466 60263 WE - NF1 Bisulfite-Seq NF1 embryo Liu J et al. (2022) GSM3638649,GSM3638650 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Readme.txt 127777 Rui Zhang Whole transcriptome bisufilte sequencing for multiple species [Xenopus laevis] We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species. Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu RNA BS-seq of mRNA for multiple species. 35513466 60263 WE - NF25 Bisulfite-Seq NF25 embryo Liu J et al. (2022) GSM3638651,GSM3638652 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Readme.txt 127778 Rui Zhang Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis] We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species. Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu RNA BS-seq of mRNA for multiple species. 35513466 60263 WE - NF1 5ng Bisulfite-Seq NF1 embryo Liu J et al. (2022) GSM3638655 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt 127778 Rui Zhang Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis] We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species. Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu RNA BS-seq of mRNA for multiple species. 35513466 60263 WE - NF1 10ng Bisulfite-Seq NF1 embryo Liu J et al. (2022) GSM3638656 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt 127778 Rui Zhang Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis] We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species. Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu RNA BS-seq of mRNA for multiple species. 35513466 60263 WE - NF1 20ng Bisulfite-Seq NF1 embryo Liu J et al. (2022) GSM3638657 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt 127778 Rui Zhang Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis] We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species. Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu RNA BS-seq of mRNA for multiple species. 35513466 60263 WE - NF1 100ng Bisulfite-Seq NF1 embryo Liu J et al. (2022) GSM3638653,GSM3638654 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head - NF45 RNA-Seq NF45 head Pinet K et al. (2019) GSM3684785,GSM3684786,GSM3684787 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head - NF45 RNA-Seq NF45 head Pinet K et al. (2019) GSM3684785,GSM3684786,GSM3684787 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head - NF47 RNA-Seq NF47 head Pinet K et al. (2019) GSM3684788,GSM3684789,GSM3684790 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head - NF47 RNA-Seq NF47 head Pinet K et al. (2019) GSM3684788,GSM3684789,GSM3684790 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head + Thioridazine - NF45 RNA-Seq NF45 head Pinet K et al. (2019) GSM3684791,GSM3684792,GSM3684793 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head + Thioridazine - NF45 RNA-Seq NF45 head Pinet K et al. (2019) GSM3684791,GSM3684792,GSM3684793 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head + Thioridazine - NF45 RNA-Seq NF45 head Pinet K et al. (2019) GSM3684791,GSM3684792,GSM3684793 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head + Thioridazine - NF47 RNA-Seq NF47 head Pinet K et al. (2019) GSM3684794,GSM3684795,GSM3684796 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head + Thioridazine - NF47 RNA-Seq NF47 head Pinet K et al. (2019) GSM3684794,GSM3684795,GSM3684796 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 128772 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities. We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47. Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF s 31253636 56072 SRP189302 head + Thioridazine - NF47 RNA-Seq NF47 head Pinet K et al. (2019) GSM3684794,GSM3684795,GSM3684796 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain - NF45 RNA-Seq NF45 brain Pinet K et al. (2019) GSM3703269,GSM3703270,GSM3703271 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain - NF45 RNA-Seq NF45 brain Pinet K et al. (2019) GSM3703269,GSM3703270,GSM3703271 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain - NF47 RNA-Seq NF47 brain Pinet K et al. (2019) GSM3703272,GSM3703273,GSM3703274 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain - NF47 RNA-Seq NF47 brain Pinet K et al. (2019) GSM3703272,GSM3703273,GSM3703274 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain + Thioridazine - NF45 RNA-Seq NF45 brain Pinet K et al. (2019) GSM3703275,GSM3703276,GSM3703277 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain + Thioridazine - NF45 RNA-Seq NF45 brain Pinet K et al. (2019) GSM3703275,GSM3703276,GSM3703277 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain + Thioridazine - NF45 RNA-Seq NF45 brain Pinet K et al. (2019) GSM3703275,GSM3703276,GSM3703277 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain + Thioridazine - NF47 RNA-Seq NF47 brain Pinet K et al. (2019) GSM3703278,GSM3703279,GSM3703280 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain + Thioridazine - NF47 RNA-Seq NF47 brain Pinet K et al. (2019) GSM3703278,GSM3703279,GSM3703280 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 129234 Kelly McLaughlin Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities. Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag Kelly McLaughlin, Kaylinnette Pinet We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 4 31253636 56072 SRP190205 brain + Thioridazine - NF47 RNA-Seq NF47 brain Pinet K et al. (2019) GSM3703278,GSM3703279,GSM3703280 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt 130079 Emil Karaulanov Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo 31566562 56334 SRP193098 WE + hbg1 cMO - NF23 RNA-Seq NF23 embryo Han D et al. (2019) GSM3731560,GSM3731561,GSM3731562 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt 130079 Emil Karaulanov Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo 31566562 56334 SRP193098 WE + hbg1 cMO - NF23 RNA-Seq NF23 embryo Han D et al. (2019) GSM3731560,GSM3731561,GSM3731562 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt 130079 Emil Karaulanov Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo 31566562 56334 SRP193098 WE + hbg1 cMO - NF23 RNA-Seq NF23 embryo Han D et al. (2019) GSM3731560,GSM3731561,GSM3731562 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt 130079 Emil Karaulanov Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo 31566562 56334 SRP193098 WE + neil2 MO - NF23 RNA-Seq NF23 embryo Han D et al. (2019) GSM3731563,GSM3731564,GSM3731565 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt 130079 Emil Karaulanov Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo 31566562 56334 SRP193098 WE + neil2 MO - NF23 RNA-Seq NF23 embryo Han D et al. (2019) GSM3731563,GSM3731564,GSM3731565 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt 130079 Emil Karaulanov Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo 31566562 56334 SRP193098 WE + neil2 MO - NF23 RNA-Seq NF23 embryo Han D et al. (2019) GSM3731563,GSM3731564,GSM3731565 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Haas M et al. (2019) GSM3738794,GSM3738800,GSM3738806 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Haas M et al. (2019) GSM3738794,GSM3738800,GSM3738806 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF10.5 RNA-Seq NF10.5 animal cap Haas M et al. (2019) GSM3738797,GSM3738803,GSM3738809 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF10.5 RNA-Seq NF10.5 animal cap Haas M et al. (2019) GSM3738797,GSM3738803,GSM3738809 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF10.5 RNA-Seq NF10.5 animal cap Haas M et al. (2019) GSM3738797,GSM3738803,GSM3738809 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF19 RNA-Seq NF19 animal cap Haas M et al. (2019) GSM3738795,GSM3738807 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF19 RNA-Seq NF19 animal cap Haas M et al. (2019) GSM3738795,GSM3738807 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF19 RNA-Seq NF19 animal cap Haas M et al. (2019) GSM3738798,GSM3738810 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF19 RNA-Seq NF19 animal cap Haas M et al. (2019) GSM3738798,GSM3738810 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF19 RNA-Seq NF19 animal cap Haas M et al. (2019) GSM3738798,GSM3738810 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF25 RNA-Seq NF25 animal cap Haas M et al. (2019) GSM3738796,GSM3738808 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF25 RNA-Seq NF25 animal cap Haas M et al. (2019) GSM3738796,GSM3738808 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF25 RNA-Seq NF25 animal cap Haas M et al. (2019) GSM3738799,GSM3738811 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF25 RNA-Seq NF25 animal cap Haas M et al. (2019) GSM3738799,GSM3738811 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF25 RNA-Seq NF25 animal cap Haas M et al. (2019) GSM3738799,GSM3738811 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF16 RNA-Seq NF16 animal cap Haas M et al. (2019) GSM3738804 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF16 RNA-Seq NF16 animal cap Haas M et al. (2019) GSM3738804 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF16 RNA-Seq NF16 animal cap Haas M et al. (2019) GSM3738804 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF16 RNA-Seq NF16 animal cap Haas M et al. (2019) GSM3738801 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF16 RNA-Seq NF16 animal cap Haas M et al. (2019) GSM3738801 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF24 RNA-Seq NF24 animal cap Haas M et al. (2019) GSM3738802 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant - NF24 RNA-Seq NF24 animal cap Haas M et al. (2019) GSM3738802 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF24 RNA-Seq NF24 animal cap Haas M et al. (2019) GSM3738805 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF24 RNA-Seq NF24 animal cap Haas M et al. (2019) GSM3738805 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130448 Peter Walentek Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants. This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control Peter Walentek The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples re 31553905 56304 SRP194164 animal cap explant + tp63 MO - NF24 RNA-Seq NF24 animal cap Haas M et al. (2019) GSM3738805 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt 130816 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue har 31316462 56139 SRP198181 Xtr.thra{tmShiyb} - brain - NF54 RNA-Seq NF54 brain Wen L et al. (2019) GSM3754703,GSM3754704,GSM3754705 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Readme.txt 130816 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue har 31316462 56139 SRP198181 Xtr.thra{tmShiyb} - brain + L-T3 - NF54 RNA-Seq NF54 brain Wen L et al. (2019) GSM3754706,GSM3754707,GSM3754708 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Readme.txt 130816 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue har 31316462 56139 SRP198181 brain - NF54 RNA-Seq NF54 brain Wen L et al. (2019) GSM3754697,GSM3754698,GSM3754699 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Readme.txt 130816 Robert Denver Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation Robert Denver, Luan Wen Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue har 31316462 56139 SRP198181 brain + L-T3 - NF54 RNA-Seq NF54 brain Wen L et al. (2019) GSM3754700,GSM3754701,GSM3754702 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Readme.txt 131962 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 WE - NF9 RNA-Seq NF9 embryo Chen H et al. (2019) GSM3832851,GSM3832852 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Readme.txt 131962 Matthew Good Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using Matthew Good, Hui Chen, Matthew Good Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively 31211992 56041 SRP199866 WE + 5-EU - NF9 RNA-Seq NF9 embryo Chen H et al. (2019) GSM3832849,GSM3832850 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF11 RNA-Seq NF11 embryo Robson A et al. (2019) GSM3844822,GSM3844823,GSM3844824 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF11 RNA-Seq NF11 embryo Robson A et al. (2019) GSM3844822,GSM3844823,GSM3844824 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE - NF11 RNA-Seq NF11 embryo Robson A et al. (2019) GSM3844820,GSM3844821 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF11.5 RNA-Seq NF11.5 embryo Robson A et al. (2019) GSM3844827,GSM3844828,GSM3844829 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF11.5 RNA-Seq NF11.5 embryo Robson A et al. (2019) GSM3844827,GSM3844828,GSM3844829 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE - NF11.5 RNA-Seq NF11.5 embryo Robson A et al. (2019) GSM3844825,GSM3844826 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE - NF12 RNA-Seq NF12 embryo Robson A et al. (2019) GSM3844830,GSM3844831 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF12 RNA-Seq NF12 embryo Robson A et al. (2019) GSM3844832,GSM3844833,GSM3844834 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF12 RNA-Seq NF12 embryo Robson A et al. (2019) GSM3844832,GSM3844833,GSM3844834 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF13 RNA-Seq NF13 embryo Robson A et al. (2019) GSM3844837,GSM3844838,GSM3844839 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF13 RNA-Seq NF13 embryo Robson A et al. (2019) GSM3844837,GSM3844838,GSM3844839 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE - NF13 RNA-Seq NF13 embryo Robson A et al. (2019) GSM3844835,GSM3844836 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE - NF13 late RNA-Seq NF13 embryo Robson A et al. (2019) GSM3844840,GSM3844841 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF13 late RNA-Seq NF13 embryo Robson A et al. (2019) GSM3844842,GSM3844843,GSM3844844 RNA-Seq/Whole Embryo/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 132116 Martina Brueckner Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr Martina Brueckner, Mustafa Khokha Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf 31235600 56064 SRP200236 WE + rnf20 MO - NF13 late RNA-Seq NF13 embryo Robson A et al. (2019) GSM3844842,GSM3844843,GSM3844844 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt 133220 Henry Zhang Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression. Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail. 31794731 56519 SRP211830 tail - NF60 RNA-Seq NF60 tail Nakajima K et al. (2020) GSM3902518,GSM3902519,GSM3902520 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt 133220 Henry Zhang Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression. Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail. 31794731 56519 SRP211830 tail - NF60 RNA-Seq NF60 tail Nakajima K et al. (2020) GSM3902518,GSM3902519,GSM3902520 RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt 133220 Henry Zhang Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression. Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail. 31794731 56519 SRP211830 tail - NF63 RNA-Seq NF63 tail Nakajima K et al. (2020) GSM3902515,GSM3902516,GSM3902517 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt 133220 Henry Zhang Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression. Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail. 31794731 56519 SRP211830 tail - NF63 RNA-Seq NF63 tail Nakajima K et al. (2020) GSM3902515,GSM3902516,GSM3902517 RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt 133220 Henry Zhang Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression. Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail. 31794731 56519 SRP211830 tail + notochord ablation - NF63 RNA-Seq NF63 tail Nakajima K et al. (2020) GSM3902521,GSM3902522,GSM3902523 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt 133220 Henry Zhang Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression. Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail. 31794731 56519 SRP211830 tail + notochord ablation - NF63 RNA-Seq NF63 tail Nakajima K et al. (2020) GSM3902521,GSM3902522,GSM3902523 RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955645,GSM3955646,GSM3955647,GSM3955648 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955645,GSM3955646,GSM3955647,GSM3955648 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Benzo[a]pyrene - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955649,GSM3955650,GSM3955651,GSM3955652 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Benzo[a]pyrene - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955649,GSM3955650,GSM3955651,GSM3955652 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Benzo[a]pyrene - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955649,GSM3955650,GSM3955651,GSM3955652 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Benzo[a]pyrene + Triclosan - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955657,GSM3955658,GSM3955659,GSM3955660 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Benzo[a]pyrene + Triclosan - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955657,GSM3955658,GSM3955659,GSM3955660 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Benzo[a]pyrene + Triclosan - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955657,GSM3955658,GSM3955659,GSM3955660 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Triclosan - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955653,GSM3955654,GSM3955655,GSM3955656 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Triclosan - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955653,GSM3955654,GSM3955655,GSM3955656 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 134545 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis. Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound Stéphane REYNAUD PRJEB18463 31271984 56099 ERP020393 liver + Triclosan - adult RNA-Seq adult liver Usal M et al. (2019) GSM3955653,GSM3955654,GSM3955655,GSM3955656 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 day post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089660,GSM4089661,GSM4089662 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 day post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089660,GSM4089661,GSM4089662 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 1 week post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089663,GSM4089664,GSM4089665 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 1 week post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089663,GSM4089664,GSM4089665 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 week post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089666,GSM4089667,GSM4089668 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 week post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089666,GSM4089667,GSM4089668 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain 1 week post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089669,GSM4089670,GSM4089671 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain 3 week post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089672,GSM4089673,GSM4089674 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain 3 day post amp. - NF53 RNA-Seq NF53 hindbrain Belrose JL et al. (2020) GSM4089657,GSM4089658,GSM4089659 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 day post amp. - juvenile RNA-Seq juvenile hindbrain Belrose JL et al. (2020) GSM4089678,GSM4089679,GSM4089680 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 day post amp. - juvenile RNA-Seq juvenile hindbrain Belrose JL et al. (2020) GSM4089678,GSM4089679,GSM4089680 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 1 week post amp.- juvenile RNA-Seq juvenile hindbrain Belrose JL et al. (2020) GSM4089681,GSM4089682,GSM4089683 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 1 week post amp.- juvenile RNA-Seq juvenile hindbrain Belrose JL et al. (2020) GSM4089681,GSM4089682,GSM4089683 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 week post amp. - juvenile RNA-Seq juvenile hindbrain Belrose JL et al. (2020) GSM4089684,GSM4089685,GSM4089686 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain + spinal cord amputation 3 week post amp. - juvenile RNA-Seq juvenile hindbrain Belrose JL et al. (2020) GSM4089684,GSM4089685,GSM4089686 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 hindbrain - juvenile RNA-Seq juvenile hindbrain Belrose JL et al. (2020) GSM4089675,GSM4089676,GSM4089677 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089687,GSM4089688,GSM4089689 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye + optic nerve amputation 3 day post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089690,GSM4089691,GSM4089692 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye + optic nerve amputation 3 day post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089690,GSM4089691,GSM4089692 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye 3 day post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089693,GSM4089694,GSM4089695 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye + optic nerve amputation 11 day post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089696,GSM4089697,GSM4089698 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye + optic nerve amputation 11 day post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089696,GSM4089697,GSM4089698 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye 11 day post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089699,GSM4089700,GSM4089701 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye + optic nerve amputation 3 week post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089702,GSM4089703,GSM4089704 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye + optic nerve amputation 3 week post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089702,GSM4089703,GSM4089704 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 137844 Ben Szaro Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic ner 32758133 57252 SRP222957 eye 3 week post amp. - juvenile RNA-Seq juvenile eye Belrose JL et al. (2020) GSM4089705,GSM4089706,GSM4089707 RNA-Seq/Adult Tissues laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 tail - NF40 ATAC-Seq NF40 tail GSM4105018,GSM4105019 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 tail + tail amputation - NF40 ATAC-Seq NF40 tail GSM4105020,GSM4105021 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 regenerating tail + tail amputation - NF40 +2hpa ATAC-Seq NF40 regenerating tail GSM4105024,GSM4105025 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 regenerating tail + tail amputation - NF40 +3hpa ATAC-Seq NF40 regenerating tail GSM4105026,GSM4105027 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 regenerating tail + tail amputation - NF40 +6hpa ATAC-Seq NF40 regenerating tail GSM4105028,GSM4105029 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 regenerating tail + tail amputation - NF40 +1hpa ATAC-Seq NF40 regenerating tail GSM4105022,GSM4105023 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 regenerating tail + tail amputation - NF42 +15hpa ATAC-Seq NF42 regenerating tail GSM4105030,GSM4105031 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 regenerating tail + tail amputation - NF43 +24hpa ATAC-Seq NF43 regenerating tail GSM4105032,GSM4105033 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138303 Jessica Chang ATAC-Seq of Xenopus tail regeneration Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.Ple 0 57142 SRP223949 regenerating tail + tail amputation - NF47 +72hpa ATAC-Seq NF47 regenerating tail GSM4105034,GSM4105035 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt 138905 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 Animal cap - NF10 ATAC-Seq NF10 animal cap Esmaeili M et al. (2020) GSM4121478,GSM4121479,GSM4121480 ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Readme.txt 138905 Peter Klein ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula). 0 56750 SRP225796 Animal cap - NF12 ATAC-Seq NF12 animal cap Esmaeili M et al. (2020) GSM4121481,GSM4121482,GSM4121483 ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Readme.txt 139267 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP226648 midbrain - NF50 MBD-Seq NF50 midbrain Kyono Y et al. (2020) GSM4135836,GSM4135837,GSM4135838 MBD-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt 139267 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP226648 midbrain - NF56 MBD-Seq NF56 midbrain Kyono Y et al. (2020) GSM4135839,GSM4135840,GSM4135841 MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt 139267 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP226648 midbrain - NF62 MBD-Seq NF62 midbrain Kyono Y et al. (2020) GSM4135842,GSM4135843,GSM4135844 MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt 139267 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP226648 midbrain - NF66 MBD-Seq NF66 midbrain Kyono Y et al. (2020) GSM4135845,GSM4135846,GSM4135847 MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt 139267 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP226648 input midbrain - NF50 MBD-Seq NF50 midbrain Kyono Y et al. (2020) GSM4135833 MBD-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt 139267 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP226648 input midbrain - NF56 MBD-Seq NF56 midbrain Kyono Y et al. (2020) GSM4135834 MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt 139267 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP226648 input midbrain - NF62 MBD-Seq NF62 midbrain Kyono Y et al. (2020) GSM4135835 MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt 140120 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP229123 midbrain - NF50 RNA-Seq NF50 midbrain Kyono Y et al. (2020) GSM4154616,GSM4154617,GSM4154618 RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt 140120 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP229123 midbrain - NF56 RNA-Seq NF56 midbrain Kyono Y et al. (2020) GSM4154619,GSM4154620,GSM4154621 RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt 140120 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP229123 midbrain - NF62 RNA-Seq NF62 midbrain Kyono Y et al. (2020) GSM4154622,GSM4154623,GSM4154624 RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt 140120 Robert Denver DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq] Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorph 32240642 56853 SRP229123 midbrain - NF66 RNA-Seq NF66 midbrain Kyono Y et al. (2020) GSM4154625,GSM4154626,GSM4154627 RNA-Seq/Embryonic Tissues/juvenile frog tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 marginal zone explant + pnhd MO - NF10.5 RNA-Seq NF10.5 marginal zone Ossipova O et al. (2020) GSM4274732,GSM4274733 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 marginal zone explant + pnhd MO - NF10.5 RNA-Seq NF10.5 marginal zone Ossipova O et al. (2020) GSM4274732,GSM4274733 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 marginal zone explant + pnhd MO - NF10.5 RNA-Seq NF10.5 marginal zone Ossipova O et al. (2020) GSM4274732,GSM4274733 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 animal cap explant - NF11 RNA-Seq NF11 animal cap Ossipova O et al. (2020) GSM4274730,GSM4274731 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 animal cap explant - NF11 RNA-Seq NF11 animal cap Ossipova O et al. (2020) GSM4274730,GSM4274731 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 marginal zone explant - NF10.5 RNA-Seq NF10.5 marginal zone Ossipova O et al. (2020) GSM4274726,GSM4274727 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 marginal zone explant - NF10.5 RNA-Seq NF10.5 marginal zone Ossipova O et al. (2020) GSM4274726,GSM4274727 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 animal cap explant + pnhd-FLAG - NF11 RNA-Seq NF11 animal cap Ossipova O et al. (2020) GSM4274728,GSM4274729 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 animal cap explant + pnhd-FLAG - NF11 RNA-Seq NF11 animal cap Ossipova O et al. (2020) GSM4274728,GSM4274729 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 143795 Olga Ossipova Specification of embryonic mesoderm by Pinhead signaling Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan. Mesoderm is specified by secre Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and 32859582 57304 SRP242211 animal cap explant + pnhd-FLAG - NF11 RNA-Seq NF11 animal cap Ossipova O et al. (2020) GSM4274728,GSM4274729 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 WE - NF9 ATAC-Seq NF9 embryo Bright AR et al. (2021) GSM4322283,GSM4322284 ATAC-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 WE - NF10.5 ATAC-Seq NF10.5 embryo Bright AR et al. (2021) GSM4322285,GSM4322286 ATAC-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 WE - NF12 ATAC-Seq NF12 embryo Bright AR et al. (2021) GSM4322287,GSM4322288 ATAC-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 WE - NF16 ATAC-Seq NF16 embryo Bright AR et al. (2021) GSM4322289,GSM4322290 ATAC-Seq/Whole Embryo/Neurula NF13 to NF21 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap - NF10.5 ATAC-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322291,GSM4322292 ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 dorsal marginal zone - NF10.5 ATAC-Seq NF10.5 dorsal marginal zone Bright AR et al. (2021) GSM4322293,GSM4322294 ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - eomes - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322301,GSM4322302 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - eomes - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322301,GSM4322302 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - foxb1 + eomes - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322299,GSM4322300 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - foxb1 + eomes - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322299,GSM4322300 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - foxb1 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322297,GSM4322298 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - foxb1 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322297,GSM4322298 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - irx3 + otx2 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322305,GSM4322306 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - irx3 + otx2 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322305,GSM4322306 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - irx3 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322303,GSM4322304 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - irx3 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322303,GSM4322304 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - lhx8 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322309,GSM4322310 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - lhx8 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322309,GSM4322310 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - otx2 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322307,GSM4322308 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - otx2 - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322307,GSM4322308 Manipulations/mRNA Injection tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 145619 Ann Bright Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal cap 33555045 57790 SRP250335 animal cap explant - NF10.5 RNA-Seq NF10.5 animal cap Bright AR et al. (2021) GSM4322295,GSM4322296 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 WE + posterior tail amputation - NF41 ATAC-Seq NF41 whole organism Kakebeen AD et al. (2020) GSM4407623,GSM4407624 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 WE + posterior tail amputation - NF41 ATAC-Seq NF41 whole organism Kakebeen AD et al. (2020) GSM4407623,GSM4407624 ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 WE + posterior tail amputation - NF45 ATAC-Seq NF45 whole organism Kakebeen AD et al. (2020) GSM4407628,GSM4407629,GSM4407630 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 WE + posterior tail amputation - NF45 ATAC-Seq NF45 whole organism Kakebeen AD et al. 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(2020) GSM4407625,GSM4407626,GSM4407627 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 WE + posterior tail amputation - NF42 ATAC-Seq NF42 whole organism Kakebeen AD et al. (2020) GSM4407625,GSM4407626,GSM4407627 ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 WE - NF41 ATAC-Seq NF41 whole organism Kakebeen AD et al. 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(2020) GSM4407631,GSM4407632,GSM4407633,GSM4407634 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 WE + posterior tail amputation - NF47 ATAC-Seq NF47 whole organism Kakebeen AD et al. (2020) GSM4407631,GSM4407632,GSM4407633,GSM4407634 ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 posterior tail - NF41 Pax6+ ATAC-Seq NF41 Kakebeen AD et al. 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(2020) GSM4407635,GSM4407636,GSM4407637 ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF41 Pax6+ ATAC-Seq NF41 regenerating tail Kakebeen AD et al. (2020) GSM4407638,GSM4407639,GSM4407640 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF41 Pax6+ ATAC-Seq NF41 regenerating tail Kakebeen AD et al. (2020) GSM4407638,GSM4407639,GSM4407640 ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF42 Pax6+ ATAC-Seq NF42 regenerating tail Kakebeen AD et al. (2020) GSM4407641,GSM4407642,GSM4407643 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF42 Pax6+ ATAC-Seq NF42 regenerating tail Kakebeen AD et al. (2020) GSM4407641,GSM4407642,GSM4407643 ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF45 Pax6+ ATAC-Seq NF45 regenerating tail Kakebeen AD et al. (2020) GSM4407644,GSM4407645,GSM4407646 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF45 Pax6+ ATAC-Seq NF45 regenerating tail Kakebeen AD et al. (2020) GSM4407644,GSM4407645,GSM4407646 ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF47 Pax6+ ATAC-Seq NF47 regenerating tail Kakebeen AD et al. (2020) GSM4407647,GSM4407648,GSM4407649 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146830 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration 0 56933 SRP252458 regenerating tail + posterior tail amputation - NF47 Pax6+ ATAC-Seq NF47 regenerating tail Kakebeen AD et al. (2020) GSM4407647,GSM4407648,GSM4407649 ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt 146836 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, A Kakebeen, A Wills Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenop 0 56933 SRP252466 posterior tail - NF41 RNA-Seq NF41 Kakebeen AD et al. (2020) GSM4407688 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Readme.txt 146836 Anneke Kakebeen Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation Anneke Kakebeen, A Kakebeen, A Wills Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenop 0 56933 SRP252466 regenerating tail - NF45 RNA-Seq NF45 regenerating tail Kakebeen AD et al. (2020) GSM4407689 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF5 RNA-Seq NF5 anatomical entity in GSM4435542,GSM4435543,GSM4435544 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF5 RNA-Seq NF5 anatomical entity in GSM4435542,GSM4435543,GSM4435544 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF5 RNA-Seq NF5 anatomical entity in GSM4435542,GSM4435543,GSM4435544 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF6 RNA-Seq NF6 anatomical entity in GSM4435545,GSM4435546,GSM4435547 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF6 RNA-Seq NF6 anatomical entity in GSM4435545,GSM4435546,GSM4435547 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF6 RNA-Seq NF6 anatomical entity in GSM4435545,GSM4435546,GSM4435547 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF4 RNA-Seq NF4 anatomical entity in GSM4435539,GSM4435540,GSM4435541 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF4 RNA-Seq NF4 anatomical entity in GSM4435539,GSM4435540,GSM4435541 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF4 RNA-Seq NF4 anatomical entity in GSM4435539,GSM4435540,GSM4435541 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF8 RNA-Seq NF8 anatomical entity in GSM4435548,GSM4435549,GSM4435550 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF8 RNA-Seq NF8 anatomical entity in GSM4435548,GSM4435549,GSM4435550 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF8 RNA-Seq NF8 anatomical entity in GSM4435548,GSM4435549,GSM4435550 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF11 RNA-Seq NF11 anatomical entity in GSM4435551,GSM4435552,GSM4435553 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF11 RNA-Seq NF11 anatomical entity in GSM4435551,GSM4435552,GSM4435553 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF11 RNA-Seq NF11 anatomical entity in GSM4435551,GSM4435552,GSM4435553 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF14 RNA-Seq NF14 anatomical entity in GSM4435554,GSM4435555,GSM4435556 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF14 RNA-Seq NF14 anatomical entity in GSM4435554,GSM4435555,GSM4435556 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF14 RNA-Seq NF14 anatomical entity in GSM4435554,GSM4435555,GSM4435556 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF17 RNA-Seq NF17 anatomical entity in GSM4435557,GSM4435558,GSM4435559 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF17 RNA-Seq NF17 anatomical entity in GSM4435557,GSM4435558,GSM4435559 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 explant - NF17 RNA-Seq NF17 anatomical entity in GSM4435557,GSM4435558,GSM4435559 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF5 RNA-Seq NF5 blastomere GSM4435521,GSM4435522,GSM4435523 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF5 RNA-Seq NF5 blastomere GSM4435521,GSM4435522,GSM4435523 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF5 RNA-Seq NF5 blastomere GSM4435521,GSM4435522,GSM4435523 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF6 RNA-Seq NF6 blastomere GSM4435524,GSM4435525,GSM4435526 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF6 RNA-Seq NF6 blastomere GSM4435524,GSM4435525,GSM4435526 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF6 RNA-Seq NF6 blastomere GSM4435524,GSM4435525,GSM4435526 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF4 RNA-Seq NF4 blastomere GSM4435518,GSM4435519,GSM4435520 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF4 RNA-Seq NF4 blastomere GSM4435518,GSM4435519,GSM4435520 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF4 RNA-Seq NF4 blastomere GSM4435518,GSM4435519,GSM4435520 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF8 RNA-Seq NF8 animal hemisphere GSM4435527,GSM4435528,GSM4435529 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF8 RNA-Seq NF8 animal hemisphere GSM4435527,GSM4435528,GSM4435529 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF8 RNA-Seq NF8 animal hemisphere GSM4435527,GSM4435528,GSM4435529 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF11 RNA-Seq NF11 ectoderm GSM4435530,GSM4435531,GSM4435532 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF11 RNA-Seq NF11 ectoderm GSM4435530,GSM4435531,GSM4435532 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF11 RNA-Seq NF11 ectoderm GSM4435530,GSM4435531,GSM4435532 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF14 RNA-Seq NF14 ectoderm GSM4435533,GSM4435534,GSM4435535 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF14 RNA-Seq NF14 ectoderm GSM4435533,GSM4435534,GSM4435535 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF14 RNA-Seq NF14 ectoderm GSM4435533,GSM4435534,GSM4435535 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF17 RNA-Seq NF17 ectoderm GSM4435536,GSM4435537,GSM4435538 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF17 RNA-Seq NF17 ectoderm GSM4435536,GSM4435537,GSM4435538 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 147621 Paul Huber Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal Paul Huber, Kyle Dubiak, Paul Huber Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq. 0 60223 SRP254296 blastomere D1 progeny- NF17 RNA-Seq NF17 ectoderm GSM4435536,GSM4435537,GSM4435538 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 pan-Sox17 WE - NF10.5 ChIP-Seq NF10.5 embryo Mukherjee S et al. (2020) GSM4477737,GSM4477738 ChIP-Seq/Transcription Factor/Sox17 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF10.5 RNA-Seq NF10.5 embryo Mukherjee S et al. (2020) GSM4477745,GSM4477773 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF10.5 RNA-Seq NF10.5 embryo Mukherjee S et al. (2020) GSM4477745,GSM4477773 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF10 RNA-Seq NF10 embryo Mukherjee S et al. (2020) GSM4477743,GSM4477771 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF10 RNA-Seq NF10 embryo Mukherjee S et al. (2020) GSM4477743,GSM4477771 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF11 RNA-Seq NF11 embryo Mukherjee S et al. (2020) GSM4477747,GSM4477775 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF11 RNA-Seq NF11 embryo Mukherjee S et al. (2020) GSM4477747,GSM4477775 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF12 RNA-Seq NF12 embryo Mukherjee S et al. (2020) GSM4477749,GSM4477777 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF12 RNA-Seq NF12 embryo Mukherjee S et al. (2020) GSM4477749,GSM4477777 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1 MO - NF9 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477739,GSM4477767 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1 MO - NF9 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477739,GSM4477767 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF9.5 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477741,GSM4477769 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + sox17a MO + sox17b.1/b.2 MO - NF9.5 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477741,GSM4477769 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF10.5 RNA-Seq NF10.5 embryo Mukherjee S et al. (2020) GSM4477762,GSM4477790 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF10 RNA-Seq NF10 embryo Mukherjee S et al. (2020) GSM4477760,GSM4477788 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF11 RNA-Seq NF11 embryo Mukherjee S et al. (2020) GSM4477764 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF12 RNA-Seq NF12 embryo Mukherjee S et al. (2020) GSM4477766 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF7 RNA-Seq NF7 embryo Mukherjee S et al. (2020) GSM4477752,GSM4477780 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF8 RNA-Seq NF8 embryo Mukherjee S et al. (2020) GSM4477754,GSM4477782 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF9 RNA-Seq NF9 embryo Mukherjee S et al. 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(2020) GSM4477761,GSM4477789 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF10.5 RNA-Seq NF10.5 embryo Mukherjee S et al. (2020) GSM4477761,GSM4477789 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF10 RNA-Seq NF10 embryo Mukherjee S et al. (2020) GSM4477759,GSM4477787 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF10 RNA-Seq NF10 embryo Mukherjee S et al. (2020) GSM4477759,GSM4477787 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF11 RNA-Seq NF11 embryo Mukherjee S et al. (2020) GSM4477763 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF11 RNA-Seq NF11 embryo Mukherjee S et al. 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(2020) GSM4477765 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF7 RNA-Seq NF7 embryo Mukherjee S et al. 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(2020) GSM4477751,GSM4477779 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF8 RNA-Seq NF8 embryo Mukherjee S et al. (2020) GSM4477753,GSM4477781 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF8 RNA-Seq NF8 embryo Mukherjee S et al. (2020) GSM4477753,GSM4477781 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477755,GSM4477783 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF9 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477755,GSM4477783 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF9.5 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477757,GSM4477785 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE + ctnnb1 MO - NF9.5 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477757,GSM4477785 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF10 RNA-Seq NF10 embryo Mukherjee S et al. (2020) GSM4477744,GSM4477772 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF10.5 RNA-Seq NF10.5 embryo Mukherjee S et al. (2020) GSM4477746,GSM4477774 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF11 RNA-Seq NF11 embryo Mukherjee S et al. (2020) GSM4477748,GSM4477776 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF12 RNA-Seq NF12 embryo Mukherjee S et al. (2020) GSM4477750,GSM4477778 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF9 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477740,GSM4477768 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 148726 Kitt Paraiso Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 32894225 57340 SRP256469 WE - NF9.5 RNA-Seq NF9 embryo Mukherjee S et al. (2020) GSM4477742,GSM4477770 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt 149538 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a 32467234 57038 SRP258988 brain + dyrk1a CRISPR - NF46 RNA-Seq NF46 brain Willsey HR et al. (2020) GSM4504552,GSM4504553,GSM4504554 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Readme.txt 149538 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a 32467234 57038 SRP258988 brain + dyrk1a CRISPR - NF46 RNA-Seq NF46 brain Willsey HR et al. (2020) GSM4504552,GSM4504553,GSM4504554 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Readme.txt 149538 Arthur Willsey Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In Arthur Willsey, Helen Willsey, A Willsey 3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a 32467234 57038 SRP258988 brain - NF46 RNA-Seq NF46 brain Willsey HR et al. (2020) GSM4504555,GSM4504556,GSM4504557 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 intestine - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551285,GSM4551286,GSM4551287 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 intestine - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551285,GSM4551286,GSM4551287 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 intestine + L-T3 - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551288,GSM4551289,GSM4551290 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 intestine + L-T3 - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551288,GSM4551289,GSM4551290 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 intestine + L-T3 - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551288,GSM4551289,GSM4551290 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 Xtr.thra{tmShiyb} intestine + L-T3 - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551294,GSM4551295,GSM4551296 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 Xtr.thra{tmShiyb} intestine + L-T3 - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551294,GSM4551295,GSM4551296 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 Xtr.thra{tmShiyb} intestine + L-T3 - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551294,GSM4551295,GSM4551296 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 Xtr.thra{tmShiyb} intestine - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551291,GSM4551292,GSM4551293 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150487 Henry Zhang RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment. Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 32515287 57070 Xtr.thra{tmShiyb} intestine - NF52-54 RNA-Seq NF52 intestine Tanizaki Y et al. (2021) GSM4551291,GSM4551292,GSM4551293 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt 150911 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 liver - adult F1 RNA-Seq adult liver Usal M et al. (2021) GSM4560793,GSM4560794,GSM4560795,GSM4560796,GSM4560797 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt 150911 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 liver - adult F2 RNA-Seq adult liver Usal M et al. (2021) GSM4560804,GSM4560805,GSM4560806,GSM4560807,GSM4560808 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt 150911 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 liver + ancestral Benzo(a)pyrene exposure - adult F1 RNA-Seq adult liver Usal M et al. (2021) GSM4560798,GSM4560799,GSM4560800,GSM4560801,GSM4560802,GSM4560803 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt 150911 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 liver + ancestral Benzo(a)pyrene exposure - adult F1 RNA-Seq adult liver Usal M et al. (2021) GSM4560798,GSM4560799,GSM4560800,GSM4560801,GSM4560802,GSM4560803 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt 150911 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 liver + ancestral Benzo(a)pyrene exposure - adult F2 RNA-Seq adult liver Usal M et al. (2021) GSM4560809,GSM4560810,GSM4560811,GSM4560812,GSM4560813 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt 150911 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females. 33234375 57563 SRP262433 liver + ancestral Benzo(a)pyrene exposure - adult F2 RNA-Seq adult liver Usal M et al. (2021) GSM4560809,GSM4560810,GSM4560811,GSM4560812,GSM4560813 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF5 polyA mRNA RNA-Seq NF5 embryo Phelps WA et al. (2021) GSM4629157 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF5 polyA mRNA RNA-Seq NF5 embryo Phelps WA et al. (2021) GSM4629157 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF5 rRNA depleted RNA-Seq NF5 embryo Phelps WA et al. (2021) GSM4629156 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF5 rRNA depleted RNA-Seq NF5 embryo Phelps WA et al. (2021) GSM4629156 RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF8 polyA mRNA RNA-Seq NF8 embryo Phelps WA et al. (2021) GSM4629160 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF8 polyA mRNA RNA-Seq NF8 embryo Phelps WA et al. (2021) GSM4629160 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF8 rRNA depleted RNA-Seq NF8 embryo Phelps WA et al. (2021) GSM4629159 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF8 rRNA depleted RNA-Seq NF8 embryo Phelps WA et al. (2021) GSM4629159 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF8 RNA-Seq NF8 embryo Phelps WA et al. (2021) GSM4629158 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 152902 Miler Lee Optimized design of antisense oligomers for targeted RNA depletion RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo Miler Lee, Wesley Phelps RNA-seq with different mRNA enrichment methods 33221877 57554 SRP268142 WE - NF8 RNA-Seq NF8 embryo Phelps WA et al. (2021) GSM4629158 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt 153058 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One repl 33875480 58022 SRP268455 CENP-A nucleate erythrocyte - adult ChIP-Seq adult nucleate erythrocyte Smith OK et al. (2021) GSM4633643,GSM4633644,GSM4633645,GSM4633646,GSM4633647 ChIP-Seq/Epigenetic/CENP-A laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Readme.txt 153058 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One repl 33875480 58022 SRP268455 Histone H4 nucleate erythrocyte - adult ChIP-Seq adult nucleate erythrocyte Smith OK et al. (2021) GSM4633648,GSM4633649,GSM4633650,GSM4633651,GSM4633652 ChIP-Seq/Epigenetic/H4 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Readme.txt 153058 Owen Smith Identification and characterization of centromeric sequences in Xenopus laevis Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One repl 33875480 58022 SRP268455 input nucleate erythrocyte - adult ChIP-Seq adult nucleate erythrocyte Smith OK et al. (2021) GSM4633653,GSM4633654,GSM4633655,GSM4633656,GSM4633657 None laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF8 RNA-Seq NF8 animal cap Satou-Kobayashi Y et al. (2021) GSM4658475,GSM4658476,GSM4658477 RNA-Seq/Embryonic Tissues/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF8 RNA-Seq NF8 animal cap Satou-Kobayashi Y et al. (2021) GSM4658475,GSM4658476,GSM4658477 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF8 RNA-Seq NF8 animal cap Satou-Kobayashi Y et al. (2021) GSM4658475,GSM4658476,GSM4658477 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF8 RNA-Seq NF8 animal cap Satou-Kobayashi Y et al. (2021) GSM4658475,GSM4658476,GSM4658477 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - NF8 RNA-Seq NF8 animal cap Satou-Kobayashi Y et al. (2021) GSM4658472,GSM4658473,GSM4658474 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - NF8 RNA-Seq NF8 animal cap Satou-Kobayashi Y et al. (2021) GSM4658472,GSM4658473,GSM4658474 RNA-Seq/Embryonic Tissues/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF9 RNA-Seq NF9 animal cap Satou-Kobayashi Y et al. (2021) GSM4658478,GSM4658479,GSM4658480 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF9 RNA-Seq NF9 animal cap Satou-Kobayashi Y et al. (2021) GSM4658478,GSM4658479,GSM4658480 RNA-Seq/Embryonic Tissues/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF9 RNA-Seq NF9 animal cap Satou-Kobayashi Y et al. (2021) GSM4658478,GSM4658479,GSM4658480 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF9 RNA-Seq NF9 animal cap Satou-Kobayashi Y et al. (2021) GSM4658478,GSM4658479,GSM4658480 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF10.25 RNA-Seq NF10.25 animal cap Satou-Kobayashi Y et al. (2021) GSM4658481,GSM4658482,GSM4658483 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF10.25 RNA-Seq NF10.25 animal cap Satou-Kobayashi Y et al. (2021) GSM4658481,GSM4658482,GSM4658483 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF10.25 RNA-Seq NF10.25 animal cap Satou-Kobayashi Y et al. (2021) GSM4658481,GSM4658482,GSM4658483 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF10.25 RNA-Seq NF10.25 animal cap Satou-Kobayashi Y et al. (2021) GSM4658481,GSM4658482,GSM4658483 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF12.5 RNA-Seq NF12.5 animal cap Satou-Kobayashi Y et al. (2021) GSM4658484,GSM4658485,GSM4658486 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF12.5 RNA-Seq NF12.5 animal cap Satou-Kobayashi Y et al. (2021) GSM4658484,GSM4658485,GSM4658486 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF12.5 RNA-Seq NF12.5 animal cap Satou-Kobayashi Y et al. (2021) GSM4658484,GSM4658485,GSM4658486 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 153925 Jun-Dal Kim Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment. In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using th 34267234 58287 SRP270638 animal cap - Activin + animal cap explant - NF12.5 RNA-Seq NF12.5 animal cap Satou-Kobayashi Y et al. (2021) GSM4658484,GSM4658485,GSM4658486 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670472,GSM4670488,GSM4670504,GSM4670520,GSM4670536,GSM4670552 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670472,GSM4670488,GSM4670504,GSM4670520,GSM4670536,GSM4670552 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670475,GSM4670491,GSM4670507,GSM4670523,GSM4670539,GSM4670555 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670475,GSM4670491,GSM4670507,GSM4670523,GSM4670539,GSM4670555 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670475,GSM4670491,GSM4670507,GSM4670523,GSM4670539,GSM4670555 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670479,GSM4670495,GSM4670511,GSM4670527,GSM4670543,GSM4670559 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670479,GSM4670495,GSM4670511,GSM4670527,GSM4670543,GSM4670559 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670479,GSM4670495,GSM4670511,GSM4670527,GSM4670543,GSM4670559 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670483,GSM4670499,GSM4670515,GSM4670531,GSM4670547,GSM4670563 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670483,GSM4670499,GSM4670515,GSM4670531,GSM4670547,GSM4670563 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670483,GSM4670499,GSM4670515,GSM4670531,GSM4670547,GSM4670563 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670487,GSM4670503,GSM4670519,GSM4670535,GSM4670551,GSM4670567 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670487,GSM4670503,GSM4670519,GSM4670535,GSM4670551,GSM4670567 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + EtOH - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670487,GSM4670503,GSM4670519,GSM4670535,GSM4670551,GSM4670567 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670473,GSM4670489,GSM4670505,GSM4670521,GSM4670537,GSM4670553 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670473,GSM4670489,GSM4670505,GSM4670521,GSM4670537,GSM4670553 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670473,GSM4670489,GSM4670505,GSM4670521,GSM4670537,GSM4670553 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670477,GSM4670493,GSM4670509,GSM4670525,GSM4670541,GSM4670557 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670477,GSM4670493,GSM4670509,GSM4670525,GSM4670541,GSM4670557 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670477,GSM4670493,GSM4670509,GSM4670525,GSM4670541,GSM4670557 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670481,GSM4670497,GSM4670513,GSM4670529,GSM4670545,GSM4670561 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670481,GSM4670497,GSM4670513,GSM4670529,GSM4670545,GSM4670561 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670481,GSM4670497,GSM4670513,GSM4670529,GSM4670545,GSM4670561 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670485,GSM4670501,GSM4670517,GSM4670533,GSM4670549,GSM4670565 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670485,GSM4670501,GSM4670517,GSM4670533,GSM4670549,GSM4670565 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + Retinoic acid - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670485,GSM4670501,GSM4670517,GSM4670533,GSM4670549,GSM4670565 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670474,GSM4670490,GSM4670506,GSM4670522,GSM4670538,GSM4670554 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670474,GSM4670490,GSM4670506,GSM4670522,GSM4670538,GSM4670554 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF10.25 RNA-Seq NF10.25 embryo Parihar M et al. (2021) GSM4670474,GSM4670490,GSM4670506,GSM4670522,GSM4670538,GSM4670554 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670478,GSM4670494,GSM4670510,GSM4670526,GSM4670542,GSM4670558 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670478,GSM4670494,GSM4670510,GSM4670526,GSM4670542,GSM4670558 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670478,GSM4670494,GSM4670510,GSM4670526,GSM4670542,GSM4670558 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670482,GSM4670498,GSM4670514,GSM4670530,GSM4670546,GSM4670562 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670482,GSM4670498,GSM4670514,GSM4670530,GSM4670546,GSM4670562 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670482,GSM4670498,GSM4670514,GSM4670530,GSM4670546,GSM4670562 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670486,GSM4670502,GSM4670518,GSM4670534,GSM4670550,GSM4670566 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670486,GSM4670502,GSM4670518,GSM4670534,GSM4670550,GSM4670566 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE + DEAB - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670486,GSM4670502,GSM4670518,GSM4670534,GSM4670550,GSM4670566 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670476,GSM4670492,GSM4670508,GSM4670524,GSM4670540,GSM4670556 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF11.5 RNA-Seq NF11.5 embryo Parihar M et al. (2021) GSM4670476,GSM4670492,GSM4670508,GSM4670524,GSM4670540,GSM4670556 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670480,GSM4670496,GSM4670512,GSM4670528,GSM4670544,GSM4670560 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF12 RNA-Seq NF12 embryo Parihar M et al. (2021) GSM4670480,GSM4670496,GSM4670512,GSM4670528,GSM4670544,GSM4670560 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670484,GSM4670500,GSM4670516,GSM4670532,GSM4670548,GSM4670564 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154399 Rajanikanth Vadigepalli Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq) Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of 34746144 58611 SRP224065 WE - NF12.5 RNA-Seq NF12.5 embryo Parihar M et al. (2021) GSM4670484,GSM4670500,GSM4670516,GSM4670532,GSM4670548,GSM4670564 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt 154766 Chao Yang Detection of RNAs binding to Vg1 RNP We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA in oocyte Chao Yang, Paul Huber Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added t 0 57689 SRP272643 oocyte + biotin-gdf1 + streptavidin-beads - oocyte III-IV RNA-Seq oocyte III oocyte GSM4679353 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt 154766 Chao Yang Detection of RNAs binding to Vg1 RNP We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA in oocyte Chao Yang, Paul Huber Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added t 0 57689 SRP272643 oocyte + biotin-gdf1 + streptavidin-beads - oocyte III-IV RNA-Seq oocyte III oocyte GSM4679353 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt 154766 Chao Yang Detection of RNAs binding to Vg1 RNP We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA in oocyte Chao Yang, Paul Huber Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added t 0 57689 SRP272643 oocyte + biotin-gdf1 + streptavidin-beads - oocyte III-IV RNA-Seq oocyte III oocyte GSM4679353 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt 154766 Chao Yang Detection of RNAs binding to Vg1 RNP We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA in oocyte Chao Yang, Paul Huber Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added t 0 57689 SRP272643 oocyte + biotin-gdf1 + streptavidin-beads - oocyte III-IV RNA-Seq oocyte III oocyte GSM4679353 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain - NF40 RNA-Seq NF40 brain Willsey HR et al. (2021) GSM4706056,GSM4706057,GSM4706058 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain - NF42 RNA-Seq NF42 brain Willsey HR et al. (2021) GSM4706059,GSM4706060,GSM4706061 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain - NF44 RNA-Seq NF44 brain Willsey HR et al. (2021) GSM4706062,GSM4706063,GSM4706064 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain - NF45 RNA-Seq NF45 brain Willsey HR et al. (2021) GSM4706065,GSM4706066,GSM4706067 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain - NF46 RNA-Seq NF46 brain Willsey HR et al. (2021) GSM4706068,GSM4706069,GSM4706070 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain - NF47 RNA-Seq NF47 brain Willsey HR et al. (2021) GSM4706071,GSM4706072,GSM4706073 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain + estradiol - NF46 RNA-Seq NF46 brain Willsey HR et al. (2021) GSM4706047,GSM4706048,GSM4706049 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain + estradiol - NF46 RNA-Seq NF46 brain Willsey HR et al. (2021) GSM4706047,GSM4706048,GSM4706049 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain + CYCLOPAMINE - NF46 RNA-Seq NF46 brain Willsey HR et al. (2021) GSM4706050,GSM4706051,GSM4706052 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain + CYCLOPAMINE - NF46 RNA-Seq NF46 brain Willsey HR et al. (2021) GSM4706050,GSM4706051,GSM4706052 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 155553 Arthur Willsey Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus] Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k Arthur Willsey, Helen Willsey, A Willsey 3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls. 33497602 57754 SRP275563 brain - NF46 RNA-Seq NF46 brain Willsey HR et al. (2021) GSM4706053,GSM4706054,GSM4706055 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt 158331 Anneke Kakebeen Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to reg 33137227 57511 SRP284834 regenerating tail + posterior tail amputation - NF41 FACS ATAC-Seq NF41 regenerating tail Kakebeen AD et al. (2021) GSM4797961 ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt 158331 Anneke Kakebeen Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to reg 33137227 57511 SRP284834 regenerating tail + posterior tail amputation - NF41 FACS ATAC-Seq NF41 regenerating tail Kakebeen AD et al. (2021) GSM4797961 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt 158331 Anneke Kakebeen Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to reg 33137227 57511 SRP284834 regenerating tail + posterior tail amputation - NF41 ATAC-Seq NF41 regenerating tail Kakebeen AD et al. (2021) GSM4797960 ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44 tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt 158331 Anneke Kakebeen Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to reg 33137227 57511 SRP284834 regenerating tail + posterior tail amputation - NF41 ATAC-Seq NF41 regenerating tail Kakebeen AD et al. (2021) GSM4797960 Manipulations/Other tropicalis XT100 XENTR_10.0 Curation Complete|PL Done|Loader Ready ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt 158664 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 WE - NF12.5 RNA-Seq NF12.5 embryo Orlov EE et al. (2022) GSM4805186,GSM4805187,GSM4805188 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Readme.txt 158664 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 WE - blastomere explant - NF12.5 RNA-Seq NF12.5 embryo Orlov EE et al. (2022) GSM4805183,GSM4805184,GSM4805185 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Readme.txt 158664 Evgeny Orlov Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage) 34919801 58752 SRP285632 WE - blastomere explant - NF12.5 RNA-Seq NF12.5 embryo Orlov EE et al. (2022) GSM4805183,GSM4805184,GSM4805185 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 animal cap explant - NF11 RNA-Seq NF11 animal cap Kakebeen AD et al. (2021) GSM4879085,GSM4879097 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 animal cap explant - NF11 RNA-Seq NF11 animal cap Kakebeen AD et al. 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(2021) GSM4879080,GSM4879092 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF14 RNA-Seq NF14 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879080,GSM4879092 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF15 RNA-Seq NF15 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879081,GSM4879093 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF15 RNA-Seq NF15 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879081,GSM4879093 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF16 RNA-Seq NF16 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879082,GSM4879094 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF16 RNA-Seq NF16 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879082,GSM4879094 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF17 RNA-Seq NF17 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879083,GSM4879095 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF17 RNA-Seq NF17 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879083,GSM4879095 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF18 RNA-Seq NF18 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879084,GSM4879096 RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 160777 Anneke Kakebeen A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18. 0 57664 SRP291031 dorsal marginal zone explant - NF18 RNA-Seq NF18 dorsal marginal zone Kakebeen AD et al. (2021) GSM4879084,GSM4879096 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903938,GSM4903939 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903938,GSM4903939 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903938,GSM4903939 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903938,GSM4903939 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903940,GSM4903941 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903940,GSM4903941 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903940,GSM4903941 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161247 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates. 37116939 59747 SRP292400 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903940,GSM4903941 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903942,GSM4903943 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903942,GSM4903943 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903942,GSM4903943 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903942,GSM4903943 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903944,GSM4903945 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903944,GSM4903945 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903944,GSM4903945 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903944,GSM4903945 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161248 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates. 37116939 59747 SRP292401 animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903944,GSM4903945 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903946,GSM4903947,GSM4903948 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903946,GSM4903947,GSM4903948 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903946,GSM4903947,GSM4903948 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903946,GSM4903947,GSM4903948 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Eco.lacz + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903949,GSM4903950,GSM4903951 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Eco.lacz + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903949,GSM4903950,GSM4903951 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Eco.lacz + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903949,GSM4903950,GSM4903951 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Eco.lacz + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903949,GSM4903950,GSM4903951 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903952,GSM4903953,GSM4903954 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903952,GSM4903953,GSM4903954 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903952,GSM4903953,GSM4903954 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903952,GSM4903953,GSM4903954 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903955,GSM4903956,GSM4903957 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903955,GSM4903956,GSM4903957 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903955,GSM4903956,GSM4903957 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903955,GSM4903956,GSM4903957 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161249 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological r 37116939 59747 SRP292402 animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903955,GSM4903956,GSM4903957 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903958,GSM4903959,GSM4903960 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903958,GSM4903959,GSM4903960 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903958,GSM4903959,GSM4903960 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903958,GSM4903959,GSM4903960 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903964,GSM4903965 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903964,GSM4903965 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903964,GSM4903965 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903964,GSM4903965 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903968,GSM4903969,GSM4903970 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903968,GSM4903969,GSM4903970 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903968,GSM4903969,GSM4903970 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - hbg1 cMO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903968,GSM4903969,GSM4903970 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903961,GSM4903962,GSM4903963 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903961,GSM4903962,GSM4903963 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903961,GSM4903962,GSM4903963 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10 RNA-Seq NF10 animal cap Angerilli A et al. (2023) GSM4903961,GSM4903962,GSM4903963 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903971,GSM4903972,GSM4903973 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903971,GSM4903972,GSM4903973 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903971,GSM4903972,GSM4903973 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24 RNA-Seq NF24 animal cap Angerilli A et al. (2023) GSM4903971,GSM4903972,GSM4903973 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903966,GSM4903967 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903966,GSM4903967 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903966,GSM4903967 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161250 Tamas Schauer Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4] Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates. 37116939 59747 SRP292404 animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16 RNA-Seq NF16 animal cap Angerilli A et al. (2023) GSM4903966,GSM4903967 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE - NF9 RNA-Seq NF9 embryo Jansen C et al. (2022) GSM4910712,GSM4910713 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE - NF9 RNA-Seq NF9 embryo Jansen C et al. (2022) GSM4910712,GSM4910713 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE - NF10 RNA-Seq NF10 embryo Jansen C et al. (2022) GSM4910714,GSM4910715 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE - NF10 RNA-Seq NF10 embryo Jansen C et al. (2022) GSM4910714,GSM4910715 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE - NF10.5 RNA-Seq NF10.5 embryo Jansen C et al. (2022) GSM4910716,GSM4910717 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE - NF10.5 RNA-Seq NF10.5 embryo Jansen C et al. (2022) GSM4910716,GSM4910717 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF9 RNA-Seq NF9 embryo Jansen C et al. (2022) GSM4910706,GSM4910707 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF9 RNA-Seq NF9 embryo Jansen C et al. (2022) GSM4910706,GSM4910707 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF9 RNA-Seq NF9 embryo Jansen C et al. (2022) GSM4910706,GSM4910707 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF10 RNA-Seq NF10 embryo Jansen C et al. (2022) GSM4910708,GSM4910709 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF10 RNA-Seq NF10 embryo Jansen C et al. (2022) GSM4910708,GSM4910709 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF10 RNA-Seq NF10 embryo Jansen C et al. (2022) GSM4910708,GSM4910709 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF10.5 RNA-Seq NF10.5 embryo Jansen C et al. (2022) GSM4910710,GSM4910711 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF10.5 RNA-Seq NF10.5 embryo Jansen C et al. (2022) GSM4910710,GSM4910711 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161600 Kitt Paraiso Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq] We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 Kitt Paraiso, Kitt Paraiso ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were 35172134 58965 SRP292871 WE + tcf7l1 MO - NF10.5 RNA-Seq NF10.5 embryo Jansen C et al. (2022) GSM4910710,GSM4910711 Manipulations/Morpholino tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 Xtr.thra{tm},thrb{tmShiyb} intestine - NF54 RNA-Seq NF54 intestine Shibata Y et al. (2021) GSM4913147,GSM4913148,GSM4913149 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 Xtr.thra{tm},thrb{tmShiyb} intestine - NF54 RNA-Seq NF54 intestine Shibata Y et al. (2021) GSM4913147,GSM4913148,GSM4913149 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 intestine - NF54 RNA-Seq NF54 intestine Shibata Y et al. (2021) GSM4913144,GSM4913145,GSM4913146 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 intestine - NF54 RNA-Seq NF54 intestine Shibata Y et al. (2021) GSM4913144,GSM4913145,GSM4913146 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 Xtr.thra{tm},thrb{tmShiyb} intestine - NF61 RNA-Seq NF61 intestine Shibata Y et al. (2021) GSM4913153,GSM4913154,GSM4913155 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 Xtr.thra{tm},thrb{tmShiyb} intestine - NF61 RNA-Seq NF61 intestine Shibata Y et al. (2021) GSM4913153,GSM4913154,GSM4913155 RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 intestine - NF61 RNA-Seq NF61 intestine Shibata Y et al. (2021) GSM4913150,GSM4913151,GSM4913152 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161714 Henry Zhang Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tr 33802526 57996 SRP293086 intestine - NF61 RNA-Seq NF61 intestine Shibata Y et al. (2021) GSM4913150,GSM4913151,GSM4913152 RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 intestine - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913234,GSM4913235,GSM4913236 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 intestine - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913234,GSM4913235,GSM4913236 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 intestine + L-T3 - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913237,GSM4913238,GSM4913239 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 intestine + L-T3 - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913237,GSM4913238,GSM4913239 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 intestine + L-T3 - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913237,GSM4913238,GSM4913239 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 itr.thra{tmShiyb} intestine - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913228,GSM4913229,GSM4913230 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 itr.thra{tmShiyb} intestine - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913228,GSM4913229,GSM4913230 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 Xtr.thra{tmShiyb} intestine + L-T3 - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913231,GSM4913232,GSM4913233 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 Xtr.thra{tmShiyb} intestine + L-T3 - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913231,GSM4913232,GSM4913233 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 161718 Henry Zhang Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35132135 58978 SRP293094 Xtr.thra{tmShiyb} intestine + L-T3 - NF54 RNA-Seq NF54 intestine Tanizaki Y et al. (2022) GSM4913231,GSM4913232,GSM4913233 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE - NF31 RNA-Seq NF31 embryo GSM4988996,GSM4988997 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE - NF31 RNA-Seq NF31 embryo GSM4988996,GSM4988997 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE - NF33/34 RNA-Seq NF33/34 embryo GSM4988998,GSM4988999 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE - NF33/34 RNA-Seq NF33/34 embryo GSM4988998,GSM4988999 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE + Carbon black - NF31 RNA-Seq NF31 embryo GSM4989000,GSM4989001 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE + Carbon black - NF31 RNA-Seq NF31 embryo GSM4989000,GSM4989001 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE + Carbon black - NF31 RNA-Seq NF31 embryo GSM4989000,GSM4989001 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE + Carbon black - NF33/34 RNA-Seq NF33/34 embryo GSM4989002,GSM4989003 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE + Carbon black - NF33/34 RNA-Seq NF33/34 embryo GSM4989002,GSM4989003 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 163875 Taejoon Kwon Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells Exposure to particulate matter (PM) in ambient air is known to increase the risk of cardiovascular disorders and mortality. The cytotoxicity of PM is Taejoon Kwon, Hee-Sun Yang, Hyo Sim, Hanna Cho, Woo Bang, Ha Kim, Taeg Kwon, Tae Park For each species (X. laevis and B. orientalis), we treated 100 ug/mL of the particulate matters (PM) to whole embryo. For each condition, we used dupl 0 60224 SRP299616 WE + Carbon black - NF33/34 RNA-Seq NF33/34 embryo GSM4989002,GSM4989003 Manipulations/Chemical laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE163875/XENLA_10.1/RNA-Seq/Readme.txt 164204 Juan Larraín Cellular response to spinal cord injury in regenerative and non-regenerative stages in Xenopus laevis. Background: The efficient regenerative abilities at larvae stages followed by a non-regenerative response after metamorphosis in froglets makes Xenopu Juan Larraín, Gabriela Edwards-Faret, Karina González-Pinto, Arantxa Cebrián-Silla, Johany Peñailillo, José García-Verdugo Characterization of cell population GFAP::EGFP from the transgenic line Xla.Tg(Dre.gfap:EGFP)Larra in regenerative stages of Xenopus laevis 33526076 57773 SRP300206 spinal cord GFP+ - NF50 RNA-Seq NF50 spinal cord Edwards-Faret G et al. (2021) GSM5003919 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Readme.txt 164204 Juan Larraín Cellular response to spinal cord injury in regenerative and non-regenerative stages in Xenopus laevis. Background: The efficient regenerative abilities at larvae stages followed by a non-regenerative response after metamorphosis in froglets makes Xenopu Juan Larraín, Gabriela Edwards-Faret, Karina González-Pinto, Arantxa Cebrián-Silla, Johany Peñailillo, José García-Verdugo Characterization of cell population GFAP::EGFP from the transgenic line Xla.Tg(Dre.gfap:EGFP)Larra in regenerative stages of Xenopus laevis 33526076 57773 SRP300206 spinal cord GFP- - NF50 RNA-Seq NF50 spinal cord Edwards-Faret G et al. (2021) GSM5003918 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Done|Loader Done ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Readme.txt 165343 Juan Larraín High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis. 34686684 58545 SRP302901 spinal cord - NF50 RNA-Seq NF50 spinal cord Peñailillo J et al. (2021) GSM5031806,GSM5031807 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE - NF18 RNA-Seq NF18 embryo GSM5049608,GSM5049609,GSM5049610,GSM5049611,GSM5049612 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE - NF18 RNA-Seq NF18 embryo GSM5049608,GSM5049609,GSM5049610,GSM5049611,GSM5049612 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE - NF29/30 RNA-Seq NF29/30 embryo GSM5049645,GSM5049646,GSM5049647,GSM5049648,GSM5049649 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE - NF29/30 RNA-Seq NF29/30 embryo GSM5049645,GSM5049646,GSM5049647,GSM5049648,GSM5049649 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm self transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049650,GSM5049651 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm self transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049650,GSM5049651 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm self transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049650,GSM5049651 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm self transplant - NF18 RNA-Seq NF18 embryo GSM5049613,GSM5049614 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm self transplant - NF18 RNA-Seq NF18 embryo GSM5049613,GSM5049614 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm self transplant - NF18 RNA-Seq NF18 embryo GSM5049613,GSM5049614 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant + rotation - NF18 RNA-Seq NF18 embryo GSM5049620,GSM5049621,GSM5049622,GSM5049623,GSM5049624 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant + rotation - NF18 RNA-Seq NF18 embryo GSM5049620,GSM5049621,GSM5049622,GSM5049623,GSM5049624 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant + rotation - NF18 RNA-Seq NF18 embryo GSM5049620,GSM5049621,GSM5049622,GSM5049623,GSM5049624 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant + rotation - NF18 RNA-Seq NF18 embryo GSM5049635,GSM5049636,GSM5049637,GSM5049638,GSM5049639 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant + rotation - NF18 RNA-Seq NF18 embryo GSM5049635,GSM5049636,GSM5049637,GSM5049638,GSM5049639 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant + rotation - NF18 RNA-Seq NF18 embryo GSM5049635,GSM5049636,GSM5049637,GSM5049638,GSM5049639 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm sham transplant - NF18 RNA-Seq NF18 embryo GSM5049625,GSM5049626,GSM5049627,GSM5049628,GSM5049629 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm sham transplant - NF18 RNA-Seq NF18 embryo GSM5049625,GSM5049626,GSM5049627,GSM5049628,GSM5049629 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm sham transplant - NF18 RNA-Seq NF18 embryo GSM5049625,GSM5049626,GSM5049627,GSM5049628,GSM5049629 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant - NF18 RNA-Seq NF18 embryo GSM5049615,GSM5049616,GSM5049617,GSM5049618,GSM5049619 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant - NF18 RNA-Seq NF18 embryo GSM5049615,GSM5049616,GSM5049617,GSM5049618,GSM5049619 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant - NF18 RNA-Seq NF18 embryo GSM5049615,GSM5049616,GSM5049617,GSM5049618,GSM5049619 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm sham transplant - NF18 RNA-Seq NF18 embryo GSM5049640,GSM5049641,GSM5049642,GSM5049643,GSM5049644 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm sham transplant - NF18 RNA-Seq NF18 embryo GSM5049640,GSM5049641,GSM5049642,GSM5049643,GSM5049644 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm sham transplant - NF18 RNA-Seq NF18 embryo GSM5049640,GSM5049641,GSM5049642,GSM5049643,GSM5049644 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant - NF18 RNA-Seq NF18 embryo GSM5049630,GSM5049631,GSM5049632,GSM5049633,GSM5049634 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant - NF18 RNA-Seq NF18 embryo GSM5049630,GSM5049631,GSM5049632,GSM5049633,GSM5049634 RNA-Seq/Whole Embryo/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant - NF18 RNA-Seq NF18 embryo GSM5049630,GSM5049631,GSM5049632,GSM5049633,GSM5049634 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant + rotation - NF29/30 RNA-Seq NF29/30 embryo GSM5049657,GSM5049658,GSM5049659,GSM5049660,GSM5049661 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant + rotation - NF29/30 RNA-Seq NF29/30 embryo GSM5049657,GSM5049658,GSM5049659,GSM5049660,GSM5049661 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant + rotation - NF29/30 RNA-Seq NF29/30 embryo GSM5049657,GSM5049658,GSM5049659,GSM5049660,GSM5049661 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm sham transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049662,GSM5049663,GSM5049664,GSM5049665,GSM5049666 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm sham transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049662,GSM5049663,GSM5049664,GSM5049665,GSM5049666 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm sham transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049662,GSM5049663,GSM5049664,GSM5049665,GSM5049666 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049652,GSM5049653,GSM5049654,GSM5049655,GSM5049656 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049652,GSM5049653,GSM5049654,GSM5049655,GSM5049656 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF11 neuroectoderm transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049652,GSM5049653,GSM5049654,GSM5049655,GSM5049656 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant + rotation - NF29/30 RNA-Seq NF29/30 embryo GSM5049672,GSM5049673,GSM5049674,GSM5049675,GSM5049676 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant + rotation - NF29/30 RNA-Seq NF29/30 embryo GSM5049672,GSM5049673,GSM5049674,GSM5049675,GSM5049676 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant + rotation - NF29/30 RNA-Seq NF29/30 embryo GSM5049672,GSM5049673,GSM5049674,GSM5049675,GSM5049676 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm sham transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049677,GSM5049678,GSM5049679,GSM5049680,GSM5049681 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm sham transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049677,GSM5049678,GSM5049679,GSM5049680,GSM5049681 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm sham transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049677,GSM5049678,GSM5049679,GSM5049680,GSM5049681 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049667,GSM5049668,GSM5049669,GSM5049670,GSM5049671 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049667,GSM5049668,GSM5049669,GSM5049670,GSM5049671 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 165763 Margaret Saha Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control 0 60222 SRP303801 WE + NF12 neuroectoderm transplant - NF29/30 RNA-Seq NF29/30 embryo GSM5049667,GSM5049668,GSM5049669,GSM5049670,GSM5049671 RNA-Seq/Whole Embryo/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + eGFP - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074341 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + eGFP - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074341 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + eGFP - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074341 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + eGFP - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074338 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + eGFP - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074338 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + eGFP - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074338 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1 - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074339 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1 - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074339 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1 - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074339 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1l - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074340 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1l - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074340 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1l - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074340 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + water injection - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074337 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + water injection - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074337 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1l - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074342 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1l - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074342 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 166544 David Bartel The molecular basis of coupling between poly(A)-tail length and translational efficiency In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin David Bartel, Kehui Xiang RNA-seq, Ribo-seq TAIL-seq, PAL-seq 34213414 58243 SRP305686 oocyte + pabpc1l - oocyte VI RNA-Seq oocyte VI oocyte Xiang K et al. (2021) GSM5074342 RNA-Seq/Embryonic Tissues/unfertilized egg laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - hbg1 cMO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097940 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - hbg1 cMO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097940 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - hbg1 cMO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097940 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - hbg1 cMO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097940 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - hbg1 cMO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097942 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - hbg1 cMO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097942 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - hbg1 cMO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097942 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - hbg1 cMO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097942 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - fto MO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097941 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - fto MO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097941 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - fto MO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097941 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 animal cap - fto MO + animal cap explant - NF20 RNA-Seq NF20 animal cap Kim H et al. (2021) GSM5097941 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RNA-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - fto MO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097943 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - fto MO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097943 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - fto MO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097943 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 167139 Young-suk Lee Identification of the FTO-FOXJ1 axis as a conserved regulatory module of embryonic and homeostatic motile ciliogenesis Adenosine N6-methylation (m6A) is one of the most pervasive mRNA modifications, and yet the physiological significance of m6A removal (demethylation) Young-suk Lee, Hyunjoon Kim, V Kim m6A-seq in Xenopus animal cap tissues 33761320 57939 SRP307184 m6A animal cap - fto MO + animal cap explant - NF20 RIP-Seq NF20 animal cap Kim H et al. (2021) GSM5097943 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE167139/XENLA_10.1/RIP-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137445,GSM5137446 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137445,GSM5137446 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137445,GSM5137446 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + pnhd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137451,GSM5137452 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + pnhd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137451,GSM5137452 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + pnhd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137451,GSM5137452 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + pnhd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137451,GSM5137452 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137447,GSM5137448 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137447,GSM5137448 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137447,GSM5137448 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - chrd + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137447,GSM5137448 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - Xla.pnhd-FLAG + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137449,GSM5137450 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - Xla.pnhd-FLAG + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137449,GSM5137450 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - Xla.pnhd-FLAG + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137449,GSM5137450 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 168370 Keiji Itoh Induction of dorsal mesodermal genes by pinhead and chordin Xenopus embryonic ectodermal cells are responsive to various inducing factors. Mesoderm is specified and patterned by extracellular factors including Keiji Itoh, Olga Ossipova, Sergei Sokol Eight samples are collected for RNAseq from four groups with duplicates. One group is control ectodermal explants (Co), the second is Flag-Pnhd expres 0 58208 SRP309498 animal cap - Xla.pnhd-FLAG + animal cap explant - NF15 RNA-Seq NF15 animal cap Itoh K et al. (2021) GSM5137449,GSM5137450 Manipulations/mRNA Injection laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE168370/XENLA_10.1/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 female organism, head - adult RNA-Seq adult female organism GSM5230666 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 male organism, head - adult RNA-Seq adult head GSM5230667 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 female organism, ovary - adult RNA-Seq adult female organism GSM5230663 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 female organism, lung - adult RNA-Seq adult female organism GSM5230668 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 male organism, testis - adult RNA-Seq adult male organism GSM5230669 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 female organism, alimentary system - adult RNA-Seq adult alimentary system GSM5230665 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 female organism, heart - adult RNA-Seq adult female organism GSM5230670 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 male organism, heart - adult RNA-Seq adult heart GSM5230664 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 171687 Aaron Zorn Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues Aaron Zorn, David Hill, Praneet Chaturvedi Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library 0 58020 female organism, intestine - adult RNA-Seq adult female organism GSM5230662 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 H3K27ac WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241407 ChIP-Seq/Epigenetic/H3K27ac tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 H3K4me1 WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241408 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 pan-TLE WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241415 ChIP-Seq/Transcription Factor/Tle tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 ep300 WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241416 ChIP-Seq/Transcription Factor/ep300 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 Otx2 WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241414 ChIP-Seq/Transcription Factor/Otx2 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 Lhx1 WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241413 ChIP-Seq/Transcription Factor/Lhx1 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 Gsc WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241406 ChIP-Seq/Transcription Factor/Gsc tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 input WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241409 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 input WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241410 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 input WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241411 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 172076 Aaron Zorn Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira ChIP-seq analyses using Xenopus tropicalis embryos. 0 49342 input WE - NF10.5 ChIP-Seq NF10.5 embryo Yasuoka Y et al. (2014) GSM5241412 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt 179158 Caroline Beck RNA-Seq analysis of the stage 51 hind limb bud of Xenopus laevis Reporting data obtained from dividing the stage 51 Xenopus laevis hind limb bud into thirds along the proximal distal axis (proximal, medial, distal) Caroline Beck, Daniel Hudson, Robert Day 30 hind limbs per replicate were used for each RNA extraction, there are two biological replicate pools for each segment of the hind limb, labelled as 35809036 59192 SRP326163 distal hindlimb bud - NF51 RNA-Seq NF51 hindlimb bud Hudson DT et al. (2022) GSM5410847,GSM5410848 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Readme.txt 179158 Caroline Beck RNA-Seq analysis of the stage 51 hind limb bud of Xenopus laevis Reporting data obtained from dividing the stage 51 Xenopus laevis hind limb bud into thirds along the proximal distal axis (proximal, medial, distal) Caroline Beck, Daniel Hudson, Robert Day 30 hind limbs per replicate were used for each RNA extraction, there are two biological replicate pools for each segment of the hind limb, labelled as 35809036 59192 SRP326163 distal hindlimb bud - NF51 RNA-Seq NF51 hindlimb bud Hudson DT et al. (2022) GSM5410847,GSM5410848 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Readme.txt 179158 Caroline Beck RNA-Seq analysis of the stage 51 hind limb bud of Xenopus laevis Reporting data obtained from dividing the stage 51 Xenopus laevis hind limb bud into thirds along the proximal distal axis (proximal, medial, distal) Caroline Beck, Daniel Hudson, Robert Day 30 hind limbs per replicate were used for each RNA extraction, there are two biological replicate pools for each segment of the hind limb, labelled as 35809036 59192 SRP326163 medial hindlimb bud - NF51 RNA-Seq NF51 hindlimb bud Hudson DT et al. (2022) GSM5410845,GSM5410846 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Readme.txt 179158 Caroline Beck RNA-Seq analysis of the stage 51 hind limb bud of Xenopus laevis Reporting data obtained from dividing the stage 51 Xenopus laevis hind limb bud into thirds along the proximal distal axis (proximal, medial, distal) Caroline Beck, Daniel Hudson, Robert Day 30 hind limbs per replicate were used for each RNA extraction, there are two biological replicate pools for each segment of the hind limb, labelled as 35809036 59192 SRP326163 medial hindlimb bud - NF51 RNA-Seq NF51 hindlimb bud Hudson DT et al. (2022) GSM5410845,GSM5410846 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Readme.txt 179158 Caroline Beck RNA-Seq analysis of the stage 51 hind limb bud of Xenopus laevis Reporting data obtained from dividing the stage 51 Xenopus laevis hind limb bud into thirds along the proximal distal axis (proximal, medial, distal) Caroline Beck, Daniel Hudson, Robert Day 30 hind limbs per replicate were used for each RNA extraction, there are two biological replicate pools for each segment of the hind limb, labelled as 35809036 59192 SRP326163 proximal hindlimb bud - NF51 RNA-Seq NF51 hindlimb bud Hudson DT et al. (2022) GSM5410843,GSM5410844 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Readme.txt 179158 Caroline Beck RNA-Seq analysis of the stage 51 hind limb bud of Xenopus laevis Reporting data obtained from dividing the stage 51 Xenopus laevis hind limb bud into thirds along the proximal distal axis (proximal, medial, distal) Caroline Beck, Daniel Hudson, Robert Day 30 hind limbs per replicate were used for each RNA extraction, there are two biological replicate pools for each segment of the hind limb, labelled as 35809036 59192 SRP326163 proximal hindlimb bud - NF51 RNA-Seq NF51 hindlimb bud Hudson DT et al. (2022) GSM5410843,GSM5410844 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179158/XENLA_10.1/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F1 liver (F0 Benzo[a]pyrene + Triclosan) - adult female RNA-Seq adult female organism GSM5412628,GSM5412629,GSM5412630,GSM5412631,GSM5412632 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F1 liver (F0 Benzo[a]pyrene + Triclosan) - adult female RNA-Seq adult female organism GSM5412628,GSM5412629,GSM5412630,GSM5412631,GSM5412632 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F1 liver (F0 Benzo[a]pyrene + Triclosan) - adult female RNA-Seq adult female organism GSM5412628,GSM5412629,GSM5412630,GSM5412631,GSM5412632 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F1 liver - adult female RNA-Seq adult female organism GSM5412638,GSM5412639,GSM5412640,GSM5412641,GSM5412642 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F1 liver - adult female RNA-Seq adult female organism GSM5412638,GSM5412639,GSM5412640,GSM5412641,GSM5412642 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F2 liver - adult female RNA-Seq adult female organism GSM5412643,GSM5412644,GSM5412645,GSM5412646,GSM5412647 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F2 liver - adult female RNA-Seq adult female organism GSM5412643,GSM5412644,GSM5412645,GSM5412646,GSM5412647 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F2 liver F0(Benzo[a]pyrene + Triclosan) - adult female RNA-Seq adult female organism GSM5412633,GSM5412634,GSM5412635,GSM5412636,GSM5412637 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F2 liver F0(Benzo[a]pyrene + Triclosan) - adult female RNA-Seq adult female organism GSM5412633,GSM5412634,GSM5412635,GSM5412636,GSM5412637 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 179257 Stéphane REYNAUD Using RNAseq for identifying hepatic genes involved in multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene (BaP) and triclosan (TCS) mixture exposure (F0 generation) in Xenopus tropicalis. We investigated the multi- and transgenerational impact of BaP and TCS mixture on Xenopus females following F0 generation exposure from the tadpole to Stéphane REYNAUD mRNAseq from liver of mature F1 and F2 females exposed to BaP and TCS mixture. Processed data file (Cuffdiff) have been performed by using RNAseq sequ 0 60225 SRP326481 F2 liver F0(Benzo[a]pyrene + Triclosan) - adult female RNA-Seq adult female organism GSM5412633,GSM5412634,GSM5412635,GSM5412636,GSM5412637 RNA-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE179257/XENTR_10.0/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + 4-Oxo-atRA - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456946,GSM5456947,GSM5456948 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + 4-Oxo-atRA - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456946,GSM5456947,GSM5456948 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + 4-Oxo-atRA - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456946,GSM5456947,GSM5456948 Manipulations/Chemical laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + DMSO - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456949,GSM5456950,GSM5456951 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + DMSO - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456949,GSM5456950,GSM5456951 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + DMSO - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456949,GSM5456950,GSM5456951 Manipulations/Chemical laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + Retinoic acid - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456952,GSM5456953,GSM5456954 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + Retinoic acid - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456952,GSM5456953,GSM5456954 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180269 Ziyan Lin Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes Ziyan Lin, Aditi Dubey, Jean-Pierre Saint-Jeannet, Paul Zappile Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos 34536327 58454 SRP328713 anterior region + Retinoic acid - NF15 RNA-Seq NF15 Dubey A et al. (2022) GSM5456952,GSM5456953,GSM5456954 Manipulations/Chemical laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180269/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE - NF10 RNA-Seq NF10 embryo GSM5467454,GSM5467455,GSM5467458 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE - NF10 RNA-Seq NF10 embryo GSM5467454,GSM5467455,GSM5467458 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE + taf15 MO - NF10 RNA-Seq NF10 embryo GSM5467456,GSM5467457,GSM5467459 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE + taf15 MO - NF10 RNA-Seq NF10 embryo GSM5467456,GSM5467457,GSM5467459 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE + taf15 MO - NF10 RNA-Seq NF10 embryo GSM5467456,GSM5467457,GSM5467459 RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE - NF15 RNA-Seq NF15 embryo GSM5467460,GSM5467464,GSM5467465,GSM5467466 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE - NF15 RNA-Seq NF15 embryo GSM5467460,GSM5467464,GSM5467465,GSM5467466 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE + taf15 MO - NF15 RNA-Seq NF15 embryo GSM5467461,GSM5467462,GSM5467463 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE + taf15 MO - NF15 RNA-Seq NF15 embryo GSM5467461,GSM5467462,GSM5467463 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 180671 Richard Harland Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos. Richard Harland, Caitlin DeJong, Darwin Dichmann, Cameron Exner, Yuxiao Xu, Richard Harland To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using re 0 60230 SRP329511 WE + taf15 MO - NF15 RNA-Seq NF15 embryo GSM5467461,GSM5467462,GSM5467463 RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE180671/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 forebrain - NF46 RNA-Seq NF46 forebrain Ta AC et al. (2022) GSM5552999,GSM5553000,GSM5553001 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 forebrain - NF46 RNA-Seq NF46 forebrain Ta AC et al. (2022) GSM5552999,GSM5553000,GSM5553001 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 forebrain - NF49 RNA-Seq NF49 forebrain Ta AC et al. (2022) GSM5553011,GSM5553012 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 forebrain - NF49 RNA-Seq NF49 forebrain Ta AC et al. (2022) GSM5553011,GSM5553012 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 hindbrain - NF46 RNA-Seq NF46 hindbrain Ta AC et al. (2022) GSM5553002,GSM5553003,GSM5553004 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 hindbrain - NF46 RNA-Seq NF46 hindbrain Ta AC et al. (2022) GSM5553002,GSM5553003,GSM5553004 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 hindbrain - NF49 RNA-Seq NF49 hindbrain Ta AC et al. (2022) GSM5553013,GSM5553014 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 hindbrain - NF49 RNA-Seq NF49 hindbrain Ta AC et al. (2022) GSM5553013,GSM5553014 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF44 RNA-Seq NF44 midbrain Ta AC et al. (2022) GSM5552996,GSM5552997,GSM5552998 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF44 RNA-Seq NF44 midbrain Ta AC et al. (2022) GSM5552996,GSM5552997,GSM5552998 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF46 RNA-Seq NF46 midbrain Ta AC et al. (2022) GSM5553005,GSM5553006,GSM5553007 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF46 RNA-Seq NF46 midbrain Ta AC et al. (2022) GSM5553005,GSM5553006,GSM5553007 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF49 RNA-Seq NF49 midbrain Ta AC et al. (2022) GSM5553015,GSM5553016 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF49 RNA-Seq NF49 midbrain Ta AC et al. (2022) GSM5553015,GSM5553016 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF55 RNA-Seq NF55 midbrain Ta AC et al. (2022) GSM5553019,GSM5553020,GSM5553021 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF55 RNA-Seq NF55 midbrain Ta AC et al. (2022) GSM5553019,GSM5553020,GSM5553021 RNA-Seq/Embryonic Tissues/Tadpole NF55 to NF57 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF61 RNA-Seq NF61 midbrain Ta AC et al. (2022) GSM5553022,GSM5553023,GSM5553024 RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF61 RNA-Seq NF61 midbrain Ta AC et al. (2022) GSM5553022,GSM5553023,GSM5553024 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF66 RNA-Seq NF66 midbrain Ta AC et al. (2022) GSM5553025 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 midbrain - NF66 RNA-Seq NF66 midbrain Ta AC et al. (2022) GSM5553025 RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 spinal cord - NF46 RNA-Seq NF46 spinal cord Ta AC et al. (2022) GSM5553008,GSM5553009,GSM5553010 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 spinal cord - NF46 RNA-Seq NF46 spinal cord Ta AC et al. (2022) GSM5553008,GSM5553009,GSM5553010 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 spinal cord - NF49 RNA-Seq NF49 spinal cord Ta AC et al. (2022) GSM5553017,GSM5553018 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 183193 Caroline McKeown Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stag 34751375 58609 SRP335212 spinal cord - NF49 RNA-Seq NF49 spinal cord Ta AC et al. (2022) GSM5553017,GSM5553018 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795954,GSM5795955,GSM5795956 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795954,GSM5795955,GSM5795956 ChIP-Seq/Transcription Factor/Thra-Thrb tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb + L-T3 - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795957,GSM5795958,GSM5795959 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb + L-T3 - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795957,GSM5795958,GSM5795959 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb + L-T3 - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795957,GSM5795958,GSM5795959 ChIP-Seq/Transcription Factor/Thra-Thrb tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795948,GSM5795949,GSM5795950 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795948,GSM5795949,GSM5795950 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795948,GSM5795949,GSM5795950 ChIP-Seq/Transcription Factor/Thra-Thrb tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb + L-T3 - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795951,GSM5795952,GSM5795953 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb + L-T3 - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795951,GSM5795952,GSM5795953 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb + L-T3 - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795951,GSM5795952,GSM5795953 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193363 Henry Zhang ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Our study represents the first detailed analysis of thyroid hormone binding to the genome in the hindlimb of wild-type and TRα (-/-) tadpoles, with b Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 thyroid hormone receptor hindlimb + L-T3 - NF54 ChIP-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795951,GSM5795952,GSM5795953 ChIP-Seq/Transcription Factor/Thra-Thrb tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193363/XENTR_10.0/ChIP-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795960,GSM5795961,GSM5795962 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795960,GSM5795961,GSM5795962 RNA-Seq/Whole Embryo/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb + L-T3 - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795963,GSM5795964,GSM5795965 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb + L-T3 - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795963,GSM5795964,GSM5795965 RNA-Seq/Whole Embryo/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb + L-T3 - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795963,GSM5795964,GSM5795965 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb + L-T3 - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795969,GSM5795970,GSM5795971 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb + L-T3 - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795969,GSM5795970,GSM5795971 RNA-Seq/Whole Embryo/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb + L-T3 - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795969,GSM5795970,GSM5795971 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb + L-T3 - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795969,GSM5795970,GSM5795971 Manipulations/Chemical tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795966,GSM5795967,GSM5795968 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795966,GSM5795967,GSM5795968 RNA-Seq/Whole Embryo/Tadpole NF45 to NF54 tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 193364 Henry Zhang RNA sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment Conclusions: Our study represents the first detailed analysis of hindlimb transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replicate Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles. 35163147 59036 hindlimb - NF54 RNA-Seq NF54 hindlimb Tanizaki Y et al. (2022) GSM5795966,GSM5795967,GSM5795968 Mutant Lines tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE193364/XENTR_10.0/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF48 RNA-Seq NF48 intestine GSM5829477,GSM5829481 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF48 RNA-Seq NF48 intestine GSM5829477,GSM5829481 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF48 RNA-Seq NF48 intestine GSM5829477,GSM5829481 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF49 RNA-Seq NF49 intestine GSM5829478,GSM5829482 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF49 RNA-Seq NF49 intestine GSM5829478,GSM5829482 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF49 RNA-Seq NF49 intestine GSM5829478,GSM5829482 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF48 RNA-Seq NF48 intestine GSM5829479,GSM5829484 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF48 RNA-Seq NF48 intestine GSM5829479,GSM5829484 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF48 RNA-Seq NF48 intestine GSM5829479,GSM5829484 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF49 RNA-Seq NF49 intestine GSM5829480,GSM5829485 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF49 RNA-Seq NF49 intestine GSM5829480,GSM5829485 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF49 RNA-Seq NF49 intestine GSM5829480,GSM5829485 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF50 RNA-Seq NF50 intestine GSM5829483 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF50 RNA-Seq NF50 intestine GSM5829483 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Fed - NF50 RNA-Seq NF50 intestine GSM5829483 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF50 RNA-Seq NF50 intestine GSM5829486 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF50 RNA-Seq NF50 intestine GSM5829486 Manipulations/Other laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 194146 Asako Shindo RNA-seq Analysis of intestinal tubes from the Unfed and Fed Xenopus laevis tadpoles In this study, we assessed nutrient-dependent organ morphogenesis in Xenopus laevis. We performed the RNA-seq analysis of the gastrointestinal (GI) tr Asako Shindo Intestinal mRNA profiles of the unfed and fed Xenopus laevis tadpoles (10 dpf to 16 dpf, raised at 19 ℃)contributor: Bioengineering Lab (https://gi 0 60236 intestine + Unfed - NF50 RNA-Seq NF50 intestine GSM5829486 RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE194146/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 bladder - adult RNA-Seq adult bladder GSM5850498 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 eye - adult RNA-Seq adult eye GSM5850499 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 intestine - adult RNA-Seq adult intestine GSM5850500,GSM5850501,GSM5850502 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 kidney - adult RNA-Seq adult kidney GSM5850503,GSM5850504,GSM5850505 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 lung - adult RNA-Seq adult lung GSM5850506,GSM5850507 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 pancreas - adult RNA-Seq adult pancreas GSM5850508 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 stomach - adult RNA-Seq adult stomach GSM5850497,GSM5850510 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 testis - adult RNA-Seq adult testis GSM5850511,GSM5850512 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195790 Haide Chen Construction the larval and adult Xenopus cell landscape at single cell resolution. Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mous Haide Chen, Guoji Guo, Xiaoping Han, Wanhua Shen, Yuan Liao, Lifeng Ma, Ewei Gao, Lei Yang Over 500,000 cells derived from adult Xenopus (one year old) dissociated tissues, including stomach (2 replicates), bladder (1 replicate), eye (1 repl 0 60235 spleen - adult RNA-Seq adult spleen GSM5850509 None laevis XL101 XENLA_10.1 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195790/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF9 (wnt11b{+/-}) RNA-Seq NF9 embryo Houston DW et al. (2022) GSM5851074,GSM5851075 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF9 (wnt11b{+/-}) RNA-Seq NF9 embryo Houston DW et al. (2022) GSM5851074,GSM5851075 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF9 (wnt11b{+/-}) RNA-Seq NF9 embryo Houston DW et al. (2022) GSM5851074,GSM5851075 Mutant Lines laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF10.5 (wnt11b{+/-}) RNA-Seq NF10.5 embryo Houston DW et al. (2022) GSM5851078,GSM5851079 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF10.5 (wnt11b{+/-}) RNA-Seq NF10.5 embryo Houston DW et al. (2022) GSM5851078,GSM5851079 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF10.5 (wnt11b{+/-}) RNA-Seq NF10.5 embryo Houston DW et al. (2022) GSM5851078,GSM5851079 Mutant Lines laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF10.5 (wnt11b{-/-}) RNA-Seq NF10.5 embryo Houston DW et al. (2022) GSM5851076,GSM5851077 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF10.5 (wnt11b{-/-}) RNA-Seq NF10.5 embryo Houston DW et al. (2022) GSM5851076,GSM5851077 RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF10.5 (wnt11b{-/-}) RNA-Seq NF10.5 embryo Houston DW et al. (2022) GSM5851076,GSM5851077 Mutant Lines laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF9 (wnt11b{-/-}) RNA-Seq NF9 embryo Houston DW et al. (2022) GSM5851072,GSM5851073 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF9 (wnt11b{-/-}) RNA-Seq NF9 embryo Houston DW et al. (2022) GSM5851072,GSM5851073 RNA-Seq/Whole Embryo/Blastula NF7 to NF9 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 195806 Douglas Houston Role of maternal Wnt11b in cortical rotation and axis formation Asymmetric signalling centres in the early embryo are essential for axis formation in vertebrates. These regions, namely the dorsal morula, yolk syncy Douglas Houston, Douglas Houston, Karen Elliott, Kelsey Coppenrath, Marcin Wliza, Marko Horb Bulk mRNA sequencing of gastrula gene expression in maternal-zygotic wnt11b mutants. 35946588 59250 WE - NF9 (wnt11b{-/-}) RNA-Seq NF9 embryo Houston DW et al. (2022) GSM5851072,GSM5851073 Mutant Lines laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE195806/XENLA_10.1/RNA-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 Polr2b spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931475,GSM5931476 ChIP-Seq/Transcription Factor/Pol II tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 ctcf spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931473,GSM5931474 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 ctcf spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931473,GSM5931474 ChIP-Seq/Transcription Factor/Ctcf tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H2az1 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931491,GSM5931492 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H2az1 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931491,GSM5931492 ChIP-Seq/Epigenetic/H2az1 tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K27AC spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931485,GSM5931486 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K27AC spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931485,GSM5931486 ChIP-Seq/Epigenetic/H3K27ac tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K27me3 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931487,GSM5931488 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K27me3 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931487,GSM5931488 ChIP-Seq/Epigenetic/H3K27me3 tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K4me1 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931481,GSM5931482 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K4me1 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931481,GSM5931482 ChIP-Seq/Epigenetic/H3K4me1 tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K4me3 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931483,GSM5931484 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K4me3 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931483,GSM5931484 ChIP-Seq/Epigenetic/H3K4me3 tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K9me2 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931489,GSM5931490 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3K9me2 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931489,GSM5931490 ChIP-Seq/Epigenetic/H3K9me2 tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931479,GSM5931480 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 H3 spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931479,GSM5931480 ChIP-Seq/Epigenetic/H3 tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197866 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60258 SMC spermatozoon - adult ChIP-Seq adult spermatozoon GSM5931477,GSM5931478 None tropicalis XT100 XENTR_10.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197866/XENTR_10.0/ChIP-Seq/Readme.txt 197867 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ATAC-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60257 spermatozoon - adult ATAC-Seq adult spermatozoon GSM5931493,GSM5931494,GSM5931495 None tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/Readme.txt 197867 Chuihui Hou Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ATAC-Seq] Vertebrate sperm genome differs from somatic cells and undergoes dramatic transformation after fertilization. However, the functional implications of Chuihui Hou, Chunhui Hou, Li Li, Longjian Niu, Jinsheng Xu Xenopus tropicalis sperm and Xenopus tropicalis x Xenopus laevis hybrid staged embryos were obtained. Hi-C, ChIP-seq, ATAC-seq and RNA-seq were perfor 0 60257 spermatozoon - adult ATAC-Seq adult spermatozoon GSM5931493,GSM5931494,GSM5931495 ATAC-Seq/Adult Tissues tropicalis XT100 XENTR_10.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE197867/XENTR_10.0/ATAC-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + hbg1 cMO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505872,GSM8505873,GSM8505874,GSM8505875 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + hbg1 cMO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505872,GSM8505873,GSM8505874,GSM8505875 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + hbg1 cMO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505872,GSM8505873,GSM8505874,GSM8505875 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + barhl1 MO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505876,GSM8505877,GSM8505878,GSM8505879 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + barhl1 MO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505876,GSM8505877,GSM8505878,GSM8505879 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + barhl1 MO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505876,GSM8505877,GSM8505878,GSM8505879 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + barhl1 MO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505880,GSM8505881,GSM8505882,GSM8505883 None laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + barhl1 MO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505880,GSM8505881,GSM8505882,GSM8505883 RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44 laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt 276791 Mohamed Doulazmi Role of barhl1 in amphbian cerebellum Cerebellar granule neuron progenitors (GNPs) originate from the upper rhombic lip (URL), a germinative niche in which developmental defects produce hu Mohamed Doulazmi, Johnny Bou-Rouphael, Alexis Eschstruth, Asna Abdou, Béatrice C Durand RNA- sequencing analysis was performed on dissected Rhombomere 1 from Xenopus Laevis tadpoles depleted or not for BarH-like 1 (Barhl1), a direct targe 0 60943 rhombomere R1 + barhl1 MO - NF41 RNA-Seq NF41 rhombomere R1 GSM8505880,GSM8505881,GSM8505882,GSM8505883 Manipulations/Morpholino laevis XL101 XENLA_10.1 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE276791/XENLA_10.1/RNA-Seq/Readme.txt